Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007062

Physical Location & Seq

Genomic Coordinates Reverse (-)

2692180 .. 2696058

Gene Structure 3879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010569

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTTCAGGACTTCAGGTAGTTATCAAATAGTCCAAAATGCCCCTGCGGTCATCGTGTCAACTTGCATCAAGGCGGACCTAATGATGCTGCTGCGCACCACCGTCTCAATTCTTCTCGGGTCAAACTGGTTGACTTCCTCTCCATCCTTCATCACCAGCACCACCACCTCTCCCACTCTCGCAGCAACTCCGTTTAAAACCAAATCTCATTCTCCCTTGGTTGCATTGCCAAATTACCGACCCACCCTCGCTTCTCCTCGTTGCACCGTGAGTGATAGTGACTCTCTGGAATTTCAAGAGATGGCCGCCGAAGACGCTCAAGATCCTCGCCTAGCGAAAATTGCCTCTGCAATCAGAGTCATACCCGACTTTCCCAAGCCAGGGATTATGTTCCAAGATATTACTACCTTACTTCTGGATACCCAGGCTTTCAAGGATACCATTGATTTGTTTGTTGAGAGGTACAAAGACAAAGAAATCTCTGTTGTTGCAGGTATTGAAGCTAGAGGTTTTATTTTTGGCCCTCCTATTGCATTGGCCATTGGGGCTAAATTTGTACCTATGAGAAAGCCGAATAAGTTGCCTGGGAAGGTTATTTCTGAAGAGTACTCTTTGGAGTATGGAACTGACACGATGGAAATGCATGTGGGAGCTGTAGAAGCTGGAGAACGTGCCTTGATCATTGATGATCTTATTGCAACTGGAGGAACTTTGGGTGCTGCAATCAGGCTACTTGAACGTGTTGGGGTGAAGGTGGTTGAGTGTGCCTGTGTAATTGCACTGCCAGAGCTAAAGGGTCGAGAACGATTGGGAGACAATCCGTTATTTGTTCTCGTCAATGCACCTGGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009308 GO:0009507 GO:0009536 GO:0009690 GO:0009987 GO:0010817 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032261 GO:0034641 GO:0034654 GO:0034754 GO:0042445 GO:0043094 GO:0043101 GO:0043173 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044209 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046390 GO:0046483 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

285

Amino Acids

30.6

Weight (kDa)

5.57

Isoelectric Point (pI)

