Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007062

Physical Location & Seq

Genomic Coordinates Reverse (-)

7187157 .. 7190145

Gene Structure 2989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1086400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGATGCTTCAAAGCACCTCATTTCTTTTCTCGTCAAATTCCTTCACTTTCTCACCCGCCGTCGCCTTCCGCCCTCCCGCAGCTAGAACTTCGTCCTCCGCCGCCCCGCCGCCCTCCATTCGTTTCCCAAATTACCGATCCGCCCGCCCTCCCGCTCGCTGCTCTGTGAGTAAGAGTGAAGCGCTGAAAGTTGAAGCAATGGCAGCAGAAGACGGTCAGGATCCTCGCCTTGCTAGAATTTCATCTGCTATCAGAGTCATACCAGACTTCCCCAAGCCAGGGATTTTGTTCCAAGATATTACTACATTGCTCCTGGATACCAAGGCTTTCAAGGACACCATTGATTTGTTTGTTGAGAGGTACAAGGACAAAGAAATCTCTGTTGTTGCAGGTGTTGAAGCTAGAGGGTTTATATTTGGCCCTCCTATTGCCTTGGCCATTGGGGCAAAATTTGTGCCCTTGAGGAAACCAAAGAAGTTGCCTGGGAAGGTTATTTCTGAAGAGTACTCTTTGGAGTATGGAACAGATACTATGGAGATGCACGTGGGAGCTGTAGAAGCAGGTGAACGTGCCTTGATCATAGATGACCTCATTGCAACTGGGGGAACCTTGGGTGCTGCCATCAGGCTACTTGAGCGTGTAGGAGTGCATGTCGTTGAGTGTGCCTGTGTAATTGAATTACCAGAACTAAAGGGTCGGGAACGATTGGCGGGGAAACCATTGTTTGTTCTAGTTAGCGGAGACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009308 GO:0009507 GO:0009536 GO:0009690 GO:0009987 GO:0010817 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032261 GO:0034641 GO:0034654 GO:0034754 GO:0042445 GO:0043094 GO:0043101 GO:0043173 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044209 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046390 GO:0046483 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

250

Amino Acids

26.85

Weight (kDa)

