Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0012387

Physical Location & Seq

Genomic Coordinates Forward (+)

6972320 .. 6973483

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1084200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGAAAGACCACTCTCAGCCAAACCACAACTGTCAAACCACAGCCGTCTCCTCCTCTCCTTCCACCCCACCGGATATGGATGCCGGAATATGGAGCAAGCTGCCGGAGGAGCTCCTCGAGCTCGTCCTCTCTTTCCTCCCTCTCAAAAACTTACTGAATCTTCGATCGACTTGCAAGCGCTTCAAGTCTCTGTTATTCTCTCCCTCCTTCGTCTTCAAGCACTCCTCCTCCCCCTTCCCCTCCTTCCTCCTCCTCTCCCACCCTCAGTGCTTCCACCACTTCCCTCTCTACGACACCACCGCCGCCACCTGGCGCAAGTTACCTTTGTCTCTCTCTCCTCTGCTACCCTGTGCAACAGGCGCAGCACAAGCCTCCCTCCTCACTTCGTCCAATGGGTTGCTCTGTTTCCTTCTTCCCAATTCGTTTCTCGTCTTGAACCTTATGACCAAGTCCTCCAGAGTGATCGAATTCCCATATTACCCTTTCGGATTCGAGATTTTCTCTTTGATTGCCACCCCTGCTGGGTACAATATGTTCATGATCTCTTCCGGGTCATCGTCCAAAAGCACTTTGCTCTACGATTCGAAGGCCCAATCTTGGCAAAAATTCAACTTTTCAGAGACGGTTTTAAGCAACAATTGTCAGGAGACGGGAGTTTACTTCAAAGGGTGTTTGTATTTCGTGACGCCGGAGCCTTTTTCGATTGTCTGCTTCGAATTGGAGAGCTGGAAGTGGGGAAGACCGATTCCGGAGCTGCCGGCAGAGCTCATGTTTGCTCGGCTGGTCAGCAGCGGAGACGGCGGAGGAGGAGAGGGGAAGAAGCTGTGTCTGATTGGTGGGGTCGGCAGAAATGGGATTGCCAGGAGCTTAAAAGTGTGGGAATGGGAATGCAGCGGCGGAATGAAGTGGGTGGAGGTGGAGAGATTGCCGGAAAGGATGTGCAAGAAGTTGATGTCGGTTTGTTTCCACAATTACGAGCACCTGTACTGCTTTTGGCATCAGGGTTTGATCTGCGTCTGCTGCTACAATTGGCCGGAGGTTTTGTACTTCAAGGTTTCGAGGAGGACGTGGCATTGGGTCCCCAAATGCCCTTCTCTGCCGGATAAATCCAACTGCGGGTTCCGGTGGTTTTCCTTTATGCCGAACTTGTTTGCATCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

388

Amino Acids

43.81

Weight (kDa)

