Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007062

Physical Location & Seq

Genomic Coordinates Reverse (-)

7180417 .. 7183623

Gene Structure 3207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1086300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCGTAAGAGTGAAGCGCTGAAAGTTGAAGAAATGGCAGCGGAAGACGGTCAGGATCCTCGCCTTGCTAGAATTTCATCTGCTATCAGAGTCATCCCGGACTTCCCCAAGCCAGGGATTATGTTCTATGATATTACCACATTGCTCCTGGATACCAAGGCTTTCAAGGACACCATTGATTTGTTTGTTGAGAGGTACAAAGATAAAGAAATCTCTGTTGTTGCAGGTGTTGAAGCTAGAGGGTTTATATTTGGCCCTCCTATTGCTTTGGCCATTGGGGCAAAATTTGTGCCCATGAGGAAACCAAACAAGTTGCCTGGGAAGGTTATTTCTGAAGAGTACTCTTTGGAGTATGGAACAGATATTATGGAAATGCACGTGGGAGCTGTAGAAGCGGGTGAACGTGCCTTGATCATAGATGACCTCATTGCAACTGGGGGAACCTTGGGTGCTGCCATCAAGCTACTTGAGCGTGTAGGGGTGCATGTCGTTGAGTGCGCCTGTGTAATTGAATTACCAGAACTAAAGGGTCGGGAACGACTGGGGGAGAAACCATTGTTTGTTCTAGTTAGCGGAGACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009308 GO:0009507 GO:0009536 GO:0009690 GO:0009987 GO:0010817 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032261 GO:0034641 GO:0034654 GO:0034754 GO:0042445 GO:0043094 GO:0043101 GO:0043173 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044209 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046390 GO:0046483 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

195

Amino Acids

21.17

Weight (kDa)

5.13

Isoelectric Point (pI)

