Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007062

Physical Location & Seq

Genomic Coordinates Reverse (-)

24982263 .. 24986371

Gene Structure 4109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g33240.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGATGCTGCTGCGAAGCACCACCTCACTTATTCTCCGGTCAAAATCGTCGACTTCCTCACCGGCCTTCACCACCTCCTCATCCACTTTCGCAGCTGCTCTGTTCAAAACCTCCGCAGCCAAATCTCACTCACCTTTAGTTGCACTGCGAAATTACCGATCTACCCTCCCTTCTCCTCCTCGCTGCGCCGTGAGTGAGAGTGACTCTGTGCAAGTTGAAGAGATGGCCGCCGGAGATGTCCAAGATCCTCGCCTAGAAAGAATTGCCTCTTCAATCAGAGTCATCCCTGATTTTCCCAAGCCAGGGATTATGTTCCAGGATATTACTACCTTACTTCTGGATACTCAAGCTTTCAAGGATACCATTGATTTGCTTGTTGAGAGGTACAAAGACAAGGAAATCTCTGTTGTTGCAGGTATCGAAGCTAGAGGTTTTATTTTTGGTCCTCCCATTGCGCTGGCCATTGGGGCTAAATTTGTACCTATGAGAAAGCCGAATAAGTTGCCTGGGAAGGTTATTTCTGAAGAGTACTCTTTGGAGTATGGAACAGACACGATGGAGATGCATGTGGGAGCTGTAGAAGCAGGAGAACGTGCCTTGATCATTGATGATCTTATTGCAACTGGAGGAACTTTGGGTGCTGCAATCAGGCTACTTGAACGAGTTGGGGTGACGGTGGTAGAATGTGCCTGTGTAATTGCACTGCCAGAACTAAAGGGTCGGGAACGATTGGGAGACAATCCGTTATTTGTTCTCATCAATGCACCCGGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009308 GO:0009507 GO:0009536 GO:0009690 GO:0009987 GO:0010817 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032261 GO:0034641 GO:0034654 GO:0034754 GO:0042445 GO:0043094 GO:0043101 GO:0043173 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044209 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046390 GO:0046483 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

259

Amino Acids

27.69

Weight (kDa)

