Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0012387

Physical Location & Seq

Genomic Coordinates Reverse (-)

66425101 .. 66426237

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG500500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGAATCAAATACCATCCCCCATGTCCAAGTCTCCAATGAGCTCGCCGGAGATGGACGCCGGAATATGGAGCAACCTACCGGAGGAACTCCTGGACCGTATTCTCTCCATGCTGCCTCTCAAAACCTTCATGGTTCTGAGATCAACTTGCAAGCATTTCAAGTCTCTGTTATTCTCTCCCACTTTCATTTCCAAGCACTCTTCCTCCAATTCCTCACTACCCTTCTCTTCTTTTCTCATGCTTTCTCACCCGCAGTGCTATCCCGACTTCCCTCTCTACGACTCGCAGCTCTGCGCGTGGCGCAGCTTCGCTCTTTCACTCTCGGAATTGCTACCCTGCGCTGCTGCAGGACCAGTCTCTCTGCTCTCCATCTCCAATGGGCTGCTCTGTTTCTCTCTGCCCAGCTCGTCTTCCTTTGTTGTCTGTAACATCTTGACCAAGTCATCGAGAGTGATCGAATACCCTACCTACCCTTTTCATTTTGAGCTGCTTACTCTGGTTTCCACTCCAGTTGGGTACAATATCTTCATGCTCTCTTCTGAGTCTTCCACCAAGACCAGAACCTTTGTATATGATTCGAAGGTCCAGTCTTGGCAAAATTTAATCTCATTGGATACAATTCTCAGTGACAATCATCATCAAGAAGGTGTTCATTTCAATGGGTCTCTCTACTTTTCGACCCCGGAGCCATTCTCAATTGTCAACTTTCATTTGGAGAGTGGTAAATGGGAGAGACACAATACTGAACTCCCCGGAGAGCTCGTTTTTGTTCGATTAGTGAGTGATGAAGGAAAAGGGAAGATGTATTTGATTGGTGGGATTGGTAGGAATGGGATTTCAAGGAGAATGAAAATCTGGGAACTGTGTGAAGGAAAGAATTGGGTGGAGATTGAGAGTGTGCCTGAAATGATGTGCAGAAAGATAATGTCAGTTTGTTACCATAATTACGAACATCTCTATTGCTTTTGGCATCAGGGTTTAATCTGTGTTTGCTGCTATGCGTGGCCTGAGATTTTGTATTACAAGGTTTCGAGGAGGACTTGGCATTGGCTCCCCAAAAGCCCTTCGGTGCCGGAAAGATGGGCTTGTGGCTTCAGGTGGTTTTCTTTTGTGCCGGAGTTGTATGCTTCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

378

Amino Acids

43.33

Weight (kDa)

7.17

Isoelectric Point (pI)

