Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007062

Physical Location & Seq

Genomic Coordinates Reverse (-)

36571986 .. 36575206

Gene Structure 3221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G424200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGATCCCACAAAACACCTCTTTTCTTTTCTCCTCAAATTCCTTCGCTTTCTCACCTGCCGTCAGCTCTCGCAGTCTCGCAGCTCCGTTTAACAGGTCCCCTTCCTCTGCCGCGCTGTCCTTCATTCGCTTCCCAAATTACCGATCTGCCCTCCCTCCCCCGCGCTCCTCCGTGAGTAAGAGTAAATCAGTGCAAGTTCGAGCAATGGCTGCGGAAGATGGTAAGGACCCTCGTCTTGCTAGAATTTCATCTGCTATCAGAGTCATACCGGACTTCCCCAAGCCAGGGATCTTGTTCCAAGATATAACCACTTTGCTTCTCGATACCAAGGCTTTCAAGGATACCATTGATTTGTTTGTTGAGAGGTACAAAGACAAAGAAATCTCTGTTGTTGCAGGTATTGAAGCTAGAGGCTTTATATTTGGCCCTCCTATTGCATTGGCCATTGGGGCAAAATTTGTGCCTATGAGAAAACCAAATAAGTTGCCCGGGAAGGTTATTTCTGAAGAGTACTCTTTGGAGTATGGAACAGATATAATGGAGATGCACGTGGGAGCTGTAGAAGCGGGAGAGCGTGCCCTGATCATAGATGACCTCATTGCAACAGGGGGAACCTTGGGTGCTGCACTCAGGCTTCTTGAGCGTGTTGGAGTGCATGTGGTTGAGTGTGCCTGTGTGATTGAATTGCCAGGGCTAAAGGGACGGGAGCGATTGGGGGACAAACCATTATTTGTTCTAGTTAATGGAGACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009308 GO:0009507 GO:0009536 GO:0009690 GO:0009987 GO:0010817 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032261 GO:0034641 GO:0034654 GO:0034754 GO:0042445 GO:0043094 GO:0043101 GO:0043173 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044209 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046390 GO:0046483 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

252

Amino Acids

27.12

Weight (kDa)

