Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007062

Physical Location & Seq

Genomic Coordinates Reverse (-)

51854902 .. 51855144

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0371900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGATATGGTGGAGACCTTGGAGAAGCTCTTATTATCATCAAGTAAAGTAGAGTTGCCTCTCAAGCAATCTGAAGAGCAGTTAGTTACAATGTTTCCCAGGTTGCTTGATCTTGTTATAGAGGAGGAAAAGAGTACCACTACGATGTTTAAACCCCTCTTTGGAGATCTAAAATCCACACTGCAGTCCTTAAAACCCTTCGCCGAGAAGATAGAGGTATTGGATCTCGCAGAGGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009308 GO:0009507 GO:0009536 GO:0009690 GO:0009987 GO:0010817 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032261 GO:0034641 GO:0034654 GO:0034754 GO:0042445 GO:0043094 GO:0043101 GO:0043173 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044209 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046390 GO:0046483 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

80

Amino Acids

9.17

Weight (kDa)

4.48

Isoelectric Point (pI)

63.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	32 - 76	6.5e-06	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27450 AT1G27450 AT1G27450 AT1G27450
fragaria_vesca	FvH4_2g33240 FvH4_2g33240 FvH4_2g33240
malus_domestica	MD08G1086300.v1.1 MD08G1086400.v1.1 MD15G1071300.v1.1
prunus_persica	Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1
pyrus_communis	pycom08g07090 pycom15g06710
rosa_chinensis	RchiOBHm_Chr6g0309401
rosa_laevigata	RLG00000010569
rosa_multiflora	Rmu_sc0012466.1_g000005 Rmu_sc0017306.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159430
rosa_rugosa	Rorug06G0371900
rosa_samantha	Rh6BG494200 Rh6CG499200 Rh6DG485400
rosa_wichuraiana	Rw6G042240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	231
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	98
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	182
BglII	AGATCT	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	18, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	2 cut(s)	18, 98
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	109, 166, 223
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	1 cut(s)	231
BspQI	GCTCTTC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	18, 98
BssMI	GATC	3 cut(s)	109, 166, 223
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	69
BstKTI	GATC	3 cut(s)	112, 169, 226
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	3 cut(s)	109, 166, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	182
BstX2I	RGATCY	2 cut(s)	166, 223
BstYI	RGATCY	2 cut(s)	166, 223
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	135
CviJI	RGCY	1 cut(s)	28
CviKI_1	RGCY	1 cut(s)	28
CviQI	GTAC	1 cut(s)	135
DpnI	GATC	3 cut(s)	111, 168, 225
DpnII	GATC	3 cut(s)	109, 166, 223
DraI	TTTAAA	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaiI	YATR	2 cut(s)	8, 119
Hpy188I	TCNGA	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	208
HpyCH4V	TGCA	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	109, 166, 223
LguI	GCTCTTC	1 cut(s)	69
LpnPI	CCDG	2 cut(s)	85, 112
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	3 cut(s)	111, 168, 225
MboI	GATC	3 cut(s)	109, 166, 223
MboII	GAAGA	2 cut(s)	86, 220
MflI	RGATCY	2 cut(s)	166, 223
MnlI	CCTC	7 cut(s)	69, 115, 118, 167, 208, 226, 229
MseI	TTAA	2 cut(s)	150, 191
MslI	CAYNNNNRTG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	100
MssI	GTTTAAAC	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	3 cut(s)	109, 166, 223
NmeAIII	GCCGAG	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	69
PmeI	GTTTAAAC	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	186
PsuI	RGATCY	2 cut(s)	166, 223
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	143
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	150, 191
Sau3AI	GATC	3 cut(s)	109, 166, 223
ScrFI	CCNGG	1 cut(s)	100
SetI	ASST	4 cut(s)	20, 30, 104, 219
SfcI	CTRYAG	1 cut(s)	182
SgeI	CNNG	9 cut(s)	31, 54, 76, 111, 112, 119, 125, 217, 239
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	18
Tru1I	TTAA	2 cut(s)	150, 191
Tru9I	TTAA	2 cut(s)	150, 191
TscAI	CASTG	1 cut(s)	186
TspRI	CASTG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.