28.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	142 - 268	1.1e-17	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27450 AT1G27450 AT1G27450 AT1G27450
fragaria_vesca	FvH4_2g33240 FvH4_2g33240 FvH4_2g33240
malus_domestica	MD08G1086300.v1.1 MD08G1086400.v1.1 MD15G1071300.v1.1
prunus_persica	Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1
pyrus_communis	pycom08g07090 pycom15g06710
rosa_chinensis	RchiOBHm_Chr6g0309401
rosa_laevigata	RLG00000010569
rosa_multiflora	Rmu_sc0012466.1_g000005 Rmu_sc0017306.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159430
rosa_rugosa	Rorug06G0371900
rosa_samantha	Rh6BG494200 Rh6CG499200 Rh6DG485400
rosa_wichuraiana	Rw6G042240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	482
AciI	CCGC	3 cut(s)	47, 74, 306
AclWI	GGATC	1 cut(s)	317
AcoI	YGGCCR	2 cut(s)	303, 537
AcsI	RAATTY	2 cut(s)	290, 551
AcuI	CTGAAG	1 cut(s)	621
AfaI	GTAC	3 cut(s)	464, 558, 608
AfiI	CCNNNNNNNGG	2 cut(s)	380, 381
AflIII	ACRYGT	1 cut(s)	739
AgsI	TTSAA	4 cut(s)	296, 433, 500, 737
AjnI	CCWGG	4 cut(s)	379, 423, 583, 844
AluBI	AGCT	4 cut(s)	503, 653, 662, 790
AluI	AGCT	4 cut(s)	503, 653, 662, 790
Alw26I	GTCTC	2 cut(s)	109, 807
AlwI	GGATC	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	3 cut(s)	303, 520, 537
ApeKI	GCWGC	4 cut(s)	88, 91, 182, 719
ApoI	RAATTY	2 cut(s)	290, 551
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	2 cut(s)	76, 521
AsuHPI	GGTGA	2 cut(s)	145, 760
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	318
BbvI	GCAGC	4 cut(s)	75, 78, 194, 706
BccI	CCATC	3 cut(s)	151, 295, 628
BcgI	CGANNNNNNTGC	4 cut(s)	562, 596, 622, 656
BciT130I	CCWGG	4 cut(s)	381, 425, 585, 846
BciVI	GTATCC	2 cut(s)	412, 430
BclI	TGATCA	1 cut(s)	678
BcoDI	GTCTC	2 cut(s)	109, 807
BfaI	CTAG	2 cut(s)	332, 504
BfmI	CTRYAG	1 cut(s)	654
BfuAI	ACCTGC	1 cut(s)	482
BfuI	GTATCC	2 cut(s)	412, 430
BglI	GCCNNNNNGGC	1 cut(s)	545
BisI	GCNGC	5 cut(s)	89, 92, 183, 306, 720
BlsI	GCNGC	5 cut(s)	90, 93, 184, 307, 721
BmcAI	AGTACT	1 cut(s)	608
Bme1390I	CCNGG	4 cut(s)	381, 425, 585, 846
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	76, 521
BmrFI	CCNGG	4 cut(s)	381, 425, 585, 846
BmsI	GCATC	2 cut(s)	75, 75
BpiI	GAAGAC	1 cut(s)	318
BpmI	CTGGAG	2 cut(s)	684, 723
BpuEI	CTTGAG	1 cut(s)	303
BsaJI	CCNNGG	4 cut(s)	216, 380, 423, 584
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 154, 184
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 381
Bse1I	ACTGG	2 cut(s)	131, 706
Bse3DI	GCAATG	1 cut(s)	224
BseBI	CCWGG	4 cut(s)	381, 425, 585, 846
BseDI	CCNNGG	4 cut(s)	216, 380, 423, 584
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	2 cut(s)	380, 381
BseMI	GCAATG	1 cut(s)	224
BseNI	ACTGG	2 cut(s)	131, 706
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	4 cut(s)	75, 78, 194, 706
BshFI	GGCC	3 cut(s)	305, 522, 539
BsiHKCI	CYCGRG	1 cut(s)	116
BslI	CCNNNNNNNGG	2 cut(s)	380, 381
BsmAI	GTCTC	2 cut(s)	109, 807
BsmBI	CGTCTC	1 cut(s)	109
BsnI	GGCC	3 cut(s)	305, 522, 539
BsoBI	CYCGRG	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	322, 678, 688
BspACI	CCGC	3 cut(s)	47, 74, 306
BspANI	GGCC	3 cut(s)	305, 522, 539
BspMI	ACCTGC	1 cut(s)	482
BspPI	GGATC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	131, 706
BssECI	CCNNGG	4 cut(s)	216, 380, 423, 584
BssMI	GATC	3 cut(s)	322, 678, 688
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	4 cut(s)	381, 425, 585, 846
Bst4CI	ACNGT	2 cut(s)	103, 268
Bst6I	CTCTTC	1 cut(s)	597
BstF5I	GGATG	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	3 cut(s)	325, 681, 691
BstMAI	GTCTC	2 cut(s)	109, 807
BstMBI	GATC	3 cut(s)	322, 678, 688
BstMWI	GCNNNNNNNGC	5 cut(s)	314, 341, 545, 659, 848
BstNI	CCWGG	4 cut(s)	381, 425, 585, 846
BstNSI	RCATGY	1 cut(s)	647
BstSCI	CCNGG	4 cut(s)	379, 423, 583, 844
BstSFI	CTRYAG	1 cut(s)	654
BstV1I	GCAGC	4 cut(s)	75, 78, 194, 706
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuI	GTATCC	2 cut(s)	412, 430
BsuRI	GGCC	3 cut(s)	305, 522, 539
BtsCI	GGATG	1 cut(s)	143
BtsI	GCAGTG	1 cut(s)	779
BtsIMutI	CAGTG	1 cut(s)	779
BveI	ACCTGC	1 cut(s)	482