8.66

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	31 - 72	1.5e-10	F-box domain
F-box-like	PF12937	31 - 70	1.7e-09	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43190
fragaria_vesca	FvH4_2g33130
malus_domestica	MD08G1084200.v1.1 MD15G1070300.v1.1
prunus_persica	Prupe.1G423100_v2.0.a1
pyrus_communis	pycom08g06980
rosa_chinensis	RchiOBHm_Chr6g0309541
rosa_laevigata	RLG00000010555
rosa_multiflora	Rmu_co8522085.1_g000003 Rmu_sc0007283.1_g000011 Rmu_sc0024715.1_g000004 Rmu_sc0030536.1_g000005
rosa_roxburghii	Rroxscaffold_7G00159320
rosa_rugosa	Rorug06G0372700
rosa_samantha	Rh6AG486100 Rh6BG495500 Rh6CG500500 Rh6DG486400
rosa_wichuraiana	Rw6G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	748
AciI	CCGC	7 cut(s)	300, 303, 792, 801, 894, 897, 1116
AcoI	YGGCCR	1 cut(s)	1031
AcsI	RAATTY	2 cut(s)	467, 605
AcyI	GRCGYC	1 cut(s)	686
AfaI	GTAC	3 cut(s)	527, 986, 1046
AfeI	AGCGCT	1 cut(s)	179
AfiI	CCNNNNNNNGG	5 cut(s)	90, 309, 522, 597, 1116
AgsI	TTSAA	6 cut(s)	184, 217, 436, 610, 664, 1051
AjiI	CACGTC	1 cut(s)	1068
AjnI	CCWGG	2 cut(s)	308, 860
AjuI	GAANNNNNNNTTGG	2 cut(s)	1103, 1135
AluBI	AGCT	8 cut(s)	100, 112, 121, 726, 754, 766, 823, 867
AluI	AGCT	8 cut(s)	100, 112, 121, 726, 754, 766, 823, 867
Alw21I	GWGCWC	4 cut(s)	114, 123, 768, 981
Alw26I	GTCTC	6 cut(s)	52, 192, 333, 614, 641, 789
Ama87I	CYCGRG	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	748
Aor51HI	AGCGCT	1 cut(s)	179
AoxI	GGCC	2 cut(s)	588, 1031
ApeKI	GCWGC	6 cut(s)	100, 362, 754, 789, 891, 1020
ApoI	RAATTY	2 cut(s)	467, 605
AspLEI	GCGC	3 cut(s)	180, 315, 362
AspS9I	GGNCC	2 cut(s)	589, 1078
AsuC2I	CCSGG	1 cut(s)	550
AsuII	TTCGAA	2 cut(s)	584, 714
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	1078
BanII	GRGCYC	3 cut(s)	114, 123, 768
BbsI	GAAGAC	2 cut(s)	205, 745
Bbv12I	GWGCWC	4 cut(s)	114, 123, 768, 981
BbvI	GCAGC	6 cut(s)	87, 374, 741, 801, 903, 1007
BceAI	ACGGC	2 cut(s)	29, 814
BcgI	CGANNNNNNTGC	2 cut(s)	153, 187
BciT130I	CCWGG	2 cut(s)	310, 862
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	6 cut(s)	52, 192, 333, 614, 641, 789
BfoI	RGCGCY	1 cut(s)	181
BisI	GCNGC	8 cut(s)	101, 303, 363, 755, 790, 892, 895, 1021
BlsI	GCNGC	8 cut(s)	102, 304, 364, 756, 791, 893, 896, 1022
Bme1390I	CCNGG	3 cut(s)	310, 550, 862
Bme18I	GGWCC	1 cut(s)	1078
BmeT110I	CYCGRG	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	1068
BmgT120I	GGNCC	2 cut(s)	589, 1078
BmiI	GGNNCC	4 cut(s)	693, 1079, 1080, 1121
BmrFI	CCNGG	3 cut(s)	310, 550, 862
BmsI	GCATC	2 cut(s)	70, 1006
BpiI	GAAGAC	2 cut(s)	205, 745
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
BpmI	CTGGAG	1 cut(s)	439
Bpu14I	TTCGAA	2 cut(s)	584, 714