8.4

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	109 - 232	2.6e-17	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27450 AT1G27450 AT1G27450 AT1G27450
fragaria_vesca	FvH4_2g33240 FvH4_2g33240 FvH4_2g33240
malus_domestica	MD08G1086300.v1.1 MD08G1086400.v1.1 MD15G1071300.v1.1
prunus_persica	Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1
pyrus_communis	pycom08g07090 pycom15g06710
rosa_chinensis	RchiOBHm_Chr6g0309401
rosa_laevigata	RLG00000010569
rosa_multiflora	Rmu_sc0012466.1_g000005 Rmu_sc0017306.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159430
rosa_rugosa	Rorug06G0371900
rosa_samantha	Rh6BG494200 Rh6CG499200 Rh6DG485400
rosa_wichuraiana	Rw6G042240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	380, 551
Acc36I	ACCTGC	2 cut(s)	380, 551
AccBSI	CCGCTC	1 cut(s)	155
AclWI	GGATC	3 cut(s)	132, 215, 228
AcoI	YGGCCR	1 cut(s)	435
AcsI	RAATTY	3 cut(s)	37, 237, 449
AcuI	CTGAAG	1 cut(s)	519
AcvI	CACGTG	1 cut(s)	544
AfaI	GTAC	2 cut(s)	362, 506
AfeI	AGCGCT	1 cut(s)	183
AfiI	CCNNNNNNNGG	2 cut(s)	278, 279
AgsI	TTSAA	5 cut(s)	11, 194, 331, 398, 677
AjnI	CCWGG	3 cut(s)	277, 312, 481
AluBI	AGCT	3 cut(s)	83, 401, 551
AluI	AGCT	3 cut(s)	83, 401, 551
Alw26I	GTCTC	1 cut(s)	735
AlwI	GGATC	3 cut(s)	132, 215, 228
Aor51HI	AGCGCT	1 cut(s)	183
AoxI	GGCC	2 cut(s)	418, 435
ApeKI	GCWGC	4 cut(s)	80, 159, 203, 617
ApoI	RAATTY	3 cut(s)	37, 237, 449
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	2 cut(s)	45, 575
BaeGI	GKGCMC	1 cut(s)	459
BalI	TGGCCA	1 cut(s)	437
BamHI	GGATCC	1 cut(s)	220
BbrPI	CACGTG	1 cut(s)	544
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	4 cut(s)	92, 146, 215, 604
BccI	CCATC	1 cut(s)	629
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	3 cut(s)	279, 314, 483
BciVI	GTATCC	1 cut(s)	310
BclI	TGATCA	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	735
BfaI	CTAG	4 cut(s)	84, 234, 402, 731
BfmI	CTRYAG	1 cut(s)	552
BfoI	RGCGCY	1 cut(s)	185
BfuAI	ACCTGC	2 cut(s)	380, 551
BfuI	GTATCC	1 cut(s)	310
BglI	GCCNNNNNGGC	1 cut(s)	443
BisI	GCNGC	6 cut(s)	81, 102, 110, 160, 204, 618
BlsI	GCNGC	6 cut(s)	82, 103, 111, 161, 205, 619
BmcAI	AGTACT	1 cut(s)	506
Bme1390I	CCNGG	3 cut(s)	279, 314, 483
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	222, 607
BmrFI	CCNGG	3 cut(s)	279, 314, 483
BmrI	ACTGGG	1 cut(s)	609
BmsI	GCATC	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	609
BpiI	GAAGAC	1 cut(s)	216
BpuEI	CTTGAG	2 cut(s)	481, 653
BsaAI	YACGTR	1 cut(s)	544
BsaJI	CCNNGG	5 cut(s)	278, 321, 432, 482, 609
BsaXI	ACNNNNNCTCC	2 cut(s)	636, 666
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 279
Bse1I	ACTGG	1 cut(s)	604
Bse3DI	GCAATG	3 cut(s)	204, 305, 591
BseBI	CCWGG	3 cut(s)	279, 314, 483
BseDI	CCNNGG	5 cut(s)	278, 321, 432, 482, 609
BseLI	CCNNNNNNNGG	2 cut(s)	278, 279
BseMI	GCAATG	3 cut(s)	204, 305, 591
BseNI	ACTGG	1 cut(s)	604
BseSI	GKGCMC	1 cut(s)	459
BseXI	GCAGC	4 cut(s)	92, 146, 215, 604
BshFI	GGCC	2 cut(s)	420, 437
BslI	CCNNNNNNNGG	2 cut(s)	278, 279
BsmAI	GTCTC	1 cut(s)	735
BsmBI	CGTCTC	1 cut(s)	735
BsnI	GGCC	2 cut(s)	420, 437
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	3 cut(s)	137, 220, 576
BspANI	GGCC	2 cut(s)	420, 437
BspLI	GGNNCC	2 cut(s)	222, 607
BspMI	ACCTGC	2 cut(s)	380, 551
BspPI	GGATC	3 cut(s)	132, 215, 228
BsrBI	CCGCTC	1 cut(s)	155
BsrDI	GCAATG	3 cut(s)	204, 305, 591
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	5 cut(s)	278, 321, 432, 482, 609
BssMI	GATC	3 cut(s)	137, 220, 576
BssT1I	CCWWGG	3 cut(s)	321, 432, 609
Bst2UI	CCWGG	3 cut(s)	279, 314, 483
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	495
BstBAI	YACGTR	1 cut(s)	544
BstC8I	GCNNGC	2 cut(s)	145, 157
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	3 cut(s)	140, 223, 579
BstMAI	GTCTC	1 cut(s)	735
BstMBI	GATC	3 cut(s)	137, 220, 576
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 443, 557, 634
BstNI	CCWGG	3 cut(s)	279, 314, 483
BstNSI	RCATGY	1 cut(s)	653
BstSCI	CCNGG	3 cut(s)	277, 312, 481
BstSFI	CTRYAG	1 cut(s)	552
BstSLI	GKGCMC	1 cut(s)	459
BstV1I	GCAGC	4 cut(s)	92, 146, 215, 604
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	2 cut(s)	420, 437
BveI	ACCTGC	2 cut(s)	380, 551