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	2 cut(s)	76, 521
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	3 cut(s)	463, 557, 607
CviAII	CATG	2 cut(s)	644, 852
CviQI	GTAC	3 cut(s)	463, 557, 607
DpnI	GATC	3 cut(s)	324, 680, 690
DpnII	GATC	3 cut(s)	322, 678, 688
DraI	TTTAAA	1 cut(s)	196
EaeI	YGGCCR	2 cut(s)	303, 537
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	621
Eco88I	CYCGRG	1 cut(s)	116
EcoRII	CCWGG	4 cut(s)	379, 423, 583, 844
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	2 cut(s)	647, 855
FaiI	YATR	6 cut(s)	362, 389, 563, 621, 645, 853
FatI	CATG	2 cut(s)	643, 851
FbaI	TGATCA	1 cut(s)	678
Fnu4HI	GCNGC	5 cut(s)	89, 92, 183, 306, 720
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	5 cut(s)	89, 92, 183, 306, 720
FspBI	CTAG	2 cut(s)	332, 504
FspI	TGCGCA	1 cut(s)	95
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	5 cut(s)	89, 92, 183, 306, 720
GsuI	CTGGAG	2 cut(s)	684, 723
HaeIII	GGCC	3 cut(s)	305, 522, 539
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	647, 855
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	2 cut(s)	60, 132
HindII	GTYRAC	2 cut(s)	60, 132
HinfI	GANTC	2 cut(s)	281, 357
HphI	GGTGA	2 cut(s)	145, 760
Hpy166II	GTNNAC	2 cut(s)	60, 132
Hpy188I	TCNGA	2 cut(s)	356, 601
Hpy188III	TCNNGA	6 cut(s)	7, 287, 296, 320, 416, 800
Hpy8I	GTNNAC	2 cut(s)	60, 132
HpyAV	CCTTC	3 cut(s)	157, 583, 745
HpyCH4III	ACNGT	2 cut(s)	103, 268
HpyCH4IV	ACGT	2 cut(s)	670, 739
HpyF10VI	GCNNNNNNNGC	5 cut(s)	314, 341, 545, 659, 848
HpySE526I	ACGT	2 cut(s)	670, 739
Hsp92II	CATG	2 cut(s)	647, 855
HspAI	GCGC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	678
Kzo9I	GATC	3 cut(s)	322, 678, 688
LmnI	GCTCC	2 cut(s)	650, 848
Lsp1109I	GCAGC	4 cut(s)	75, 78, 194, 706
LweI	GCATC	2 cut(s)	75, 75
MaeI	CTAG	2 cut(s)	332, 504
MaeII	ACGT	2 cut(s)	670, 739
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	3 cut(s)	324, 680, 690
MboI	GATC	3 cut(s)	322, 678, 688
MboII	GAAGA	3 cut(s)	104, 323, 614
MflI	RGATCY	1 cut(s)	322
MlsI	TGGCCA	1 cut(s)	539
MluCI	AATT	6 cut(s)	108, 232, 290, 339, 551, 774
MluNI	TGGCCA	1 cut(s)	539
MlyI	GAGTC	2 cut(s)	275, 366
Mox20I	TGGCCA	1 cut(s)	539
Mph1103I	ATGCAT	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	539
MseI	TTAA	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	539
MspR9I	CCNGG	4 cut(s)	381, 425, 585, 846
MvaI	CCWGG	4 cut(s)	381, 425, 585, 846
MwoI	GCNNNNNNNGC	5 cut(s)	314, 341, 545, 659, 848
NdeII	GATC	3 cut(s)	322, 678, 688
NlaIII	CATG	2 cut(s)	647, 855
NmuCI	GTSAC	1 cut(s)	278
NsbI	TGCGCA	1 cut(s)	95
NsiI	ATGCAT	1 cut(s)	645
NspI	RCATGY	1 cut(s)	647
PkrI	GCNGC	5 cut(s)	90, 93, 184, 307, 721
PleI	GAGTC	2 cut(s)	275, 365
PpsI	GAGTC	2 cut(s)	275, 365
Psp6I	CCWGG	4 cut(s)	379, 423, 583, 844
PspGI	CCWGG	4 cut(s)	379, 423, 583, 844
PspPI	GGNCC	2 cut(s)	76, 521
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	3 cut(s)	464, 558, 608
RsaNI	GTAC	3 cut(s)	463, 557, 607
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	5 cut(s)	89, 92, 183, 306, 720
Sau3AI	GATC	3 cut(s)	322, 678, 688
Sau96I	GGNCC	2 cut(s)	76, 521
ScaI	AGTACT	1 cut(s)	608
SchI	GAGTC	2 cut(s)	275, 366
ScrFI	CCNGG	4 cut(s)	381, 425, 585, 846
SfaNI	GCATC	2 cut(s)	75, 75
SfcI	CTRYAG	1 cut(s)	654
SinI	GGWCC	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	6 cut(s)	108, 232, 290, 339, 551, 774
SsiI	CCGC	3 cut(s)	47, 74, 306
SspMI	CTAG	2 cut(s)	332, 504
StyD4I	CCNGG	4 cut(s)	379, 423, 583, 844
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	103, 268
TaiI	ACGT	2 cut(s)	673, 742
TaqI	TCGA	1 cut(s)	799
TasI	AATT	6 cut(s)	108, 232, 290, 339, 551, 774
TatI	WGTACW	1 cut(s)	606
TauI	GCSGC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	786
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	4 cut(s)	88, 91, 182, 719
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	139
TspGWI	ACGGA	2 cut(s)	180, 810
TspRI	CASTG	1 cut(s)	786
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	2 cut(s)	290, 551
XceI	RCATGY	1 cut(s)	647
XspI	CTAG	2 cut(s)	332, 504
ZrmI	AGTACT	1 cut(s)	608
Zsp2I	ATGCAT	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.