9.07

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27450 AT1G27450 AT1G27450 AT1G27450
fragaria_vesca	FvH4_2g33240 FvH4_2g33240 FvH4_2g33240
malus_domestica	MD08G1086300.v1.1 MD08G1086400.v1.1 MD15G1071300.v1.1
prunus_persica	Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1
pyrus_communis	pycom08g07090 pycom15g06710
rosa_chinensis	RchiOBHm_Chr6g0309401
rosa_laevigata	RLG00000010569
rosa_multiflora	Rmu_sc0012466.1_g000005 Rmu_sc0017306.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159430
rosa_rugosa	Rorug06G0371900
rosa_samantha	Rh6BG494200 Rh6CG499200 Rh6DG485400
rosa_wichuraiana	Rw6G042240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	64
Acc36I	ACCTGC	2 cut(s)	64, 386
AccII	CGCG	2 cut(s)	113, 163
AciI	CCGC	4 cut(s)	111, 161, 212, 566
AclWI	GGATC	1 cut(s)	296
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	3 cut(s)	37, 243, 455
AcuI	CTGAAG	1 cut(s)	525
AcvI	CACGTG	1 cut(s)	550
AfaI	GTAC	2 cut(s)	368, 512
AfiI	CCNNNNNNNGG	2 cut(s)	284, 285
AgsI	TTSAA	3 cut(s)	337, 404, 683
AjnI	CCWGG	2 cut(s)	283, 688
AluBI	AGCT	4 cut(s)	66, 83, 407, 557
AluI	AGCT	4 cut(s)	66, 83, 407, 557
Alw26I	GTCTC	2 cut(s)	80, 741
AlwI	GGATC	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	2 cut(s)	424, 441
ApeKI	GCWGC	3 cut(s)	80, 209, 623
ApoI	RAATTY	3 cut(s)	37, 243, 455
AspLEI	GCGC	2 cut(s)	115, 165
AspS9I	GGNCC	3 cut(s)	96, 226, 425
AsuC2I	CCSGG	2 cut(s)	489, 490
AsuHPI	GGTGA	1 cut(s)	45
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	2 cut(s)	96, 226
BaeGI	GKGCMC	1 cut(s)	580
BalI	TGGCCA	1 cut(s)	443
BbrPI	CACGTG	1 cut(s)	550
BbvI	GCAGC	3 cut(s)	92, 196, 610
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	2 cut(s)	285, 690
BciVI	GTATCC	1 cut(s)	334
BclI	TGATCA	1 cut(s)	582
BcnI	CCSGG	2 cut(s)	489, 490
BcoDI	GTCTC	2 cut(s)	80, 741
BfaI	CTAG	3 cut(s)	240, 408, 737
BfmI	CTRYAG	1 cut(s)	558
BfuAI	ACCTGC	2 cut(s)	64, 386
BfuI	GTATCC	1 cut(s)	334
BglI	GCCNNNNNGGC	1 cut(s)	449
BisI	GCNGC	4 cut(s)	81, 111, 210, 624
BlsI	GCNGC	4 cut(s)	82, 112, 211, 625
BmcAI	AGTACT	1 cut(s)	512
Bme1390I	CCNGG	4 cut(s)	285, 489, 490, 690
Bme18I	GGWCC	2 cut(s)	96, 226
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	3 cut(s)	96, 226, 425
BmiI	GGNNCC	3 cut(s)	98, 228, 613
BmrFI	CCNGG	4 cut(s)	285, 489, 490, 690
BmsI	GCATC	1 cut(s)	534
BoxI	GACNNNNGTC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	2 cut(s)	489, 490
BsaAI	YACGTR	1 cut(s)	550
BsaJI	CCNNGG	5 cut(s)	284, 327, 488, 615, 689
BsaWI	WCCGGW	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 285
Bse3DI	GCAATG	2 cut(s)	210, 597
BseBI	CCWGG	2 cut(s)	285, 690
BseDI	CCNNGG	5 cut(s)	284, 327, 488, 615, 689
BseLI	CCNNNNNNNGG	2 cut(s)	284, 285
BseMI	GCAATG	2 cut(s)	210, 597
BseMII	CTCAG	1 cut(s)	643
BseRI	GAGGAG	2 cut(s)	22, 157
BseSI	GKGCMC	1 cut(s)	580
BseXI	GCAGC	3 cut(s)	92, 196, 610
BsgI	GTGCAG	1 cut(s)	609
Bsh1236I	CGCG	2 cut(s)	113, 163
BshFI	GGCC	2 cut(s)	426, 443
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	2 cut(s)	269, 489
