Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007062

Physical Location & Seq

Genomic Coordinates Reverse (-)

5707432 .. 5709939

Gene Structure 2508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g07090.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTTTCAAAGCACCTCATTTCTTTTCTCGTCAAATTCCTTCACTTTCTCACACGCAGTCGCCTTCCGCCCTCCCGCAGCTAGAACTTCGTCCTCCGCCGCCGCGCTGCCCTCCATTCGTTTCCCAAATTACAGATCCGCTCGCCCTCCCGCGCGCTGCTCTGTGAGTAAGAGTGAAGCGCTGAAAGTTGAAGCAATGGCAGCGGAAGACAGTAGGGATCCTCGCCTTGCTAGAATTTCATCTGCTATCAGGGTCATACCAGACTTCCCCAAGCCAGGGATTTTGTTCCAAGATATTACTACATTGCTCCTGGATACCAAGGCTTTCAAGGACACCATTGATTTGTTTGTTGAGAGGTACAAGGACAAAGAAATCTCTGTTGTTGCAGGTGTTGAAGCTAGAGGGTTTATATTTGGCCCTCCTATTGCCTTGGCCATTGGGGCAAAATTTGTGCCCATGAGGAAACCAAAGAAGTTGCCTGGGAAGGTTATTTCTGAAGAGTACTCTTTGGAGTATGGAACAGATACTATGGAGATGCACGTGGGAGCTGTGGAAGCAGGTGAACGTGCCTTGATCATAGATGACCTCATTGCAACTGGGGGAACCTTGGGTGCTGCCATCAGGCTACTTGAGCGTGTAGGGGTGCATGTCGTTGAGTGTGCCTGTGTAATTGAATTACCAGAACTAAAGGGTCGGGAACGATTGGCGGAGAAACCATTGTTTGTTCTAGTTAGCGGAGACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009308 GO:0009507 GO:0009536 GO:0009690 GO:0009987 GO:0010817 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032261 GO:0034641 GO:0034654 GO:0034754 GO:0042445 GO:0043094 GO:0043101 GO:0043173 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044209 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046390 GO:0046483 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

249

Amino Acids

26.93

Weight (kDa)

