Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007062

Physical Location & Seq

Genomic Coordinates Forward (+)

69598400 .. 69602601

Gene Structure 4202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG494200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGATGCTGCTGCGCACCACCGTCTCAATTCTTCTCTGGTCATCCTCGCCATCCTTCATCACCTCTCCCACTCTCGCAGCAACTCCGTTTAAAACCAAATCTCATTCTCCCTTAGTTGCATTTCCAAATTACCGATCCACCTTTGCTTCTCCTCGCTGCACCGTGAGTGATAGTGACTCTGTGAAATTTCAAGAGATGGCCGCCGAAGACGCTCAAGATCCTCGCCTAGCGAAAATTGCCTCAGCAATCAGAGTCATACCCGACTTTCCCAAGCCAGGGATTATGTTCCAAGATATTACTACCTTACTTCTGGATACCCAGGCTTTCAAGGATACCATTGATTTGTTTGTTGAGAGGTACAAAGACAAAGAAATCTCTGTTGTTGCAGGTATTGAAGCTCGAGGTTTTATTTTTGGCCCTCCTATTGCATTGGCCATTGGGGCTAAATTTGTACCTATGAGAAAGCCGAATAAGTTGCCTGGGAAGGTTATTTCTGAAGAGTATTCTTTGGAGTATGGAACTGACACGATGGAAATGCATGTGGGAGCTGTAGAAGCAGGAGAACGTGCCTTGATCATTGATGATCTCATTGCAACTGGAGGAACTTTGGGTGCTGCAATCAGGCTACTTGAACGTGTTGGGGTGAAGGTGGTTGAGTGTGCCTGTGTAATTGCACTGCCAGAACTAAAGGGTCGGGAACGATTGGGAGACAATCCGTTATTTGTTCTTGTCAATGCACCTGGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009308 GO:0009507 GO:0009536 GO:0009690 GO:0009987 GO:0010817 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032261 GO:0034641 GO:0034654 GO:0034754 GO:0042445 GO:0043094 GO:0043101 GO:0043173 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044209 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046390 GO:0046483 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

249

Amino Acids

26.97

Weight (kDa)