BpuMI	CCSGG	1 cut(s)	550
BsaHI	GRCGYC	1 cut(s)	686
BsaWI	WCCGGW	3 cut(s)	70, 748, 1122
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 1028, 1058
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 309, 522, 597, 1116
Bse118I	RCCGGY	1 cut(s)	757
BseAI	TCCGGA	1 cut(s)	748
BseBI	CCWGG	2 cut(s)	310, 862
BseGI	GGATG	2 cut(s)	85, 942
BseLI	CCNNNNNNNGG	5 cut(s)	90, 309, 522, 597, 1116
BseMII	CTCAG	2 cut(s)	29, 278
BseXI	GCAGC	6 cut(s)	87, 374, 741, 801, 903, 1007
BseYI	CCCAGC	1 cut(s)	521
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	590, 1033
BsiEI	CGRYCG	1 cut(s)	167
BsiHKAI	GWGCWC	4 cut(s)	114, 123, 768, 981
BsiHKCI	CYCGRG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	1064
BslI	CCNNNNNNNGG	5 cut(s)	90, 309, 522, 597, 1116
BsmAI	GTCTC	6 cut(s)	52, 192, 333, 614, 641, 789
BsmBI	CGTCTC	4 cut(s)	52, 614, 641, 789
BsmFI	GGGAC	1 cut(s)	1064
BsmI	GAATGC	1 cut(s)	893
BsnI	GGCC	2 cut(s)	590, 1033
BsoBI	CYCGRG	1 cut(s)	116
Bsp119I	TTCGAA	2 cut(s)	584, 714
Bsp1286I	GDGCHC	4 cut(s)	114, 123, 768, 981
Bsp13I	TCCGGA	1 cut(s)	748
Bsp143I	GATC	4 cut(s)	164, 462, 540, 1008
BspACI	CCGC	7 cut(s)	300, 303, 792, 801, 894, 897, 1116
BspANI	GGCC	2 cut(s)	590, 1033
BspCNI	CTCAG	2 cut(s)	28, 277
BspEI	TCCGGA	1 cut(s)	748
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	4 cut(s)	693, 1079, 1080, 1121
BspT104I	TTCGAA	2 cut(s)	584, 714
BsrFI	RCCGGY	1 cut(s)	757
BssAI	RCCGGY	1 cut(s)	757
BssMI	GATC	4 cut(s)	164, 462, 540, 1008
BssNI	GRCGYC	1 cut(s)	686
Bst2UI	CCWGG	2 cut(s)	310, 862
Bst4CI	ACNGT	2 cut(s)	32, 625
Bst6I	CTCTTC	1 cut(s)	550
BstACI	GRCGYC	1 cut(s)	686
BstBI	TTCGAA	2 cut(s)	584, 714
BstC8I	GCNNGC	3 cut(s)	98, 176, 759
BstDEI	CTNAG	2 cut(s)	15, 264
BstF5I	GGATG	2 cut(s)	85, 942
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	3 cut(s)	180, 315, 362
BstKTI	GATC	4 cut(s)	167, 465, 543, 1011
BstMAI	GTCTC	6 cut(s)	52, 192, 333, 614, 641, 789
BstMBI	GATC	4 cut(s)	164, 462, 540, 1008
BstMCI	CGRYCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	8 cut(s)	109, 118, 359, 368, 518, 763, 798, 1020
BstNI	CCWGG	2 cut(s)	310, 862
BstSCI	CCNGG	3 cut(s)	308, 548, 860
BstV1I	GCAGC	6 cut(s)	87, 374, 741, 801, 903, 1007
BstV2I	GAAGAC	2 cut(s)	205, 745
BsuRI	GGCC	2 cut(s)	590, 1033
BtrI	CACGTC	1 cut(s)	1068
BtsCI	GGATG	2 cut(s)	85, 942
BtsIMutI	CAGTG	1 cut(s)	272
Cac8I	GCNNGC	3 cut(s)	98, 176, 759
CciI	TCATGA	1 cut(s)	537
CfoI	GCGC	3 cut(s)	180, 315, 362
Cfr10I	RCCGGY	1 cut(s)	757
Cfr13I	GGNCC	2 cut(s)	589, 1078
CseI	GACGC	2 cut(s)	694, 1003
Csp6I	GTAC	3 cut(s)	526, 985, 1045
CviAII	CATG	2 cut(s)	538, 769
CviQI	GTAC	3 cut(s)	526, 985, 1045
DdeI	CTNAG	2 cut(s)	15, 264