64.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	23 - 62	1.1e-08	F-box domain
F-box-like	PF12937	23 - 61	1.1e-06	F-box-like
FBA_1	PF07734	125 - 227	3.7e-07	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43190
fragaria_vesca	FvH4_2g33130
malus_domestica	MD08G1084200.v1.1 MD15G1070300.v1.1
prunus_persica	Prupe.1G423100_v2.0.a1
pyrus_communis	pycom08g06980
rosa_chinensis	RchiOBHm_Chr6g0309541
rosa_laevigata	RLG00000010555
rosa_multiflora	Rmu_co8522085.1_g000003 Rmu_sc0007283.1_g000011 Rmu_sc0024715.1_g000004 Rmu_sc0030536.1_g000005
rosa_roxburghii	Rroxscaffold_7G00159320
rosa_rugosa	Rorug06G0372700
rosa_samantha	Rh6AG486100 Rh6BG495500 Rh6CG500500 Rh6DG486400
rosa_wichuraiana	Rw6G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1069
AccII	CGCG	1 cut(s)	296
AciI	CCGC	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	598
AcuI	CTGAAG	2 cut(s)	1078, 1113
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	2 cut(s)	66, 82
AgsI	TTSAA	3 cut(s)	160, 658, 840
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	6 cut(s)	42, 289, 306, 405, 487, 760
AluI	AGCT	6 cut(s)	42, 289, 306, 405, 487, 760
Alw21I	GWGCWC	2 cut(s)	44, 762
Alw26I	GTCTC	5 cut(s)	36, 168, 361, 669, 727
AoxI	GGCC	1 cut(s)	1004
ApeKI	GCWGC	8 cut(s)	112, 286, 303, 341, 344, 382, 487, 993
ApoI	RAATTY	1 cut(s)	598
ArsI	GACNNNNNNTTYG	2 cut(s)	572, 604
Asp700I	GAANNNNTTC	1 cut(s)	648
AspLEI	GCGC	3 cut(s)	296, 303, 341
AspS9I	GGNCC	3 cut(s)	94, 350, 583
AsuC2I	CCSGG	2 cut(s)	683, 753
AsuHPI	GGTGA	1 cut(s)	239
AsuII	TTCGAA	1 cut(s)	578
AvaII	GGWCC	3 cut(s)	94, 350, 583
BanI	GGYRCC	1 cut(s)	1069
BanII	GRGCYC	2 cut(s)	44, 762
BarI	GAAGNNNNNNTAC	2 cut(s)	509, 541
BbsI	GAAGAC	2 cut(s)	402, 537
Bbv12I	GWGCWC	2 cut(s)	44, 762
BbvI	GCAGC	8 cut(s)	99, 298, 315, 328, 331, 369, 474, 980
BccI	CCATC	4 cut(s)	22, 46, 377, 1074
BciT130I	CCWGG	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	607
BcnI	CCSGG	2 cut(s)	683, 753
BcoDI	GTCTC	5 cut(s)	36, 168, 361, 669, 727
BfmI	CTRYAG	1 cut(s)	345
BfuI	GTATCC	1 cut(s)	607
BisI	GCNGC	8 cut(s)	113, 287, 304, 342, 345, 383, 488, 994
BlsI	GCNGC	8 cut(s)	114, 288, 305, 343, 346, 384, 489, 995
Bme1390I	CCNGG	3 cut(s)	92, 683, 753
Bme18I	GGWCC	3 cut(s)	94, 350, 583
BmgT120I	GGNCC	3 cut(s)	94, 350, 583
BmiI	GGNNCC	3 cut(s)	687, 1052, 1071
BmrFI	CCNGG	3 cut(s)	92, 683, 753
BmsI	GCATC	1 cut(s)	979
BpiI	GAAGAC	2 cut(s)	402, 537
BplI	GAGNNNNNCTC	2 cut(s)	677, 709
BpmI	CTGGAG	1 cut(s)	492
Bpu14I	TTCGAA	1 cut(s)	578
BpuMI	CCSGG	2 cut(s)	683, 753
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	669
BsaJI	CCNNGG	2 cut(s)	681, 751
BsaWI	WCCGGW	1 cut(s)	79
BsaXI	ACNNNNNCTCC	4 cut(s)	188, 218, 747, 777
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 82
Bse1I	ACTGG	3 cut(s)	353, 509, 586
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	2 cut(s)	681, 751
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	66, 82
BseMII	CTCAG	4 cut(s)	128, 531, 637, 999
BseNI	ACTGG	3 cut(s)	353, 509, 586
BseRI	GAGGAG	1 cut(s)	1048
BseXI	GCAGC	8 cut(s)	99, 298, 315, 328, 331, 369, 474, 980
BseYI	CCCAGC	1 cut(s)	401
BsgI	GTGCAG	1 cut(s)	934
Bsh1236I	CGCG	1 cut(s)	296
BshFI	GGCC	1 cut(s)	1006
BshNI	GGYRCC	1 cut(s)	1069