5.83

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	113 - 242	2.1e-17	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27450 AT1G27450 AT1G27450 AT1G27450
fragaria_vesca	FvH4_2g33240 FvH4_2g33240 FvH4_2g33240
malus_domestica	MD08G1086300.v1.1 MD08G1086400.v1.1 MD15G1071300.v1.1
prunus_persica	Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1
pyrus_communis	pycom08g07090 pycom15g06710
rosa_chinensis	RchiOBHm_Chr6g0309401
rosa_laevigata	RLG00000010569
rosa_multiflora	Rmu_sc0012466.1_g000005 Rmu_sc0017306.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159430
rosa_rugosa	Rorug06G0371900
rosa_samantha	Rh6BG494200 Rh6CG499200 Rh6DG485400
rosa_wichuraiana	Rw6G042240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	50
AciI	CCGC	2 cut(s)	114, 228
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	2 cut(s)	225, 459
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	3 cut(s)	386, 480, 530
AfiI	CCNNNNNNNGG	2 cut(s)	302, 303
AgsI	TTSAA	5 cut(s)	106, 218, 273, 355, 659
AjnI	CCWGG	3 cut(s)	301, 315, 505
AluBI	AGCT	4 cut(s)	95, 350, 425, 575
AluI	AGCT	4 cut(s)	95, 350, 425, 575
Alw26I	GTCTC	1 cut(s)	729
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	3 cut(s)	63, 225, 459
ApeKI	GCWGC	7 cut(s)	7, 10, 92, 95, 116, 183, 641
ApoI	RAATTY	1 cut(s)	473
AspLEI	GCGC	2 cut(s)	188, 457
AspS9I	GGNCC	1 cut(s)	443
AsuC2I	CCSGG	1 cut(s)	768
AsuHPI	GGTGA	4 cut(s)	51, 61, 123, 682
AvaII	GGWCC	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	461
BbvI	GCAGC	5 cut(s)	82, 104, 128, 170, 628
BccI	CCATC	2 cut(s)	217, 550
BceAI	ACGGC	1 cut(s)	173
BcgI	CGANNNNNNTGC	4 cut(s)	484, 518, 544, 578
BciT130I	CCWGG	3 cut(s)	303, 317, 507
BciVI	GTATCC	2 cut(s)	334, 352
BclI	TGATCA	1 cut(s)	600
BcnI	CCSGG	1 cut(s)	768
BcoDI	GTCTC	1 cut(s)	729
BfaI	CTAG	2 cut(s)	254, 426
BfmI	CTRYAG	1 cut(s)	576
BfuAI	ACCTGC	1 cut(s)	404
BfuI	GTATCC	2 cut(s)	334, 352
BglI	GCCNNNNNGGC	1 cut(s)	467
BisI	GCNGC	8 cut(s)	8, 11, 93, 96, 117, 184, 228, 642
BlsI	GCNGC	8 cut(s)	9, 12, 94, 97, 118, 185, 229, 643
BmcAI	AGTACT	1 cut(s)	530
Bme1390I	CCNGG	4 cut(s)	303, 317, 507, 768
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmrFI	CCNGG	4 cut(s)	303, 317, 507, 768
BmsI	GCATC	1 cut(s)	552
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BpmI	CTGGAG	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	768
BsaJI	CCNNGG	2 cut(s)	302, 506
BsaWI	WCCGGW	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 303
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	628
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	3 cut(s)	303, 317, 507
BseDI	CCNNGG	2 cut(s)	302, 506
BseGI	GGATG	2 cut(s)	80, 282
BseLI	CCNNNNNNNGG	2 cut(s)	302, 303
BseMI	GCAATG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	628
BseRI	GAGGAG	3 cut(s)	67, 165, 168
BseXI	GCAGC	5 cut(s)	82, 104, 128, 170, 628
BshFI	GGCC	3 cut(s)	65, 227, 461
BsiSI	CCGG	4 cut(s)	37, 62, 231, 768
BslI	CCNNNNNNNGG	2 cut(s)	302, 303
BsmAI	GTCTC	1 cut(s)	729
BsnI	GGCC	3 cut(s)	65, 227, 461
Bsp143I	GATC	4 cut(s)	158, 244, 600, 610
BspACI	CCGC	2 cut(s)	114, 228
BspANI	GGCC	3 cut(s)	65, 227, 461
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	450
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	2 cut(s)	302, 506
BssMI	GATC	4 cut(s)	158, 244, 600, 610
Bst2UI	CCWGG	3 cut(s)	303, 317, 507
Bst4CI	ACNGT	1 cut(s)	676
Bst6I	CTCTTC	3 cut(s)	213, 274, 519
BstC8I	GCNNGC	1 cut(s)	459
BstF5I	GGATG	2 cut(s)	80, 282
BstHHI	GCGC	2 cut(s)	188, 457
BstKTI	GATC	4 cut(s)	161, 247, 603, 613
BstMAI	GTCTC	1 cut(s)	729
BstMBI	GATC	4 cut(s)	158, 244, 600, 610
BstMWI	GCNNNNNNNGC	3 cut(s)	467, 581, 770
BstNI	CCWGG	3 cut(s)	303, 317, 507
BstNSI	RCATGY	1 cut(s)	569
BstSCI	CCNGG	4 cut(s)	301, 315, 505, 766
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	5 cut(s)	82, 104, 128, 170, 628
BstX2I	RGATCY	1 cut(s)	244
BstXI	CCANNNNNNTGG	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	244
BsuI	GTATCC	2 cut(s)	334, 352
BsuRI	GGCC	3 cut(s)	65, 227, 461
BtsCI	GGATG	2 cut(s)	80, 282
BtsI	GCAGTG	2 cut(s)	143, 701
BtsIMutI	CAGTG	2 cut(s)	143, 701
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	1 cut(s)	459
CfoI	GCGC	2 cut(s)	188, 457