DpnI	GATC	4 cut(s)	166, 464, 542, 1010
DpnII	GATC	4 cut(s)	164, 462, 540, 1008
EaeI	YGGCCR	1 cut(s)	1031
Eam1104I	CTCTTC	1 cut(s)	550
EarI	CTCTTC	1 cut(s)	550
EciI	GGCGGA	2 cut(s)	816, 912
Ecl136II	GAGCTC	3 cut(s)	112, 121, 766
Eco24I	GRGCYC	3 cut(s)	114, 123, 768
Eco47I	GGWCC	1 cut(s)	1078
Eco47III	AGCGCT	1 cut(s)	179
Eco53kI	GAGCTC	3 cut(s)	112, 121, 766
Eco88I	CYCGRG	1 cut(s)	116
EcoICRI	GAGCTC	3 cut(s)	112, 121, 766
EcoO109I	RGGNCCY	1 cut(s)	1078
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	2 cut(s)	308, 860
EcoT38I	GRGCYC	3 cut(s)	114, 123, 768
Esp3I	CGTCTC	4 cut(s)	52, 614, 641, 789
FaeI	CATG	2 cut(s)	541, 772
FaiI	YATR	8 cut(s)	77, 91, 443, 475, 533, 539, 770, 1139
FaqI	GGGAC	1 cut(s)	1064
FatI	CATG	2 cut(s)	537, 768
FauI	CCCGC	1 cut(s)	1109
Fnu4HI	GCNGC	8 cut(s)	101, 303, 363, 755, 790, 892, 895, 1021
FokI	GGATG	2 cut(s)	92, 949
FriOI	GRGCYC	3 cut(s)	114, 123, 768
Fsp4HI	GCNGC	8 cut(s)	101, 303, 363, 755, 790, 892, 895, 1021
GlaI	GCGC	3 cut(s)	179, 314, 361
GluI	GCNGC	8 cut(s)	101, 303, 363, 755, 790, 892, 895, 1021
GsaI	CCCAGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	439
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	590, 1033
HgaI	GACGC	2 cut(s)	694, 1003
HhaI	GCGC	3 cut(s)	180, 315, 362
Hin1I	GRCGYC	1 cut(s)	686
Hin1II	CATG	2 cut(s)	541, 772
Hin6I	GCGC	3 cut(s)	178, 313, 360
HinP1I	GCGC	3 cut(s)	178, 313, 360
HinfI	GANTC	4 cut(s)	157, 489, 581, 745
Hpy166II	GTNNAC	1 cut(s)	658
Hpy188I	TCNGA	3 cut(s)	488, 619, 831
Hpy188III	TCNNGA	7 cut(s)	433, 456, 493, 538, 644, 682, 749
Hpy8I	GTNNAC	1 cut(s)	658
HpyAV	CCTTC	7 cut(s)	69, 217, 244, 253, 419, 580, 1101
HpyCH4III	ACNGT	2 cut(s)	32, 625
HpyCH4IV	ACGT	1 cut(s)	1067
HpyCH4V	TGCA	5 cut(s)	174, 353, 891, 942, 1154
HpyF10VI	GCNNNNNNNGC	8 cut(s)	109, 118, 359, 368, 518, 763, 798, 1020
HpyF3I	CTNAG	2 cut(s)	15, 264
HpySE526I	ACGT	1 cut(s)	1067
Hsp92I	GRCGYC	1 cut(s)	686
Hsp92II	CATG	2 cut(s)	541, 772
HspAI	GCGC	3 cut(s)	178, 313, 360
KflI	GGGWCCC	1 cut(s)	1078
Kpn2I	TCCGGA	1 cut(s)	748
KroI	GCCGGC	1 cut(s)	757
KroNI	GCCGGC	1 cut(s)	759
Kzo9I	GATC	4 cut(s)	164, 462, 540, 1008
LmnI	GCTCC	6 cut(s)	93, 109, 117, 691, 751, 864
Lsp1109I	GCAGC	6 cut(s)	87, 374, 741, 801, 903, 1007
LweI	GCATC	2 cut(s)	70, 1006
MaeII	ACGT	1 cut(s)	1067
MaeIII	GTNAC	2 cut(s)	318, 682
MalI	GATC	4 cut(s)	166, 464, 542, 1010
MboI	GATC	4 cut(s)	164, 462, 540, 1008
MboII	GAAGA	6 cut(s)	152, 205, 404, 537, 750, 829
MfeI	CAATTG	2 cut(s)	637, 1027
MhlI	GDGCHC	4 cut(s)	114, 123, 768, 981
MluCI	AATT	7 cut(s)	418, 467, 605, 637, 716, 970, 1027
MmeI	TCCRAC	1 cut(s)	1134
MroI	TCCGGA	1 cut(s)	748
MroNI	GCCGGC	1 cut(s)	757
MseI	TTAA	2 cut(s)	629, 869