8.4

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27450 AT1G27450 AT1G27450 AT1G27450
fragaria_vesca	FvH4_2g33240 FvH4_2g33240 FvH4_2g33240
malus_domestica	MD08G1086300.v1.1 MD08G1086400.v1.1 MD15G1071300.v1.1
prunus_persica	Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1
pyrus_communis	pycom08g07090 pycom15g06710
rosa_chinensis	RchiOBHm_Chr6g0309401
rosa_laevigata	RLG00000010569
rosa_multiflora	Rmu_sc0012466.1_g000005 Rmu_sc0017306.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159430
rosa_rugosa	Rorug06G0371900
rosa_samantha	Rh6BG494200 Rh6CG499200 Rh6DG485400
rosa_wichuraiana	Rw6G042240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	377, 548
Acc36I	ACCTGC	2 cut(s)	377, 548
AccBSI	CCGCTC	1 cut(s)	140
AccII	CGCG	3 cut(s)	104, 152, 154
AclWI	GGATC	3 cut(s)	129, 212, 225
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	3 cut(s)	34, 234, 446
AcuI	CTGAAG	1 cut(s)	516
AcvI	CACGTG	1 cut(s)	541
AfaI	GTAC	2 cut(s)	359, 503
AfeI	AGCGCT	1 cut(s)	180
AfiI	CCNNNNNNNGG	2 cut(s)	275, 276
AgsI	TTSAA	5 cut(s)	8, 191, 328, 395, 674
AjnI	CCWGG	3 cut(s)	274, 309, 478
AluBI	AGCT	3 cut(s)	80, 398, 548
AluI	AGCT	3 cut(s)	80, 398, 548
Alw26I	GTCTC	1 cut(s)	732
AlwI	GGATC	3 cut(s)	129, 212, 225
Aor51HI	AGCGCT	1 cut(s)	180
AoxI	GGCC	2 cut(s)	415, 432
ApeKI	GCWGC	5 cut(s)	77, 106, 156, 200, 614
ApoI	RAATTY	3 cut(s)	34, 234, 446
AspLEI	GCGC	4 cut(s)	106, 154, 156, 181
AspS9I	GGNCC	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	572
BaeGI	GKGCMC	1 cut(s)	456
BalI	TGGCCA	1 cut(s)	434
BamHI	GGATCC	1 cut(s)	217
BbrPI	CACGTG	1 cut(s)	541
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	5 cut(s)	89, 93, 143, 212, 601
BccI	CCATC	1 cut(s)	626
BciT130I	CCWGG	3 cut(s)	276, 311, 480
BciVI	GTATCC	1 cut(s)	307
BclI	TGATCA	1 cut(s)	573
BcoDI	GTCTC	1 cut(s)	732
BfaI	CTAG	4 cut(s)	81, 231, 399, 728
BfoI	RGCGCY	1 cut(s)	182
BfuAI	ACCTGC	2 cut(s)	377, 548
BfuI	GTATCC	1 cut(s)	307
BglI	GCCNNNNNGGC	1 cut(s)	440
BisI	GCNGC	7 cut(s)	78, 99, 102, 107, 157, 201, 615
BlsI	GCNGC	7 cut(s)	79, 100, 103, 108, 158, 202, 616
BmcAI	AGTACT	1 cut(s)	503
Bme1390I	CCNGG	3 cut(s)	276, 311, 480
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	2 cut(s)	219, 604
BmrFI	CCNGG	3 cut(s)	276, 311, 480
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	1 cut(s)	525
BmuI	ACTGGG	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	650
BsaAI	YACGTR	1 cut(s)	541
BsaJI	CCNNGG	5 cut(s)	275, 318, 429, 479, 606
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 276
Bse1I	ACTGG	1 cut(s)	601
Bse3DI	GCAATG	3 cut(s)	201, 302, 588
BseBI	CCWGG	3 cut(s)	276, 311, 480
BseDI	CCNNGG	5 cut(s)	275, 318, 429, 479, 606
BseLI	CCNNNNNNNGG	2 cut(s)	275, 276
BseMI	GCAATG	3 cut(s)	201, 302, 588
BseNI	ACTGG	1 cut(s)	601
BsePI	GCGCGC	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	456
BseXI	GCAGC	5 cut(s)	89, 93, 143, 212, 601
Bsh1236I	CGCG	3 cut(s)	104, 152, 154
BshFI	GGCC	2 cut(s)	417, 434
BslI	CCNNNNNNNGG	2 cut(s)	275, 276
BsmAI	GTCTC	1 cut(s)	732
BsmBI	CGTCTC	1 cut(s)	732
BsnI	GGCC	2 cut(s)	417, 434
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	3 cut(s)	134, 217, 573
BspANI	GGCC	2 cut(s)	417, 434
BspFNI	CGCG	3 cut(s)	104, 152, 154
BspLI	GGNNCC	2 cut(s)	219, 604
BspMI	ACCTGC	2 cut(s)	377, 548
BspPI	GGATC	3 cut(s)	129, 212, 225
BsrBI	CCGCTC	1 cut(s)	140
BsrDI	GCAATG	3 cut(s)	201, 302, 588
BsrI	ACTGG	1 cut(s)	601
BssECI	CCNNGG	5 cut(s)	275, 318, 429, 479, 606
BssHII	GCGCGC	1 cut(s)	152
BssMI	GATC	3 cut(s)	134, 217, 573
BssT1I	CCWWGG	3 cut(s)	318, 429, 606
Bst2UI	CCWGG	3 cut(s)	276, 311, 480
Bst4CI	ACNGT	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	492
BstBAI	YACGTR	1 cut(s)	541
BstC8I	GCNNGC	2 cut(s)	142, 154
BstFNI	CGCG	3 cut(s)	104, 152, 154
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	4 cut(s)	106, 154, 156, 181
BstKTI	GATC	3 cut(s)	137, 220, 576
BstMAI	GTCTC	1 cut(s)	732
BstMBI	GATC	3 cut(s)	134, 217, 573
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 440, 554, 631
BstNI	CCWGG	3 cut(s)	276, 311, 480
BstNSI	RCATGY	1 cut(s)	650
BstSCI	CCNGG	3 cut(s)	274, 309, 478
BstSLI	GKGCMC	1 cut(s)	456
BstUI	CGCG	3 cut(s)	104, 152, 154
BstV1I	GCAGC	5 cut(s)	89, 93, 143, 212, 601
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	2 cut(s)	134, 217