BslFI	GGGAC	3 cut(s)	82, 714, 731
BslI	CCNNNNNNNGG	2 cut(s)	284, 285
BsmAI	GTCTC	2 cut(s)	80, 741
BsmBI	CGTCTC	1 cut(s)	741
BsmFI	GGGAC	3 cut(s)	82, 714, 731
BsnI	GGCC	2 cut(s)	426, 443
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp143I	GATC	4 cut(s)	3, 143, 288, 582
BspACI	CCGC	4 cut(s)	111, 161, 212, 566
BspANI	GGCC	2 cut(s)	426, 443
BspCNI	CTCAG	1 cut(s)	642
BspFNI	CGCG	2 cut(s)	113, 163
BspLI	GGNNCC	3 cut(s)	98, 228, 613
BspMI	ACCTGC	2 cut(s)	64, 386
BspPI	GGATC	1 cut(s)	296
BsrDI	GCAATG	2 cut(s)	210, 597
BssECI	CCNNGG	5 cut(s)	284, 327, 488, 615, 689
BssMI	GATC	4 cut(s)	3, 143, 288, 582
BssT1I	CCWWGG	2 cut(s)	327, 615
Bst2UI	CCWGG	2 cut(s)	285, 690
Bst6I	CTCTTC	1 cut(s)	501
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstBAI	YACGTR	1 cut(s)	550
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	1 cut(s)	629
BstFNI	CGCG	2 cut(s)	113, 163
BstHHI	GCGC	2 cut(s)	115, 165
BstKTI	GATC	4 cut(s)	6, 146, 291, 585
BstMAI	GTCTC	2 cut(s)	80, 741
BstMBI	GATC	4 cut(s)	3, 143, 288, 582
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 449, 563, 640
BstNI	CCWGG	2 cut(s)	285, 690
BstNSI	RCATGY	1 cut(s)	659
BstPAI	GACNNNNGTC	1 cut(s)	231
BstSCI	CCNGG	4 cut(s)	283, 487, 488, 688
BstSFI	CTRYAG	1 cut(s)	558
BstSLI	GKGCMC	1 cut(s)	580
BstUI	CGCG	2 cut(s)	113, 163
BstV1I	GCAGC	3 cut(s)	92, 196, 610
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	426, 443
BtsIMutI	CAGTG	1 cut(s)	195
BveI	ACCTGC	2 cut(s)	64, 386
Cac8I	GCNNGC	1 cut(s)	576
CfoI	GCGC	2 cut(s)	115, 165
Cfr13I	GGNCC	3 cut(s)	96, 226, 425
Cfr9I	CCCGGG	1 cut(s)	488
Csp6I	GTAC	2 cut(s)	367, 511
CviAII	CATG	2 cut(s)	656, 753
CviQI	GTAC	2 cut(s)	367, 511
DdeI	CTNAG	1 cut(s)	629
DpnI	GATC	4 cut(s)	5, 145, 290, 584
DpnII	GATC	4 cut(s)	3, 143, 288, 582
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco130I	CCWWGG	2 cut(s)	327, 615
Eco47I	GGWCC	2 cut(s)	96, 226
Eco57I	CTGAAG	1 cut(s)	525
Eco72I	CACGTG	1 cut(s)	550
Eco88I	CYCGRG	1 cut(s)	488
EcoO109I	RGGNCCY	2 cut(s)	96, 226
EcoRII	CCWGG	2 cut(s)	283, 688
EcoT14I	CCWWGG	2 cut(s)	327, 615
ErhI	CCWWGG	2 cut(s)	327, 615
Esp3I	CGTCTC	1 cut(s)	741
FaeI	CATG	2 cut(s)	659, 756
FaiI	YATR	9 cut(s)	266, 305, 419, 467, 525, 536, 587, 657, 754
FaqI	GGGAC	3 cut(s)	82, 714, 731
FatI	CATG	2 cut(s)	655, 752
FauI	CCCGC	2 cut(s)	168, 559
FbaI	TGATCA	1 cut(s)	582
Fnu4HI	GCNGC	4 cut(s)	81, 111, 210, 624
Fsp4HI	GCNGC	4 cut(s)	81, 111, 210, 624
FspBI	CTAG	3 cut(s)	240, 408, 737
GlaI	GCGC	2 cut(s)	114, 164
GluI	GCNGC	4 cut(s)	81, 111, 210, 624
HaeIII	GGCC	2 cut(s)	426, 443
HapII	CCGG	2 cut(s)	269, 489
HhaI	GCGC	2 cut(s)	115, 165
Hin1II	CATG	2 cut(s)	659, 756
Hin6I	GCGC	2 cut(s)	113, 163
HinP1I	GCGC	2 cut(s)	113, 163
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	2 cut(s)	269, 489
HphI	GGTGA	1 cut(s)	45
Hpy188I	TCNGA	2 cut(s)	260, 505
Hpy188III	TCNNGA	2 cut(s)	320, 638
HpyAV	CCTTC	4 cut(s)	52, 111, 130, 487
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	7 cut(s)	193, 395, 437, 547, 602, 626, 655