23.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	54 - 180	1.2e-16	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27450 AT1G27450 AT1G27450 AT1G27450
fragaria_vesca	FvH4_2g33240 FvH4_2g33240 FvH4_2g33240
malus_domestica	MD08G1086300.v1.1 MD08G1086400.v1.1 MD15G1071300.v1.1
prunus_persica	Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1
pyrus_communis	pycom08g07090 pycom15g06710
rosa_chinensis	RchiOBHm_Chr6g0309401
rosa_laevigata	RLG00000010569
rosa_multiflora	Rmu_sc0012466.1_g000005 Rmu_sc0017306.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159430
rosa_rugosa	Rorug06G0371900
rosa_samantha	Rh6BG494200 Rh6CG499200 Rh6DG485400
rosa_wichuraiana	Rw6G042240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	215
AciI	CCGC	3 cut(s)	41, 395, 573
AclWI	GGATC	2 cut(s)	50, 63
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	2 cut(s)	72, 284
AcuI	CTGAAG	1 cut(s)	354
AcvI	CACGTG	1 cut(s)	379
AfaI	GTAC	2 cut(s)	197, 341
AfeI	AGCGCT	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	113, 114
AgsI	TTSAA	4 cut(s)	29, 166, 233, 512
AjnI	CCWGG	3 cut(s)	112, 147, 316
AluBI	AGCT	3 cut(s)	236, 386, 463
AluI	AGCT	3 cut(s)	236, 386, 463
Alw26I	GTCTC	1 cut(s)	570
AlwI	GGATC	2 cut(s)	50, 63
Aor51HI	AGCGCT	1 cut(s)	18
AoxI	GGCC	2 cut(s)	253, 270
ApeKI	GCWGC	2 cut(s)	38, 452
ApoI	RAATTY	2 cut(s)	72, 284
AspLEI	GCGC	2 cut(s)	19, 500
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	294
BalI	TGGCCA	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	55
BbrPI	CACGTG	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	50, 439
BccI	CCATC	1 cut(s)	464
BciT130I	CCWGG	3 cut(s)	114, 149, 318
BciVI	GTATCC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	411
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	570
BfaI	CTAG	3 cut(s)	69, 237, 566
BfmI	CTRYAG	1 cut(s)	387
BfoI	RGCGCY	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	145
BglI	GCCNNNNNGGC	1 cut(s)	278
BisI	GCNGC	2 cut(s)	39, 453
BlsI	GCNGC	2 cut(s)	40, 454
BmcAI	AGTACT	1 cut(s)	341
Bme1390I	CCNGG	4 cut(s)	98, 114, 149, 318
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	57, 442
BmrFI	CCNGG	4 cut(s)	98, 114, 149, 318
BmrI	ACTGGG	2 cut(s)	444, 551
BmuI	ACTGGG	2 cut(s)	444, 551
BpiI	GAAGAC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	379
BsaJI	CCNNGG	4 cut(s)	113, 156, 317, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 114
Bse1I	ACTGG	2 cut(s)	439, 546
Bse3DI	GCAATG	2 cut(s)	140, 426
BseBI	CCWGG	3 cut(s)	114, 149, 318
BseDI	CCNNGG	4 cut(s)	113, 156, 317, 444
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	2 cut(s)	113, 114
BseMI	GCAATG	2 cut(s)	140, 426
BseNI	ACTGG	2 cut(s)	439, 546
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	50, 439
BshFI	GGCC	2 cut(s)	255, 272
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	113, 114
BsmAI	GTCTC	1 cut(s)	570
BsmBI	CGTCTC	1 cut(s)	570
BsnI	GGCC	2 cut(s)	255, 272
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	55, 411
BspACI	CCGC	3 cut(s)	41, 395, 573
BspANI	GGCC	2 cut(s)	255, 272
BspLI	GGNNCC	2 cut(s)	57, 442
BspMI	ACCTGC	1 cut(s)	215
BspPI	GGATC	2 cut(s)	50, 63
BsrDI	GCAATG	2 cut(s)	140, 426
BsrI	ACTGG	2 cut(s)	439, 546
BssECI	CCNNGG	4 cut(s)	113, 156, 317, 444
BssMI	GATC	2 cut(s)	55, 411
BssT1I	CCWWGG	2 cut(s)	156, 444
Bst2UI	CCWGG	3 cut(s)	114, 149, 318
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	2 cut(s)	19, 500
BstKTI	GATC	2 cut(s)	58, 414
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	2 cut(s)	55, 411
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 392, 469
BstNI	CCWGG	3 cut(s)	114, 149, 318
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	4 cut(s)	96, 112, 147, 316
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	50, 439
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	255, 272