BstYI	RGATCY	2 cut(s)	134, 217
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	417, 434
BveI	ACCTGC	2 cut(s)	377, 548
Cac8I	GCNNGC	2 cut(s)	142, 154
CfoI	GCGC	4 cut(s)	106, 154, 156, 181
Cfr13I	GGNCC	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	358, 502
CviAII	CATG	3 cut(s)	457, 647, 744
CviJI	RGCY	8 cut(s)	80, 274, 323, 398, 417, 434, 548, 625
CviKI_1	RGCY	8 cut(s)	80, 274, 323, 398, 417, 434, 548, 625
CviQI	GTAC	2 cut(s)	358, 502
DpnI	GATC	3 cut(s)	136, 219, 575
DpnII	GATC	3 cut(s)	134, 217, 573
EaeI	YGGCCR	1 cut(s)	432
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
EciI	GGCGGA	3 cut(s)	56, 85, 722
Eco130I	CCWWGG	3 cut(s)	318, 429, 606
Eco47III	AGCGCT	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	516
Eco72I	CACGTG	1 cut(s)	541
EcoRII	CCWGG	3 cut(s)	274, 309, 478
EcoT14I	CCWWGG	3 cut(s)	318, 429, 606
ErhI	CCWWGG	3 cut(s)	318, 429, 606
Esp3I	CGTCTC	1 cut(s)	732
FaeI	CATG	3 cut(s)	460, 650, 747
FaiI	YATR	8 cut(s)	257, 410, 458, 516, 530, 578, 648, 745
FatI	CATG	3 cut(s)	456, 646, 743
FauI	CCCGC	2 cut(s)	82, 157
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	7 cut(s)	78, 99, 102, 107, 157, 201, 615
Fsp4HI	GCNGC	7 cut(s)	78, 99, 102, 107, 157, 201, 615
FspBI	CTAG	4 cut(s)	81, 231, 399, 728
GlaI	GCGC	4 cut(s)	105, 153, 155, 180
GluI	GCNGC	7 cut(s)	78, 99, 102, 107, 157, 201, 615
HaeII	RGCGCY	1 cut(s)	182
HaeIII	GGCC	2 cut(s)	417, 434
HhaI	GCGC	4 cut(s)	106, 154, 156, 181
Hin1II	CATG	3 cut(s)	460, 650, 747
Hin6I	GCGC	4 cut(s)	104, 152, 154, 179
HinP1I	GCGC	4 cut(s)	104, 152, 154, 179
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188I	TCNGA	1 cut(s)	496
Hpy188III	TCNNGA	1 cut(s)	695
Hpy8I	GTNNAC	1 cut(s)	563
HpyAV	CCTTC	3 cut(s)	49, 73, 478
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	2 cut(s)	540, 565
HpyCH4V	TGCA	4 cut(s)	386, 538, 593, 646
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 440, 554, 631
HpySE526I	ACGT	2 cut(s)	540, 565
Hsp92II	CATG	3 cut(s)	460, 650, 747
HspAI	GCGC	4 cut(s)	104, 152, 154, 179
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	3 cut(s)	134, 217, 573
LmnI	GCTCC	2 cut(s)	312, 545
Lsp1109I	GCAGC	5 cut(s)	89, 93, 143, 212, 601
LweI	GCATC	1 cut(s)	525
MaeI	CTAG	4 cut(s)	81, 231, 399, 728
MaeII	ACGT	2 cut(s)	540, 565
MalI	GATC	3 cut(s)	136, 219, 575
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	3 cut(s)	134, 217, 573
MboII	GAAGA	2 cut(s)	218, 509
MflI	RGATCY	2 cut(s)	134, 217
MhlI	GDGCHC	1 cut(s)	456
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	6 cut(s)	34, 127, 234, 446, 669, 674
MluNI	TGGCCA	1 cut(s)	434
Mox20I	TGGCCA	1 cut(s)	434
MscI	TGGCCA	1 cut(s)	434
Msp20I	TGGCCA	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	203
MspR9I	CCNGG	3 cut(s)	276, 311, 480
MvaI	CCWGG	3 cut(s)	276, 311, 480
MvnI	CGCG	3 cut(s)	104, 152, 154
MwoI	GCNNNNNNNGC	4 cut(s)	200, 440, 554, 631
NdeII	GATC	3 cut(s)	134, 217, 573
NlaIII	CATG	3 cut(s)	460, 650, 747
NlaIV	GGNNCC	2 cut(s)	219, 604
NspI	RCATGY	1 cut(s)	650
PaqCI	CACCTGC	2 cut(s)	377, 548
PauI	GCGCGC	1 cut(s)	152
PfoI	TCCNGGA	1 cut(s)	309
PkrI	GCNGC	7 cut(s)	79, 100, 103, 108, 158, 202, 616
PmaCI	CACGTG	1 cut(s)	541
PmlI	CACGTG	1 cut(s)	541
Ppu21I	YACGTR	1 cut(s)	541
Psp6I	CCWGG	3 cut(s)	274, 309, 478
PspCI	CACGTG	1 cut(s)	541
PspGI	CCWGG	3 cut(s)	274, 309, 478
PspN4I	GGNNCC	2 cut(s)	219, 604
PspPI	GGNCC	1 cut(s)	416
PsuI	RGATCY	2 cut(s)	134, 217
PteI	GCGCGC	1 cut(s)	152
RsaI	GTAC	2 cut(s)	359, 503
RsaNI	GTAC	2 cut(s)	358, 502
SatI	GCNGC	7 cut(s)	78, 99, 102, 107, 157, 201, 615
Sau3AI	GATC	3 cut(s)	134, 217, 573
Sau96I	GGNCC	1 cut(s)	416
ScaI	AGTACT	1 cut(s)	503
ScrFI	CCNGG	3 cut(s)	276, 311, 480
SduI	GDGCHC	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	6 cut(s)	34, 127, 234, 446, 669, 674
SspMI	CTAG	4 cut(s)	81, 231, 399, 728
StyD4I	CCNGG	3 cut(s)	274, 309, 478
StyI	CCWWGG	3 cut(s)	318, 429, 606
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	2 cut(s)	543, 568
TasI	AATT	6 cut(s)	34, 127, 234, 446, 669, 674
TatI	WGTACW	1 cut(s)	501
TauI	GCSGC	2 cut(s)	101, 104
TseI	GCWGC	5 cut(s)	77, 106, 156, 200, 614
TspDTI	ATGAA	1 cut(s)	228
XapI	RAATTY	3 cut(s)	34, 234, 446
XceI	RCATGY	1 cut(s)	650
XspI	CTAG	4 cut(s)	81, 231, 399, 728
ZrmI	AGTACT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.