Cac8I	GCNNGC	2 cut(s)	145, 157
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	361, 505
CviAII	CATG	2 cut(s)	650, 747
CviJI	RGCY	8 cut(s)	83, 277, 326, 401, 420, 437, 551, 628
CviKI_1	RGCY	8 cut(s)	83, 277, 326, 401, 420, 437, 551, 628
CviQI	GTAC	2 cut(s)	361, 505
DpnI	GATC	3 cut(s)	139, 222, 578
DpnII	GATC	3 cut(s)	137, 220, 576
EaeI	YGGCCR	1 cut(s)	435
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
EciI	GGCGGA	3 cut(s)	59, 88, 130
Eco130I	CCWWGG	3 cut(s)	321, 432, 609
Eco47III	AGCGCT	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	519
Eco72I	CACGTG	1 cut(s)	544
EcoRII	CCWGG	3 cut(s)	277, 312, 481
EcoT14I	CCWWGG	3 cut(s)	321, 432, 609
ErhI	CCWWGG	3 cut(s)	321, 432, 609
Esp3I	CGTCTC	1 cut(s)	735
FaeI	CATG	2 cut(s)	653, 750
FaiI	YATR	7 cut(s)	260, 413, 519, 533, 581, 651, 748
FatI	CATG	2 cut(s)	649, 746
FauI	CCCGC	6 cut(s)	64, 85, 114, 152, 160, 703
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	6 cut(s)	81, 102, 110, 160, 204, 618
Fsp4HI	GCNGC	6 cut(s)	81, 102, 110, 160, 204, 618
FspBI	CTAG	4 cut(s)	84, 234, 402, 731
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	6 cut(s)	81, 102, 110, 160, 204, 618
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	420, 437
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	2 cut(s)	653, 750
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	1 cut(s)	255
HphI	GGTGA	2 cut(s)	45, 575
Hpy166II	GTNNAC	1 cut(s)	566
Hpy188I	TCNGA	2 cut(s)	254, 499
Hpy188III	TCNNGA	2 cut(s)	218, 698
Hpy8I	GTNNAC	1 cut(s)	566
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	3 cut(s)	52, 76, 481
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	2 cut(s)	543, 568
HpyCH4V	TGCA	4 cut(s)	389, 541, 596, 649
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 443, 557, 634
HpySE526I	ACGT	2 cut(s)	543, 568
Hsp92II	CATG	2 cut(s)	653, 750
HspAI	GCGC	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	3 cut(s)	137, 220, 576
LmnI	GCTCC	2 cut(s)	315, 548
Lsp1109I	GCAGC	4 cut(s)	92, 146, 215, 604
LweI	GCATC	1 cut(s)	528
MaeI	CTAG	4 cut(s)	84, 234, 402, 731
MaeII	ACGT	2 cut(s)	543, 568
MalI	GATC	3 cut(s)	139, 222, 578
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	3 cut(s)	137, 220, 576
MboII	GAAGA	2 cut(s)	221, 512
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	459
MlsI	TGGCCA	1 cut(s)	437
MluCI	AATT	6 cut(s)	37, 130, 237, 449, 672, 677
MluNI	TGGCCA	1 cut(s)	437
MlyI	GAGTC	1 cut(s)	264
Mox20I	TGGCCA	1 cut(s)	437
MscI	TGGCCA	1 cut(s)	437
Msp20I	TGGCCA	1 cut(s)	437
MspR9I	CCNGG	3 cut(s)	279, 314, 483
MvaI	CCWGG	3 cut(s)	279, 314, 483
MwoI	GCNNNNNNNGC	4 cut(s)	203, 443, 557, 634
NdeII	GATC	3 cut(s)	137, 220, 576
NlaIII	CATG	2 cut(s)	653, 750
NlaIV	GGNNCC	2 cut(s)	222, 607
NspI	RCATGY	1 cut(s)	653
PaqCI	CACCTGC	2 cut(s)	380, 551
PfoI	TCCNGGA	1 cut(s)	312
PkrI	GCNGC	6 cut(s)	82, 103, 111, 161, 205, 619
PleI	GAGTC	1 cut(s)	263
PmaCI	CACGTG	1 cut(s)	544
PmlI	CACGTG	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	263
Ppu21I	YACGTR	1 cut(s)	544
Psp6I	CCWGG	3 cut(s)	277, 312, 481
PspCI	CACGTG	1 cut(s)	544
PspGI	CCWGG	3 cut(s)	277, 312, 481
PspN4I	GGNNCC	2 cut(s)	222, 607
PspPI	GGNCC	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	2 cut(s)	362, 506
RsaNI	GTAC	2 cut(s)	361, 505
SatI	GCNGC	6 cut(s)	81, 102, 110, 160, 204, 618
Sau3AI	GATC	3 cut(s)	137, 220, 576
Sau96I	GGNCC	1 cut(s)	419
ScaI	AGTACT	1 cut(s)	506
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	3 cut(s)	279, 314, 483
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	1 cut(s)	528
SfcI	CTRYAG	1 cut(s)	552
SmlI	CTYRAG	2 cut(s)	460, 632
SmoI	CTYRAG	2 cut(s)	460, 632
Sse9I	AATT	6 cut(s)	37, 130, 237, 449, 672, 677
SspMI	CTAG	4 cut(s)	84, 234, 402, 731
StyD4I	CCNGG	3 cut(s)	277, 312, 481
StyI	CCWWGG	3 cut(s)	321, 432, 609
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	2 cut(s)	546, 571
TasI	AATT	6 cut(s)	37, 130, 237, 449, 672, 677
TatI	WGTACW	1 cut(s)	504
TauI	GCSGC	2 cut(s)	104, 112
TseI	GCWGC	4 cut(s)	80, 159, 203, 617
TspDTI	ATGAA	1 cut(s)	231
XapI	RAATTY	3 cut(s)	37, 237, 449
XceI	RCATGY	1 cut(s)	653
XspI	CTAG	4 cut(s)	84, 234, 402, 731
ZrmI	AGTACT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.