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	3 cut(s)	385, 479, 529
CviAII	CATG	2 cut(s)	566, 774
CviQI	GTAC	3 cut(s)	385, 479, 529
DpnI	GATC	4 cut(s)	160, 246, 602, 612
DpnII	GATC	4 cut(s)	158, 244, 600, 610
EaeI	YGGCCR	2 cut(s)	225, 459
Eam1104I	CTCTTC	3 cut(s)	213, 274, 519
EarI	CTCTTC	3 cut(s)	213, 274, 519
Eco47I	GGWCC	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	543
EcoRII	CCWGG	3 cut(s)	301, 315, 505
EcoT22I	ATGCAT	1 cut(s)	567
FaeI	CATG	2 cut(s)	569, 777
FaiI	YATR	5 cut(s)	311, 485, 543, 567, 775
FatI	CATG	2 cut(s)	565, 773
FbaI	TGATCA	1 cut(s)	600
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	8 cut(s)	8, 11, 93, 96, 117, 184, 228, 642
FokI	GGATG	2 cut(s)	67, 269
Fsp4HI	GCNGC	8 cut(s)	8, 11, 93, 96, 117, 184, 228, 642
FspBI	CTAG	2 cut(s)	254, 426
GlaI	GCGC	2 cut(s)	187, 456
GluI	GCNGC	8 cut(s)	8, 11, 93, 96, 117, 184, 228, 642
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	3 cut(s)	65, 227, 461
HapII	CCGG	4 cut(s)	37, 62, 231, 768
HhaI	GCGC	2 cut(s)	188, 457
Hin1II	CATG	2 cut(s)	569, 777
Hin6I	GCGC	2 cut(s)	186, 455
HinP1I	GCGC	2 cut(s)	186, 455
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	2 cut(s)	203, 279
HpaII	CCGG	4 cut(s)	37, 62, 231, 768
HphI	GGTGA	4 cut(s)	51, 61, 123, 682
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	278, 523
Hpy188III	TCNNGA	2 cut(s)	338, 722
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	76, 180, 505
HpyCH4III	ACNGT	1 cut(s)	676
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	8 cut(s)	143, 211, 413, 565, 620, 644, 701, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	467, 581, 770
HpySE526I	ACGT	1 cut(s)	592
Hsp92II	CATG	2 cut(s)	569, 777
HspAI	GCGC	2 cut(s)	186, 455
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	4 cut(s)	158, 244, 600, 610
LmnI	GCTCC	2 cut(s)	572, 770
Lsp1109I	GCAGC	5 cut(s)	82, 104, 128, 170, 628
LweI	GCATC	1 cut(s)	552
MaeI	CTAG	2 cut(s)	254, 426
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	2 cut(s)	200, 670
MalI	GATC	4 cut(s)	160, 246, 602, 612
MboI	GATC	4 cut(s)	158, 244, 600, 610
MboII	GAAGA	3 cut(s)	230, 261, 536
MflI	RGATCY	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	4 cut(s)	151, 261, 473, 696
MluNI	TGGCCA	1 cut(s)	461
MlyI	GAGTC	2 cut(s)	197, 288
Mox20I	TGGCCA	1 cut(s)	461
Mph1103I	ATGCAT	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	461
Msp20I	TGGCCA	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	4 cut(s)	37, 62, 231, 768
MspR9I	CCNGG	4 cut(s)	303, 317, 507, 768
MvaI	CCWGG	3 cut(s)	303, 317, 507
MwoI	GCNNNNNNNGC	3 cut(s)	467, 581, 770
NciI	CCSGG	1 cut(s)	768
NdeII	GATC	4 cut(s)	158, 244, 600, 610
NlaIII	CATG	2 cut(s)	569, 777
NmuCI	GTSAC	2 cut(s)	200, 670
NsiI	ATGCAT	1 cut(s)	567
NspI	RCATGY	1 cut(s)	569
PfoI	TCCNGGA	1 cut(s)	315
PkrI	GCNGC	8 cut(s)	9, 12, 94, 97, 118, 185, 229, 643
PleI	GAGTC	2 cut(s)	197, 287
PpsI	GAGTC	2 cut(s)	197, 287
Psp6I	CCWGG	3 cut(s)	301, 315, 505
PspGI	CCWGG	3 cut(s)	301, 315, 505
PspPI	GGNCC	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	3 cut(s)	386, 480, 530
RsaNI	GTAC	3 cut(s)	385, 479, 529
SalI	GTCGAC	1 cut(s)	49
SatI	GCNGC	8 cut(s)	8, 11, 93, 96, 117, 184, 228, 642
Sau3AI	GATC	4 cut(s)	158, 244, 600, 610
Sau96I	GGNCC	1 cut(s)	443
ScaI	AGTACT	1 cut(s)	530
SchI	GAGTC	2 cut(s)	197, 288
ScrFI	CCNGG	4 cut(s)	303, 317, 507, 768
SfaNI	GCATC	1 cut(s)	552
SfcI	CTRYAG	1 cut(s)	576
SinI	GGWCC	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	4 cut(s)	151, 261, 473, 696
SsiI	CCGC	2 cut(s)	114, 228
SspMI	CTAG	2 cut(s)	254, 426
StyD4I	CCNGG	4 cut(s)	301, 315, 505, 766
TaaI	ACNGT	1 cut(s)	676
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	2 cut(s)	50, 420
TasI	AATT	4 cut(s)	151, 261, 473, 696
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	1 cut(s)	230
TscAI	CASTG	2 cut(s)	150, 708
TseFI	GTSAC	2 cut(s)	200, 670
TseI	GCWGC	7 cut(s)	7, 10, 92, 95, 116, 183, 641
Tsp45I	GTSAC	2 cut(s)	200, 670
TspGWI	ACGGA	1 cut(s)	732
TspRI	CASTG	2 cut(s)	150, 708
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	473
XceI	RCATGY	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	50
XspI	CTAG	2 cut(s)	254, 426
ZrmI	AGTACT	1 cut(s)	530
Zsp2I	ATGCAT	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.