BsiHKAI	GWGCWC	2 cut(s)	44, 762
BsiSI	CCGG	7 cut(s)	47, 60, 80, 683, 753, 1073, 1115
BslI	CCNNNNNNNGG	2 cut(s)	66, 82
BsmAI	GTCTC	5 cut(s)	36, 168, 361, 669, 727
BsnI	GGCC	1 cut(s)	1006
Bso31I	GGTCTC	1 cut(s)	669
Bsp119I	TTCGAA	1 cut(s)	578
Bsp1286I	GDGCHC	2 cut(s)	44, 762
Bsp143I	GATC	2 cut(s)	140, 453
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	1006
BspCNI	CTCAG	4 cut(s)	129, 532, 636, 1000
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	3 cut(s)	687, 1052, 1071
BspMAI	CTGCAG	1 cut(s)	349
BspT104I	TTCGAA	1 cut(s)	578
BspT107I	GGYRCC	1 cut(s)	1069
BspTNI	GGTCTC	1 cut(s)	669
BsrI	ACTGG	3 cut(s)	353, 509, 586
BssECI	CCNNGG	2 cut(s)	681, 751
BssMI	GATC	2 cut(s)	140, 453
BssNI	GRCGYC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	98, 864
Bst6I	CTCTTC	3 cut(s)	205, 232, 541
BstACI	GRCGYC	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	578
BstC8I	GCNNGC	2 cut(s)	44, 152
BstDEI	CTNAG	4 cut(s)	137, 540, 623, 1008
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	14
BstFNI	CGCG	1 cut(s)	296
BstHHI	GCGC	3 cut(s)	296, 303, 341
BstKTI	GATC	2 cut(s)	143, 456
BstMAI	GTCTC	5 cut(s)	36, 168, 361, 669, 727
BstMBI	GATC	2 cut(s)	140, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	3 cut(s)	90, 681, 751
BstSFI	CTRYAG	1 cut(s)	345
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	8 cut(s)	99, 298, 315, 328, 331, 369, 474, 980
BstV2I	GAAGAC	2 cut(s)	402, 537
BsuI	GTATCC	1 cut(s)	607
BsuRI	GGCC	1 cut(s)	1006
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	3 cut(s)	260, 631, 1137
Cac8I	GCNNGC	2 cut(s)	44, 152
CfoI	GCGC	3 cut(s)	296, 303, 341
Cfr13I	GGNCC	3 cut(s)	94, 350, 583
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	517
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	5 cut(s)	22, 109, 130, 238, 529
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	4 cut(s)	137, 540, 623, 1008
DpnI	GATC	2 cut(s)	142, 455
DpnII	GATC	2 cut(s)	140, 453
Eam1104I	CTCTTC	3 cut(s)	205, 232, 541
EarI	CTCTTC	3 cut(s)	205, 232, 541
Ecl136II	GAGCTC	2 cut(s)	42, 760
Eco24I	GRGCYC	2 cut(s)	44, 762
Eco31I	GGTCTC	1 cut(s)	669
Eco47I	GGWCC	3 cut(s)	94, 350, 583
Eco53kI	GAGCTC	2 cut(s)	42, 760
Eco57I	CTGAAG	2 cut(s)	1078, 1113
EcoICRI	GAGCTC	2 cut(s)	42, 760
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	90
EcoT38I	GRGCYC	2 cut(s)	44, 762
FaeI	CATG	5 cut(s)	25, 112, 133, 241, 532
FalI	AAGNNNNNCTT	2 cut(s)	1069, 1101
FatI	CATG	5 cut(s)	21, 108, 129, 237, 528
FauI	CCCGC	1 cut(s)	258
Fnu4HI	GCNGC	8 cut(s)	113, 287, 304, 342, 345, 383, 488, 994
FriOI	GRGCYC	2 cut(s)	44, 762
Fsp4HI	GCNGC	8 cut(s)	113, 287, 304, 342, 345, 383, 488, 994
GlaI	GCGC	3 cut(s)	295, 302, 340
GluI	GCNGC	8 cut(s)	113, 287, 304, 342, 345, 383, 488, 994
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	1006
HapII	CCGG	7 cut(s)	47, 60, 80, 683, 753, 1073, 1115
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	3 cut(s)	296, 303, 341
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	5 cut(s)	25, 112, 133, 241, 532
Hin6I	GCGC	3 cut(s)	294, 301, 339
HinP1I	GCGC	3 cut(s)	294, 301, 339
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HinfI	GANTC	4 cut(s)	4, 281, 542, 575
HpaII	CCGG	7 cut(s)	47, 60, 80, 683, 753, 1073, 1115