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 449, 563, 640
HpyF3I	CTNAG	1 cut(s)	629
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	2 cut(s)	659, 756
HspAI	GCGC	2 cut(s)	113, 163
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	4 cut(s)	3, 143, 288, 582
LmnI	GCTCC	4 cut(s)	88, 170, 554, 706
Lsp1109I	GCAGC	3 cut(s)	92, 196, 610
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	3 cut(s)	240, 408, 737
MaeII	ACGT	1 cut(s)	549
MalI	GATC	4 cut(s)	5, 145, 290, 584
MboI	GATC	4 cut(s)	3, 143, 288, 582
MboII	GAAGA	2 cut(s)	227, 518
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	580
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	5 cut(s)	37, 136, 243, 455, 683
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	628
Mox20I	TGGCCA	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	2 cut(s)	90, 741
Msp20I	TGGCCA	1 cut(s)	443
MspI	CCGG	2 cut(s)	269, 489
MspR9I	CCNGG	4 cut(s)	285, 489, 490, 690
MvaI	CCWGG	2 cut(s)	285, 690
MvnI	CGCG	2 cut(s)	113, 163
MwoI	GCNNNNNNNGC	4 cut(s)	209, 449, 563, 640
NciI	CCSGG	2 cut(s)	489, 490
NdeII	GATC	4 cut(s)	3, 143, 288, 582
NlaIII	CATG	2 cut(s)	659, 756
NlaIV	GGNNCC	3 cut(s)	98, 228, 613
NspI	RCATGY	1 cut(s)	659
PaqCI	CACCTGC	1 cut(s)	64
PkrI	GCNGC	4 cut(s)	82, 112, 211, 625
PleI	GAGTC	1 cut(s)	269
PmaCI	CACGTG	1 cut(s)	550
PmlI	CACGTG	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	269
Ppu21I	YACGTR	1 cut(s)	550
PpuMI	RGGWCCY	2 cut(s)	96, 226
PshAI	GACNNNNGTC	1 cut(s)	231
Psp5II	RGGWCCY	2 cut(s)	96, 226
Psp6I	CCWGG	2 cut(s)	283, 688
PspCI	CACGTG	1 cut(s)	550
PspGI	CCWGG	2 cut(s)	283, 688
PspN4I	GGNNCC	3 cut(s)	98, 228, 613
PspPI	GGNCC	3 cut(s)	96, 226, 425
PspPPI	RGGWCCY	2 cut(s)	96, 226
PsuI	RGATCY	1 cut(s)	288
RsaI	GTAC	2 cut(s)	368, 512
RsaNI	GTAC	2 cut(s)	367, 511
SaqAI	TTAA	2 cut(s)	90, 741
SatI	GCNGC	4 cut(s)	81, 111, 210, 624
Sau3AI	GATC	4 cut(s)	3, 143, 288, 582
Sau96I	GGNCC	3 cut(s)	96, 226, 425
ScaI	AGTACT	1 cut(s)	512
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	4 cut(s)	285, 489, 490, 690
SduI	GDGCHC	1 cut(s)	580
SfaNI	GCATC	1 cut(s)	534
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	2 cut(s)	96, 226
SmaI	CCCGGG	1 cut(s)	490
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	5 cut(s)	37, 136, 243, 455, 683
SsiI	CCGC	4 cut(s)	111, 161, 212, 566
SspMI	CTAG	3 cut(s)	240, 408, 737
StyD4I	CCNGG	4 cut(s)	283, 487, 488, 688
StyI	CCWWGG	2 cut(s)	327, 615
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	2 cut(s)	199, 321
TasI	AATT	5 cut(s)	37, 136, 243, 455, 683
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	90, 741
Tru9I	TTAA	2 cut(s)	90, 741
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	3 cut(s)	80, 209, 623
TspDTI	ATGAA	2 cut(s)	112, 237
TspGWI	ACGGA	2 cut(s)	75, 160
TspMI	CCCGGG	1 cut(s)	488
TspRI	CASTG	1 cut(s)	195
VpaK11BI	GGWCC	2 cut(s)	96, 226
XapI	RAATTY	3 cut(s)	37, 243, 455
XceI	RCATGY	1 cut(s)	659
XmaI	CCCGGG	1 cut(s)	488
XspI	CTAG	3 cut(s)	240, 408, 737
ZrmI	AGTACT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.