Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017306.1

Orthogroup ID

OG0007062

Physical Location & Seq

Genomic Coordinates Forward (+)

6148 .. 9586

Gene Structure 3439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017306.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgatgctgctgcgcaccaccgtctcagttcttctctggtcaaactcgttggcttcctcgccatccttcatcaccagcaccacctgtcccactctcgcagcaactccgtttaaaaccaaatctcattctcccttagttgcattcccaaattaccgatccaccctcgcttctcctcgctgcaccgtgagtgatagtgactctctgaaatttcaagagatggccgccgaagacgctcaagatcctcgcctagcgaaaattgcctctgcaatcagagtcatacccgactttcccaagccagggattatgttccaagatattactaccttacttctggatacccaggctttcaaggataccattgatttgtttgttgagaggtacaaagacaaagaaatctctgttgttgcaggtattgaagctagaggttttatttttggccctcctattgcattggccattggggctaaatttgtacctatgagaaagccgaataagttgcctgggaaggttatttctgaagagtactctttggagtatggaacagacacgatggaaatgcatgtgggagctgtagaagcaggagaacgtgcattgatcattgatgatctcattgcaactggaggaactttgggtgctgcaatcaggctacttgaacgtgttggggtgaaggtggttgagtgtgcctgtgtaattgcactgccagagctaaagggtcgggaacgattgggagacaatccgttatttgttcttgtcaatgcacctggagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009308 GO:0009507 GO:0009536 GO:0009690 GO:0009987 GO:0010817 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032261 GO:0034641 GO:0034654 GO:0034754 GO:0042445 GO:0043094 GO:0043101 GO:0043173 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044209 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046390 GO:0046483 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

256

Amino Acids

27.63

Weight (kDa)