5.81

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	107 - 233	7.6e-18	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27450 AT1G27450 AT1G27450 AT1G27450
fragaria_vesca	FvH4_2g33240 FvH4_2g33240 FvH4_2g33240
malus_domestica	MD08G1086300.v1.1 MD08G1086400.v1.1 MD15G1071300.v1.1
prunus_persica	Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1
pyrus_communis	pycom08g07090 pycom15g06710
rosa_chinensis	RchiOBHm_Chr6g0309401
rosa_laevigata	RLG00000010569
rosa_multiflora	Rmu_sc0012466.1_g000005 Rmu_sc0017306.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159430
rosa_rugosa	Rorug06G0371900
rosa_samantha	Rh6BG494200 Rh6CG499200 Rh6DG485400
rosa_wichuraiana	Rw6G042240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	377
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	2 cut(s)	129, 212
AcoI	YGGCCR	2 cut(s)	198, 432
AcsI	RAATTY	2 cut(s)	185, 446
AcuI	CTGAAG	1 cut(s)	516
AfaI	GTAC	2 cut(s)	359, 453
AfiI	CCNNNNNNNGG	2 cut(s)	275, 276
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	4 cut(s)	191, 328, 395, 632
AjnI	CCWGG	4 cut(s)	274, 318, 478, 739
AluBI	AGCT	2 cut(s)	398, 548
AluI	AGCT	2 cut(s)	398, 548
Alw26I	GTCTC	2 cut(s)	28, 702
AlwI	GGATC	2 cut(s)	129, 212
Ama87I	CYCGRG	1 cut(s)	399
AoxI	GGCC	3 cut(s)	198, 415, 432
ApeKI	GCWGC	5 cut(s)	7, 10, 77, 156, 614
ApoI	RAATTY	2 cut(s)	185, 446
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	416
AsuHPI	GGTGA	2 cut(s)	52, 655
AvaI	CYCGRG	1 cut(s)	399
BalI	TGGCCA	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	89, 143, 601
BccI	CCATC	3 cut(s)	58, 190, 523
BcgI	CGANNNNNNTGC	4 cut(s)	457, 491, 517, 551
BciT130I	CCWGG	4 cut(s)	276, 320, 480, 741
BciVI	GTATCC	2 cut(s)	307, 325
BclI	TGATCA	1 cut(s)	573
BcoDI	GTCTC	2 cut(s)	28, 702
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	549
BfuAI	ACCTGC	1 cut(s)	377
BfuI	GTATCC	2 cut(s)	307, 325
BglI	GCCNNNNNGGC	1 cut(s)	440
BisI	GCNGC	6 cut(s)	8, 11, 78, 157, 201, 615
BlsI	GCNGC	6 cut(s)	9, 12, 79, 158, 202, 616
Bme1390I	CCNGG	4 cut(s)	276, 320, 480, 741
BmeT110I	CYCGRG	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	416
BmrFI	CCNGG	4 cut(s)	276, 320, 480, 741
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	618
Bpu10I	CCTNAGC	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	198
BsaJI	CCNNGG	3 cut(s)	275, 318, 479
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 276
Bse1I	ACTGG	1 cut(s)	601
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	4 cut(s)	276, 320, 480, 741
BseDI	CCNNGG	3 cut(s)	275, 318, 479
BseGI	GGATG	2 cut(s)	41, 50
BseLI	CCNNNNNNNGG	2 cut(s)	275, 276
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	601
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	3 cut(s)	89, 143, 601
BsgI	GTGCAG	1 cut(s)	142
BshFI	GGCC	3 cut(s)	200, 417, 434
BsiHKCI	CYCGRG	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	275, 276
BsmAI	GTCTC	2 cut(s)	28, 702
BsmBI	CGTCTC	1 cut(s)	28
BsnI	GGCC	3 cut(s)	200, 417, 434
BsoBI	CYCGRG	1 cut(s)	399
Bsp143I	GATC	4 cut(s)	134, 217, 573, 583
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	3 cut(s)	200, 417, 434
BspCNI	CTCAG	1 cut(s)	254
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	2 cut(s)	129, 212
BsrDI	GCAATG	1 cut(s)	588
BsrI	ACTGG	1 cut(s)	601
BssECI	CCNNGG	3 cut(s)	275, 318, 479
BssMI	GATC	4 cut(s)	134, 217, 573, 583
Bst2UI	CCWGG	4 cut(s)	276, 320, 480, 741
Bst4CI	ACNGT	2 cut(s)	22, 163
Bst6I	CTCTTC	1 cut(s)	492
BstDEI	CTNAG	2 cut(s)	112, 241
BstF5I	GGATG	2 cut(s)	41, 50
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	4 cut(s)	137, 220, 576, 586
BstMAI	GTCTC	2 cut(s)	28, 702
BstMBI	GATC	4 cut(s)	134, 217, 573, 583
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 236, 440, 554, 743
BstNI	CCWGG	4 cut(s)	276, 320, 480, 741
BstNSI	RCATGY	1 cut(s)	542
BstSCI	CCNGG	4 cut(s)	274, 318, 478, 739
BstSFI	CTRYAG	1 cut(s)	549
BstV1I	GCAGC	3 cut(s)	89, 143, 601
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuI	GTATCC	2 cut(s)	307, 325
BsuRI	GGCC	3 cut(s)	200, 417, 434
BtsCI	GGATG	2 cut(s)	41, 50
BtsI	GCAGTG	1 cut(s)	674
BtsIMutI	CAGTG	1 cut(s)	674
BveI	ACCTGC	1 cut(s)	377