MspA1I	CMGCKG	2 cut(s)	792, 894
MspR9I	CCNGG	3 cut(s)	310, 550, 862
MunI	CAATTG	2 cut(s)	637, 1027
Mva1269I	GAATGC	1 cut(s)	893
MvaI	CCWGG	2 cut(s)	310, 862
MwoI	GCNNNNNNNGC	8 cut(s)	109, 118, 359, 368, 518, 763, 798, 1020
NaeI	GCCGGC	1 cut(s)	759
NciI	CCSGG	1 cut(s)	550
NdeII	GATC	4 cut(s)	164, 462, 540, 1008
NgoMIV	GCCGGC	1 cut(s)	757
NlaIII	CATG	2 cut(s)	541, 772
NlaIV	GGNNCC	4 cut(s)	693, 1079, 1080, 1121
NmeAIII	GCCGAG	1 cut(s)	757
NmuCI	GTSAC	1 cut(s)	682
NspV	TTCGAA	2 cut(s)	584, 714
PaeR7I	CTCGAG	1 cut(s)	116
PagI	TCATGA	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	1064
PctI	GAATGC	1 cut(s)	893
PdiI	GCCGGC	1 cut(s)	759
PfeI	GAWTC	4 cut(s)	157, 489, 581, 745
PflFI	GACNNNGTC	1 cut(s)	448
PkrI	GCNGC	8 cut(s)	102, 304, 364, 756, 791, 893, 896, 1022
Ple19I	CGATCG	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	1078
Psp124BI	GAGCTC	3 cut(s)	114, 123, 768
Psp5II	RGGWCCY	1 cut(s)	1078
Psp6I	CCWGG	2 cut(s)	308, 860
PspFI	CCCAGC	1 cut(s)	521
PspGI	CCWGG	2 cut(s)	308, 860
PspN4I	GGNNCC	4 cut(s)	693, 1079, 1080, 1121
PspPI	GGNCC	2 cut(s)	589, 1078
PspPPI	RGGWCCY	1 cut(s)	1078
PspXI	VCTCGAGB	1 cut(s)	116
PsrI	GAACNNNNNNTAC	2 cut(s)	518, 550
PsyI	GACNNNGTC	1 cut(s)	448
PvuI	CGATCG	1 cut(s)	167
RsaI	GTAC	3 cut(s)	527, 986, 1046
RsaNI	GTAC	3 cut(s)	526, 985, 1045
SacI	GAGCTC	3 cut(s)	114, 123, 768
SaqAI	TTAA	2 cut(s)	629, 869
SatI	GCNGC	8 cut(s)	101, 303, 363, 755, 790, 892, 895, 1021
Sau3AI	GATC	4 cut(s)	164, 462, 540, 1008
Sau96I	GGNCC	2 cut(s)	589, 1078
ScrFI	CCNGG	3 cut(s)	310, 550, 862
SduI	GDGCHC	4 cut(s)	114, 123, 768, 981
SfaNI	GCATC	2 cut(s)	70, 1006
Sfr274I	CTCGAG	1 cut(s)	116
SfuI	TTCGAA	2 cut(s)	584, 714
SinI	GGWCC	1 cut(s)	1078
SlaI	CTCGAG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	7 cut(s)	418, 467, 605, 637, 716, 970, 1027
SsiI	CCGC	7 cut(s)	300, 303, 792, 801, 894, 897, 1116
SstI	GAGCTC	3 cut(s)	114, 123, 768
StyD4I	CCNGG	3 cut(s)	308, 548, 860
TaaI	ACNGT	2 cut(s)	32, 625
TaiI	ACGT	1 cut(s)	1070
TaqI	TCGA	9 cut(s)	117, 163, 167, 465, 492, 584, 701, 714, 1058
TaqII	GACCGA	1 cut(s)	757
TasI	AATT	7 cut(s)	418, 467, 605, 637, 716, 970, 1027
TatI	WGTACW	2 cut(s)	984, 1044
TauI	GCSGC	2 cut(s)	305, 897
TfiI	GAWTC	4 cut(s)	157, 489, 581, 745
Tru1I	TTAA	2 cut(s)	629, 869
Tru9I	TTAA	2 cut(s)	629, 869
TscAI	CASTG	1 cut(s)	272
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	6 cut(s)	100, 362, 754, 789, 891, 1020
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	3 cut(s)	17, 526, 917
TspRI	CASTG	1 cut(s)	272
Tth111I	GACNNNGTC	1 cut(s)	448
VpaK11BI	GGWCC	1 cut(s)	1078
XapI	RAATTY	2 cut(s)	467, 605
XhoI	CTCGAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.