5.81

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27450 AT1G27450 AT1G27450 AT1G27450
fragaria_vesca	FvH4_2g33240 FvH4_2g33240 FvH4_2g33240
malus_domestica	MD08G1086300.v1.1 MD08G1086400.v1.1 MD15G1071300.v1.1
prunus_persica	Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1
pyrus_communis	pycom08g07090 pycom15g06710
rosa_chinensis	RchiOBHm_Chr6g0309401
rosa_laevigata	RLG00000010569
rosa_multiflora	Rmu_sc0012466.1_g000005 Rmu_sc0017306.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159430
rosa_rugosa	Rorug06G0371900
rosa_samantha	Rh6BG494200 Rh6CG499200 Rh6DG485400
rosa_wichuraiana	Rw6G042240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	398
AciI	CCGC	1 cut(s)	222
AclWI	GGATC	2 cut(s)	150, 233
AcoI	YGGCCR	2 cut(s)	219, 453
AcsI	RAATTY	2 cut(s)	206, 467
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	3 cut(s)	380, 474, 524
AfiI	CCNNNNNNNGG	2 cut(s)	296, 297
AflIII	ACRYGT	1 cut(s)	655
AgsI	TTSAA	4 cut(s)	212, 349, 416, 653
AjnI	CCWGG	4 cut(s)	295, 339, 499, 760
AluBI	AGCT	3 cut(s)	419, 569, 706
AluI	AGCT	3 cut(s)	419, 569, 706
Alw26I	GTCTC	2 cut(s)	28, 723
AlwI	GGATC	2 cut(s)	150, 233
AoxI	GGCC	3 cut(s)	219, 436, 453
ApeKI	GCWGC	5 cut(s)	7, 10, 98, 177, 635
ApoI	RAATTY	2 cut(s)	206, 467
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	2 cut(s)	64, 676
BalI	TGGCCA	1 cut(s)	455
BbsI	GAAGAC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	110, 164, 622
BccI	CCATC	3 cut(s)	70, 211, 544
BcgI	CGANNNNNNTGC	4 cut(s)	478, 512, 538, 572
BciT130I	CCWGG	4 cut(s)	297, 341, 501, 762
BciVI	GTATCC	2 cut(s)	328, 346
BclI	TGATCA	1 cut(s)	594
BcoDI	GTCTC	2 cut(s)	28, 723
BfaI	CTAG	2 cut(s)	248, 420
BfmI	CTRYAG	1 cut(s)	570
BfuAI	ACCTGC	1 cut(s)	398
BfuI	GTATCC	2 cut(s)	328, 346
BglI	GCCNNNNNGGC	1 cut(s)	461
BisI	GCNGC	6 cut(s)	8, 11, 99, 178, 222, 636
BlsI	GCNGC	6 cut(s)	9, 12, 100, 179, 223, 637
BmcAI	AGTACT	1 cut(s)	524
Bme1390I	CCNGG	4 cut(s)	297, 341, 501, 762
BmgT120I	GGNCC	1 cut(s)	437
BmrFI	CCNGG	4 cut(s)	297, 341, 501, 762
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	296, 339, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 297
Bse1I	ACTGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	609
BseBI	CCWGG	4 cut(s)	297, 341, 501, 762
BseDI	CCNNGG	3 cut(s)	296, 339, 500
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	2 cut(s)	296, 297
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	110, 164, 622
BsgI	GTGCAG	1 cut(s)	163
BshFI	GGCC	3 cut(s)	221, 438, 455
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	2 cut(s)	296, 297
BsmAI	GTCTC	2 cut(s)	28, 723
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	3 cut(s)	221, 438, 455
Bsp143I	GATC	4 cut(s)	155, 238, 594, 604
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	3 cut(s)	221, 438, 455
BspCNI	CTCAG	1 cut(s)	38
BspMI	ACCTGC	1 cut(s)	398
BspPI	GGATC	2 cut(s)	150, 233
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	3 cut(s)	296, 339, 500
BssMI	GATC	4 cut(s)	155, 238, 594, 604
Bst2UI	CCWGG	4 cut(s)	297, 341, 501, 762
Bst4CI	ACNGT	2 cut(s)	22, 184
Bst6I	CTCTTC	1 cut(s)	513
BstDEI	CTNAG	2 cut(s)	25, 133
BstF5I	GGATG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	4 cut(s)	158, 241, 597, 607
BstMAI	GTCTC	2 cut(s)	28, 723
BstMBI	GATC	4 cut(s)	155, 238, 594, 604
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 257, 461, 575, 764
BstNI	CCWGG	4 cut(s)	297, 341, 501, 762
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	4 cut(s)	295, 339, 499, 760
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	3 cut(s)	110, 164, 622
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuI	GTATCC	2 cut(s)	328, 346
BsuRI	GGCC	3 cut(s)	221, 438, 455
BtsCI	GGATG	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	695
BtsIMutI	CAGTG	1 cut(s)	695
BveI	ACCTGC	1 cut(s)	398
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	437
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	3 cut(s)	379, 473, 523
