Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007062

Physical Location & Seq

Genomic Coordinates Forward (+)

66341064 .. 66344358

Gene Structure 3295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG499200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCCGCCGAAGACTCTCAAGATCCTCGCCTAGCGAAAATTGCCTCAGCAATCAGAGTCATACCCGACTTTCCCAAGCCAGGGATTATGTTCCAAGATATTACTACCTTACTTCTGGATACCCAGGCTTTCAAGGATACCATTGATTTGTTTGTTGAGAGGTACAAAGACAAAGAAATCTCTGTTGTTGCAGGTGTTGAAGCTAGAGGTTTTATTTTTGGCCCTCCTATTGCATTGGCCATTGGGGCTAAATTTGTACCTATGAGAAAGCCGAATAAGTTGCCTGGGAAGGTTATTTCTGAAGAGTACTCTTTGGAGTATGGAACAGACACGATGGAAATGCATGTGGGAGCTGTAGAAGCAGGAGAACGTGCCTTGATCATTGATGATCTCATTGCAACTGGAGGAACTTTGGGTGCTGCAATCAGGCTACTTGAACGTGTTGGGGTGAAGGTGGTTGAGTGTGCCTGTGTAATTGCACTGCCAGAGCTAAAGGGTCGGGAACGATTGGGAGACAATCCGTTATTTGTTCTTGTCAATGCACCTGGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009308 GO:0009507 GO:0009536 GO:0009690 GO:0009987 GO:0010817 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032261 GO:0034641 GO:0034654 GO:0034754 GO:0042445 GO:0043094 GO:0043101 GO:0043173 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044209 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046390 GO:0046483 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

184

Amino Acids

19.82

Weight (kDa)

5.03

Isoelectric Point (pI)