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	416
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	358, 452
CviAII	CATG	2 cut(s)	539, 747
CviQI	GTAC	2 cut(s)	358, 452
DdeI	CTNAG	2 cut(s)	112, 241
DpnI	GATC	4 cut(s)	136, 219, 575, 585
DpnII	GATC	4 cut(s)	134, 217, 573, 583
DraI	TTTAAA	1 cut(s)	91
EaeI	YGGCCR	2 cut(s)	198, 432
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Eco57I	CTGAAG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	399
EcoRII	CCWGG	4 cut(s)	274, 318, 478, 739
EcoT22I	ATGCAT	1 cut(s)	540
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	2 cut(s)	542, 750
FaiI	YATR	6 cut(s)	257, 284, 458, 516, 540, 748
FatI	CATG	2 cut(s)	538, 746
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	6 cut(s)	8, 11, 78, 157, 201, 615
FokI	GGATG	2 cut(s)	28, 37
Fsp4HI	GCNGC	6 cut(s)	8, 11, 78, 157, 201, 615
FspBI	CTAG	1 cut(s)	227
FspI	TGCGCA	1 cut(s)	14
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	6 cut(s)	8, 11, 78, 157, 201, 615
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	3 cut(s)	200, 417, 434
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	542, 750
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	176, 252
HphI	GGTGA	2 cut(s)	52, 655
Hpy188I	TCNGA	2 cut(s)	251, 496
Hpy188III	TCNNGA	4 cut(s)	191, 215, 311, 695
HpyAV	CCTTC	3 cut(s)	64, 478, 640
HpyCH4III	ACNGT	2 cut(s)	22, 163
HpyCH4IV	ACGT	2 cut(s)	565, 634
HpyCH4V	TGCA	9 cut(s)	119, 159, 386, 428, 538, 593, 617, 674, 737
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 236, 440, 554, 743
HpyF3I	CTNAG	2 cut(s)	112, 241
HpySE526I	ACGT	2 cut(s)	565, 634
Hsp92II	CATG	2 cut(s)	542, 750
HspAI	GCGC	1 cut(s)	13
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	4 cut(s)	134, 217, 573, 583
LmnI	GCTCC	2 cut(s)	545, 743
Lsp1109I	GCAGC	3 cut(s)	89, 143, 601
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	2 cut(s)	565, 634
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	4 cut(s)	136, 219, 575, 585
MboI	GATC	4 cut(s)	134, 217, 573, 583
MboII	GAAGA	3 cut(s)	23, 218, 509
MflI	RGATCY	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	6 cut(s)	27, 127, 185, 234, 446, 669
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	2 cut(s)	170, 261
MnlI	CCTC	9 cut(s)	55, 73, 162, 231, 250, 348, 395, 429, 593
Mox20I	TGGCCA	1 cut(s)	434
Mph1103I	ATGCAT	1 cut(s)	540
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	434
MspR9I	CCNGG	4 cut(s)	276, 320, 480, 741
MvaI	CCWGG	4 cut(s)	276, 320, 480, 741
MwoI	GCNNNNNNNGC	5 cut(s)	209, 236, 440, 554, 743
NdeII	GATC	4 cut(s)	134, 217, 573, 583
NlaIII	CATG	2 cut(s)	542, 750
NmuCI	GTSAC	1 cut(s)	173
NsbI	TGCGCA	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	540
NspI	RCATGY	1 cut(s)	542
PaeR7I	CTCGAG	1 cut(s)	399
PkrI	GCNGC	6 cut(s)	9, 12, 79, 158, 202, 616
PleI	GAGTC	2 cut(s)	170, 260
PpsI	GAGTC	2 cut(s)	170, 260
Psp6I	CCWGG	4 cut(s)	274, 318, 478, 739
PspGI	CCWGG	4 cut(s)	274, 318, 478, 739
PspPI	GGNCC	1 cut(s)	416
PspXI	VCTCGAGB	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	2 cut(s)	359, 453
RsaNI	GTAC	2 cut(s)	358, 452
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	6 cut(s)	8, 11, 78, 157, 201, 615
Sau3AI	GATC	4 cut(s)	134, 217, 573, 583
Sau96I	GGNCC	1 cut(s)	416
SchI	GAGTC	2 cut(s)	170, 261
ScrFI	CCNGG	4 cut(s)	276, 320, 480, 741
SfcI	CTRYAG	1 cut(s)	549
Sfr274I	CTCGAG	1 cut(s)	399
SlaI	CTCGAG	1 cut(s)	399
SmlI	CTYRAG	2 cut(s)	213, 399
SmoI	CTYRAG	2 cut(s)	213, 399
Sse9I	AATT	6 cut(s)	27, 127, 185, 234, 446, 669
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	4 cut(s)	274, 318, 478, 739
TaaI	ACNGT	2 cut(s)	22, 163
TaiI	ACGT	2 cut(s)	568, 637
TaqI	TCGA	1 cut(s)	400
TasI	AATT	6 cut(s)	27, 127, 185, 234, 446, 669
TauI	GCSGC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	681
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	5 cut(s)	7, 10, 77, 156, 614
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	46
TspGWI	ACGGA	2 cut(s)	75, 705
TspRI	CASTG	1 cut(s)	681
XapI	RAATTY	2 cut(s)	185, 446
XceI	RCATGY	1 cut(s)	542
XhoI	CTCGAG	1 cut(s)	399
XspI	CTAG	1 cut(s)	227
Zsp2I	ATGCAT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.