CviAII	CATG	2 cut(s)	560, 768
CviQI	GTAC	3 cut(s)	379, 473, 523
DdeI	CTNAG	2 cut(s)	25, 133
DpnI	GATC	4 cut(s)	157, 240, 596, 606
DpnII	GATC	4 cut(s)	155, 238, 594, 604
DraI	TTTAAA	1 cut(s)	112
EaeI	YGGCCR	2 cut(s)	219, 453
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco57I	CTGAAG	1 cut(s)	537
EcoRII	CCWGG	4 cut(s)	295, 339, 499, 760
EcoT22I	ATGCAT	1 cut(s)	561
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	2 cut(s)	563, 771
FaiI	YATR	6 cut(s)	278, 305, 479, 537, 561, 769
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	2 cut(s)	559, 767
FbaI	TGATCA	1 cut(s)	594
Fnu4HI	GCNGC	6 cut(s)	8, 11, 99, 178, 222, 636
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	6 cut(s)	8, 11, 99, 178, 222, 636
FspBI	CTAG	2 cut(s)	248, 420
FspI	TGCGCA	1 cut(s)	14
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	6 cut(s)	8, 11, 99, 178, 222, 636
GsuI	CTGGAG	1 cut(s)	639
HaeIII	GGCC	3 cut(s)	221, 438, 455
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	563, 771
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	197, 273
HphI	GGTGA	2 cut(s)	64, 676
Hpy188I	TCNGA	3 cut(s)	204, 272, 517
Hpy188III	TCNNGA	4 cut(s)	212, 236, 332, 716
HpyAV	CCTTC	3 cut(s)	76, 499, 661
HpyCH4III	ACNGT	2 cut(s)	22, 184
HpyCH4IV	ACGT	2 cut(s)	586, 655
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 257, 461, 575, 764
HpyF3I	CTNAG	2 cut(s)	25, 133
HpySE526I	ACGT	2 cut(s)	586, 655
Hsp92II	CATG	2 cut(s)	563, 771
HspAI	GCGC	1 cut(s)	13
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	4 cut(s)	155, 238, 594, 604
LmnI	GCTCC	2 cut(s)	566, 764
Lsp1109I	GCAGC	3 cut(s)	110, 164, 622
MaeI	CTAG	2 cut(s)	248, 420
MaeII	ACGT	2 cut(s)	586, 655
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	4 cut(s)	157, 240, 596, 606
MboI	GATC	4 cut(s)	155, 238, 594, 604
MboII	GAAGA	3 cut(s)	23, 239, 530
MflI	RGATCY	1 cut(s)	238
MlsI	TGGCCA	1 cut(s)	455
MluCI	AATT	5 cut(s)	148, 206, 255, 467, 690
MluNI	TGGCCA	1 cut(s)	455
MlyI	GAGTC	2 cut(s)	191, 282
MnlI	CCTC	9 cut(s)	67, 173, 183, 252, 271, 369, 416, 450, 614
Mox20I	TGGCCA	1 cut(s)	455
Mph1103I	ATGCAT	1 cut(s)	561
MscI	TGGCCA	1 cut(s)	455
MseI	TTAA	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	455
MspR9I	CCNGG	4 cut(s)	297, 341, 501, 762
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	4 cut(s)	297, 341, 501, 762
MwoI	GCNNNNNNNGC	5 cut(s)	230, 257, 461, 575, 764
NdeII	GATC	4 cut(s)	155, 238, 594, 604
NlaIII	CATG	2 cut(s)	563, 771
NmuCI	GTSAC	1 cut(s)	194
NsbI	TGCGCA	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	561
NspI	RCATGY	1 cut(s)	563
PctI	GAATGC	1 cut(s)	140
PkrI	GCNGC	6 cut(s)	9, 12, 100, 179, 223, 637
PleI	GAGTC	2 cut(s)	191, 281
PpsI	GAGTC	2 cut(s)	191, 281
Psp6I	CCWGG	4 cut(s)	295, 339, 499, 760
PspGI	CCWGG	4 cut(s)	295, 339, 499, 760
PspPI	GGNCC	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	3 cut(s)	380, 474, 524
RsaNI	GTAC	3 cut(s)	379, 473, 523
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	6 cut(s)	8, 11, 99, 178, 222, 636
Sau3AI	GATC	4 cut(s)	155, 238, 594, 604
Sau96I	GGNCC	1 cut(s)	437
ScaI	AGTACT	1 cut(s)	524
SchI	GAGTC	2 cut(s)	191, 282
ScrFI	CCNGG	4 cut(s)	297, 341, 501, 762
SfcI	CTRYAG	1 cut(s)	570
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
Sse9I	AATT	5 cut(s)	148, 206, 255, 467, 690
SsiI	CCGC	1 cut(s)	222
SspMI	CTAG	2 cut(s)	248, 420
StyD4I	CCNGG	4 cut(s)	295, 339, 499, 760
TaaI	ACNGT	2 cut(s)	22, 184
TaiI	ACGT	2 cut(s)	589, 658
TasI	AATT	5 cut(s)	148, 206, 255, 467, 690
TatI	WGTACW	1 cut(s)	522
TauI	GCSGC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	702
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	5 cut(s)	7, 10, 98, 177, 635
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	58
TspGWI	ACGGA	2 cut(s)	96, 726
TspRI	CASTG	1 cut(s)	702
XapI	RAATTY	2 cut(s)	206, 467
XceI	RCATGY	1 cut(s)	563
XspI	CTAG	2 cut(s)	248, 420
ZrmI	AGTACT	1 cut(s)	524
Zsp2I	ATGCAT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.