19.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	42 - 168	5.1e-18	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27450 AT1G27450 AT1G27450 AT1G27450
fragaria_vesca	FvH4_2g33240 FvH4_2g33240 FvH4_2g33240
malus_domestica	MD08G1086300.v1.1 MD08G1086400.v1.1 MD15G1071300.v1.1
prunus_persica	Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1
pyrus_communis	pycom08g07090 pycom15g06710
rosa_chinensis	RchiOBHm_Chr6g0309401
rosa_laevigata	RLG00000010569
rosa_multiflora	Rmu_sc0012466.1_g000005 Rmu_sc0017306.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159430
rosa_rugosa	Rorug06G0371900
rosa_samantha	Rh6BG494200 Rh6CG499200 Rh6DG485400
rosa_wichuraiana	Rw6G042240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	182
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	2 cut(s)	3, 237
AcsI	RAATTY	1 cut(s)	251
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	3 cut(s)	164, 258, 308
AfiI	CCNNNNNNNGG	2 cut(s)	80, 81
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	3 cut(s)	133, 200, 437
AjnI	CCWGG	4 cut(s)	79, 123, 283, 544
AluBI	AGCT	3 cut(s)	203, 353, 490
AluI	AGCT	3 cut(s)	203, 353, 490
Alw26I	GTCTC	1 cut(s)	507
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	3 cut(s)	3, 220, 237
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	460
BalI	TGGCCA	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	18
BbvCI	CCTCAGC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	1 cut(s)	328
BcgI	CGANNNNNNTGC	4 cut(s)	262, 296, 322, 356
BciT130I	CCWGG	4 cut(s)	81, 125, 285, 546
BciVI	GTATCC	2 cut(s)	112, 130
BclI	TGATCA	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	2 cut(s)	32, 204
BfmI	CTRYAG	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	182
BfuI	GTATCC	2 cut(s)	112, 130
BglI	GCCNNNNNGGC	1 cut(s)	245
BisI	GCNGC	2 cut(s)	6, 420
BlsI	GCNGC	2 cut(s)	7, 421
BmcAI	AGTACT	1 cut(s)	308
Bme1390I	CCNGG	4 cut(s)	81, 125, 285, 546
BmgT120I	GGNCC	1 cut(s)	221
BmrFI	CCNGG	4 cut(s)	81, 125, 285, 546
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	80, 123, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 81
Bse1I	ACTGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	4 cut(s)	81, 125, 285, 546
BseDI	CCNNGG	3 cut(s)	80, 123, 284
BseLI	CCNNNNNNNGG	2 cut(s)	80, 81
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	406
BseXI	GCAGC	1 cut(s)	406
BshFI	GGCC	3 cut(s)	5, 222, 239
BslI	CCNNNNNNNGG	2 cut(s)	80, 81
BsmAI	GTCTC	1 cut(s)	507
BsnI	GGCC	3 cut(s)	5, 222, 239
Bsp143I	GATC	3 cut(s)	22, 378, 388
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	3 cut(s)	5, 222, 239
BspCNI	CTCAG	1 cut(s)	59
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	3 cut(s)	80, 123, 284
BssMI	GATC	3 cut(s)	22, 378, 388
Bst2UI	CCWGG	4 cut(s)	81, 125, 285, 546
Bst6I	CTCTTC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	46
BstKTI	GATC	3 cut(s)	25, 381, 391
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	3 cut(s)	22, 378, 388
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 245, 359, 548
BstNI	CCWGG	4 cut(s)	81, 125, 285, 546
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	4 cut(s)	79, 123, 283, 544
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	406
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuI	GTATCC	2 cut(s)	112, 130
BsuRI	GGCC	3 cut(s)	5, 222, 239
BtsI	GCAGTG	1 cut(s)	479
BtsIMutI	CAGTG	1 cut(s)	479
BveI	ACCTGC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	221
Csp6I	GTAC	3 cut(s)	163, 257, 307
CviAII	CATG	2 cut(s)	344, 552
CviQI	GTAC	3 cut(s)	163, 257, 307
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	3 cut(s)	24, 380, 390
DpnII	GATC	3 cut(s)	22, 378, 388
EaeI	YGGCCR	2 cut(s)	3, 237
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	321
EcoRII	CCWGG	4 cut(s)	79, 123, 283, 544
EcoT22I	ATGCAT	1 cut(s)	345
FaeI	CATG	2 cut(s)	347, 555
FaiI	YATR	6 cut(s)	62, 89, 263, 321, 345, 553
FatI	CATG	2 cut(s)	343, 551
FbaI	TGATCA	1 cut(s)	378
Fnu4HI	GCNGC	2 cut(s)	6, 420
Fsp4HI	GCNGC	2 cut(s)	6, 420
FspBI	CTAG	2 cut(s)	32, 204
GluI	GCNGC	2 cut(s)	6, 420
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	3 cut(s)	5, 222, 239
Hin1II	CATG	2 cut(s)	347, 555
HinfI	GANTC	2 cut(s)	14, 57
HphI	GGTGA	1 cut(s)	460
Hpy188I	TCNGA	2 cut(s)	56, 301
Hpy188III	TCNNGA	3 cut(s)	20, 116, 500
HpyAV	CCTTC	2 cut(s)	283, 445
HpyCH4IV	ACGT	2 cut(s)	370, 439
HpyCH4V	TGCA	7 cut(s)	191, 233, 343, 398, 422, 479, 542
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 245, 359, 548
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	2 cut(s)	370, 439
Hsp92II	CATG	2 cut(s)	347, 555
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	3 cut(s)	22, 378, 388
LmnI	GCTCC	2 cut(s)	350, 548
Lsp1109I	GCAGC	1 cut(s)	406
MaeI	CTAG	2 cut(s)	32, 204
MaeII	ACGT	2 cut(s)	370, 439
MalI	GATC	3 cut(s)	24, 380, 390
MboI	GATC	3 cut(s)	22, 378, 388
MboII	GAAGA	2 cut(s)	23, 314
MflI	RGATCY	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	3 cut(s)	39, 251, 474
MluNI	TGGCCA	1 cut(s)	239
MlyI	GAGTC	2 cut(s)	8, 66
MnlI	CCTC	6 cut(s)	36, 55, 153, 200, 234, 398
Mox20I	TGGCCA	1 cut(s)	239
Mph1103I	ATGCAT	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	239
Msp20I	TGGCCA	1 cut(s)	239
MspR9I	CCNGG	4 cut(s)	81, 125, 285, 546
MvaI	CCWGG	4 cut(s)	81, 125, 285, 546
MwoI	GCNNNNNNNGC	4 cut(s)	41, 245, 359, 548
NdeII	GATC	3 cut(s)	22, 378, 388
NlaIII	CATG	2 cut(s)	347, 555
NsiI	ATGCAT	1 cut(s)	345
NspI	RCATGY	1 cut(s)	347
PaqCI	CACCTGC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	7, 421
PleI	GAGTC	2 cut(s)	8, 65
PpsI	GAGTC	2 cut(s)	8, 65
Psp6I	CCWGG	4 cut(s)	79, 123, 283, 544
PspGI	CCWGG	4 cut(s)	79, 123, 283, 544
PspPI	GGNCC	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	3 cut(s)	164, 258, 308
RsaNI	GTAC	3 cut(s)	163, 257, 307
SatI	GCNGC	2 cut(s)	6, 420
Sau3AI	GATC	3 cut(s)	22, 378, 388
Sau96I	GGNCC	1 cut(s)	221
ScaI	AGTACT	1 cut(s)	308
SchI	GAGTC	2 cut(s)	8, 66
ScrFI	CCNGG	4 cut(s)	81, 125, 285, 546
SfcI	CTRYAG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
Sse9I	AATT	3 cut(s)	39, 251, 474
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	2 cut(s)	32, 204
StyD4I	CCNGG	4 cut(s)	79, 123, 283, 544
TaiI	ACGT	2 cut(s)	373, 442
TasI	AATT	3 cut(s)	39, 251, 474
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	486
TseI	GCWGC	1 cut(s)	419
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	1 cut(s)	486
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	1 cut(s)	347
XspI	CTAG	2 cut(s)	32, 204
ZrmI	AGTACT	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.