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	3 cut(s)	138, 325, 541
Hpy188III	TCNNGA	4 cut(s)	263, 433, 447, 641
Hpy8I	GTNNAC	1 cut(s)	703
HpyAV	CCTTC	7 cut(s)	136, 232, 574, 638, 782, 863, 1074
HpyCH4III	ACNGT	2 cut(s)	98, 864
HpyCH4V	TGCA	3 cut(s)	150, 347, 915
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	4 cut(s)	137, 540, 623, 1008
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	5 cut(s)	25, 112, 133, 241, 532
HspAI	GCGC	3 cut(s)	294, 301, 339
Kzo9I	GATC	2 cut(s)	140, 453
LmnI	GCTCC	3 cut(s)	69, 685, 1056
Lsp1109I	GCAGC	8 cut(s)	99, 298, 315, 328, 331, 369, 474, 980
LweI	GCATC	1 cut(s)	979
MaeIII	GTNAC	3 cut(s)	425, 626, 935
MalI	GATC	2 cut(s)	142, 455
MboI	GATC	2 cut(s)	140, 453
MboII	GAAGA	7 cut(s)	192, 219, 402, 517, 528, 537, 811
MfeI	CAATTG	1 cut(s)	696
MhlI	GDGCHC	2 cut(s)	44, 762
MluCI	AATT	7 cut(s)	208, 326, 598, 618, 696, 877, 943
MlyI	GAGTC	2 cut(s)	275, 551
MnlI	CCTC	7 cut(s)	76, 126, 214, 223, 282, 1026, 1029
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	2 cut(s)	602, 980
MslI	CAYNNNNRTG	1 cut(s)	657
MspI	CCGG	7 cut(s)	47, 60, 80, 683, 753, 1073, 1115
MspR9I	CCNGG	3 cut(s)	92, 683, 753
MunI	CAATTG	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	300
NciI	CCSGG	2 cut(s)	683, 753
NdeII	GATC	2 cut(s)	140, 453
NlaIII	CATG	5 cut(s)	25, 112, 133, 241, 532
NlaIV	GGNNCC	3 cut(s)	687, 1052, 1071
NmuCI	GTSAC	1 cut(s)	626
NspV	TTCGAA	1 cut(s)	578
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	2 cut(s)	4, 575
PflFI	GACNNNGTC	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	8 cut(s)	114, 288, 305, 343, 346, 384, 489, 995
PleI	GAGTC	2 cut(s)	275, 550
PpsI	GAGTC	2 cut(s)	275, 550
Psp124BI	GAGCTC	2 cut(s)	44, 762
Psp6I	CCWGG	1 cut(s)	90
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	3 cut(s)	687, 1052, 1071
PspPI	GGNCC	3 cut(s)	94, 350, 583
PstI	CTGCAG	1 cut(s)	349
PsyI	GACNNNGTC	1 cut(s)	439
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	657
SacI	GAGCTC	2 cut(s)	44, 762
SaqAI	TTAA	2 cut(s)	602, 980
SatI	GCNGC	8 cut(s)	113, 287, 304, 342, 345, 383, 488, 994
Sau3AI	GATC	2 cut(s)	140, 453
Sau96I	GGNCC	3 cut(s)	94, 350, 583
SchI	GAGTC	2 cut(s)	275, 551
ScrFI	CCNGG	3 cut(s)	92, 683, 753
SduI	GDGCHC	2 cut(s)	44, 762
SfaNI	GCATC	1 cut(s)	979
SfcI	CTRYAG	1 cut(s)	345
SfuI	TTCGAA	1 cut(s)	578
SinI	GGWCC	3 cut(s)	94, 350, 583
SmiMI	CAYNNNNRTG	1 cut(s)	657
Sse9I	AATT	7 cut(s)	208, 326, 598, 618, 696, 877, 943
SsiI	CCGC	1 cut(s)	251
SstI	GAGCTC	2 cut(s)	44, 762
StyD4I	CCNGG	3 cut(s)	90, 681, 751
TaaI	ACNGT	2 cut(s)	98, 864
TaqI	TCGA	6 cut(s)	446, 456, 578, 677, 772, 1031
TasI	AATT	7 cut(s)	208, 326, 598, 618, 696, 877, 943
TfiI	GAWTC	2 cut(s)	4, 575
Tru1I	TTAA	2 cut(s)	602, 980
Tru9I	TTAA	2 cut(s)	602, 980
TscAI	CASTG	3 cut(s)	260, 631, 1137
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	8 cut(s)	112, 286, 303, 341, 344, 382, 487, 993
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	9 cut(s)	17, 118, 175, 467, 517, 641, 698, 801, 863
TspRI	CASTG	3 cut(s)	260, 631, 1137
Tth111I	GACNNNGTC	1 cut(s)	439
VpaK11BI	GGWCC	3 cut(s)	94, 350, 583
XagI	CCTNNNNNAGG	1 cut(s)	80
XapI	RAATTY	1 cut(s)	598
XmnI	GAANNNNTTC	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.