BtsCI	GGATG	1 cut(s)	93
BveI	ACCTGC	1 cut(s)	215
CfoI	GCGC	2 cut(s)	19, 500
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	196, 340
CviAII	CATG	3 cut(s)	295, 485, 582
CviJI	RGCY	7 cut(s)	112, 161, 236, 255, 272, 386, 463
CviKI_1	RGCY	7 cut(s)	112, 161, 236, 255, 272, 386, 463
CviQI	GTAC	2 cut(s)	196, 340
DpnI	GATC	2 cut(s)	57, 413
DpnII	GATC	2 cut(s)	55, 411
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco130I	CCWWGG	2 cut(s)	156, 444
Eco47III	AGCGCT	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	354
Eco72I	CACGTG	1 cut(s)	379
EcoRII	CCWGG	3 cut(s)	112, 147, 316
EcoT14I	CCWWGG	2 cut(s)	156, 444
ErhI	CCWWGG	2 cut(s)	156, 444
Esp3I	CGTCTC	1 cut(s)	570
FaeI	CATG	3 cut(s)	298, 488, 585
FaiI	YATR	9 cut(s)	122, 129, 248, 296, 354, 368, 416, 486, 583
FatI	CATG	3 cut(s)	294, 484, 581
FauI	CCCGC	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	411
Fnu4HI	GCNGC	2 cut(s)	39, 453
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	2 cut(s)	39, 453
FspBI	CTAG	3 cut(s)	69, 237, 566
GlaI	GCGC	2 cut(s)	18, 499
GluI	GCNGC	2 cut(s)	39, 453
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	255, 272
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	2 cut(s)	19, 500
Hin1II	CATG	3 cut(s)	298, 488, 585
Hin6I	GCGC	2 cut(s)	17, 498
HinP1I	GCGC	2 cut(s)	17, 498
HinfI	GANTC	1 cut(s)	90
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188I	TCNGA	2 cut(s)	89, 334
Hpy188III	TCNNGA	2 cut(s)	53, 533
Hpy8I	GTNNAC	1 cut(s)	401
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	2 cut(s)	378, 403
HpyCH4V	TGCA	4 cut(s)	224, 376, 431, 484
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 392, 469
HpySE526I	ACGT	2 cut(s)	378, 403
Hsp92II	CATG	3 cut(s)	298, 488, 585
HspAI	GCGC	2 cut(s)	17, 498
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	55, 411
LmnI	GCTCC	2 cut(s)	150, 383
Lsp1109I	GCAGC	2 cut(s)	50, 439
MaeI	CTAG	3 cut(s)	69, 237, 566
MaeII	ACGT	2 cut(s)	378, 403
MalI	GATC	2 cut(s)	57, 413
MboI	GATC	2 cut(s)	55, 411
MboII	GAAGA	3 cut(s)	41, 56, 347
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	4 cut(s)	72, 284, 507, 512
MluNI	TGGCCA	1 cut(s)	272
MlyI	GAGTC	1 cut(s)	99
MnlI	CCTC	6 cut(s)	69, 186, 233, 267, 291, 434
Mox20I	TGGCCA	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	4 cut(s)	98, 114, 149, 318
MvaI	CCWGG	3 cut(s)	114, 149, 318
MwoI	GCNNNNNNNGC	3 cut(s)	278, 392, 469
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	2 cut(s)	55, 411
NlaIII	CATG	3 cut(s)	298, 488, 585
NlaIV	GGNNCC	2 cut(s)	57, 442
NspI	RCATGY	1 cut(s)	488
PaqCI	CACCTGC	1 cut(s)	215
PfoI	TCCNGGA	2 cut(s)	96, 147
PkrI	GCNGC	2 cut(s)	40, 454
PleI	GAGTC	1 cut(s)	98
PmaCI	CACGTG	1 cut(s)	379
PmlI	CACGTG	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	379
Psp6I	CCWGG	3 cut(s)	112, 147, 316
PspCI	CACGTG	1 cut(s)	379
PspGI	CCWGG	3 cut(s)	112, 147, 316
PspN4I	GGNNCC	2 cut(s)	57, 442
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	2 cut(s)	197, 341
RsaNI	GTAC	2 cut(s)	196, 340
SatI	GCNGC	2 cut(s)	39, 453
Sau3AI	GATC	2 cut(s)	55, 411
Sau96I	GGNCC	1 cut(s)	254
ScaI	AGTACT	1 cut(s)	341
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	4 cut(s)	98, 114, 149, 318
SduI	GDGCHC	1 cut(s)	294
SfcI	CTRYAG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	4 cut(s)	72, 284, 507, 512
SsiI	CCGC	3 cut(s)	41, 395, 573
SspMI	CTAG	3 cut(s)	69, 237, 566
StyD4I	CCNGG	4 cut(s)	96, 112, 147, 316
StyI	CCWWGG	2 cut(s)	156, 444
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	2 cut(s)	381, 406
TasI	AATT	4 cut(s)	72, 284, 507, 512
TatI	WGTACW	1 cut(s)	339
TseI	GCWGC	2 cut(s)	38, 452
TspDTI	ATGAA	1 cut(s)	66
XapI	RAATTY	2 cut(s)	72, 284
XceI	RCATGY	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XspI	CTAG	3 cut(s)	69, 237, 566
ZrmI	AGTACT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.