FvH4_2g33710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007489
Physical Location & Seq
Forward (+)
25200437 .. 25200775
339 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33710.t1

Sequence Viewer

Length: 339 bp
ATGGCCAAGAGTTTCAAGCCTCTTTGCTCCTTGTTTGTTCTGGTTCTTGTAATATGCTCTGATAGGGGAACAGAATCTCGTCCTCTGAAATTGAGCAATTCATGGAGCTCCTCATCCTCTATTAAGAGTAGTAGCTTGTTTGATACTGACGAGTTGTACATTCAAGCAATGAAGAGTGCTAGTGGAGGTCCGAGTCGAGGCGGAGTAGGTCACAGCTACACCACTTCTCAAACTCTCGGGGGGATTAAAAATGGAGGTCCAAGCTCAGGTGGAAAAGGTCATGCCTTCACCACTACTCAAACTCTTGGAGGGATCAAAAATGGAGGTCCAAGCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

11.43

Weight (kDa)

9.7

Isoelectric Point (pI)

31.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 201
AclWI GGATC 1 cut(s) 320
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 2 cut(s) 197, 266
AgsI TTSAA 2 cut(s) 16, 164
AluBI AGCT 5 cut(s) 108, 135, 216, 264, 333
AluI AGCT 5 cut(s) 108, 135, 216, 264, 333
Alw21I GWGCWC 1 cut(s) 110
AlwI GGATC 1 cut(s) 320
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 1 cut(s) 3
AspS9I GGNCC 3 cut(s) 188, 257, 326
AsuHPI GGTGA 1 cut(s) 280
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 3 cut(s) 188, 257, 326
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 110
BfaI CTAG 1 cut(s) 180
Bme18I GGWCC 3 cut(s) 188, 257, 326
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 3 cut(s) 188, 257, 326
Bpu10I CCTNAGC 1 cut(s) 265
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 266
Bse3DI GCAATG 1 cut(s) 174
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 2 cut(s) 197, 266
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 100
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 197, 266
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 110
Bsp1407I TGTACA 1 cut(s) 156
Bsp143I GATC 1 cut(s) 312
BspACI CCGC 1 cut(s) 201
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 278
BspPI GGATC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 174
BsrGI TGTACA 1 cut(s) 156
BssMI GATC 1 cut(s) 312
Bst6I CTCTTC 1 cut(s) 167
BstAUI TGTACA 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 265
BstF5I GGATG 1 cut(s) 113
BstKTI GATC 1 cut(s) 315
BstMBI GATC 1 cut(s) 312
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 113
Cfr13I GGNCC 3 cut(s) 188, 257, 326
Csp6I GTAC 1 cut(s) 157
CviAII CATG 2 cut(s) 102, 281
CviJI RGCY 7 cut(s) 5, 19, 108, 135, 216, 264, 333
CviKI_1 RGCY 7 cut(s) 5, 19, 108, 135, 216, 264, 333
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 1 cut(s) 265
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
EciI GGCGGA 1 cut(s) 216
Ecl136II GAGCTC 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 110
Eco47I GGWCC 3 cut(s) 188, 257, 326
Eco53kI GAGCTC 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 110
FaeI CATG 2 cut(s) 105, 284
FaiI YATR 4 cut(s) 55, 103, 282, 337
FatI CATG 2 cut(s) 101, 280
FokI GGATG 1 cut(s) 100
FriOI GRGCYC 1 cut(s) 110
FspBI CTAG 1 cut(s) 180
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 105, 284
HinfI GANTC 2 cut(s) 74, 193
HphI GGTGA 1 cut(s) 280
Hpy188I TCNGA 3 cut(s) 61, 87, 192
HpyAV CCTTC 1 cut(s) 295
HpyF3I CTNAG 1 cut(s) 265
Hsp92II CATG 2 cut(s) 105, 284
Kzo9I GATC 1 cut(s) 312
LmnI GCTCC 3 cut(s) 32, 105, 113
LpnPI CCDG 2 cut(s) 26, 252
MaeI CTAG 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 110
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 89, 97
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 9 cut(s) 30, 93, 121, 127, 179, 191, 248, 302, 317
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 123, 246
Msp20I TGGCCA 1 cut(s) 5
NdeII GATC 1 cut(s) 312
NlaIII CATG 2 cut(s) 105, 284
NmuCI GTSAC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 74
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
Psp124BI GAGCTC 1 cut(s) 110
PspPI GGNCC 3 cut(s) 188, 257, 326
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SacI GAGCTC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 123, 246
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 3 cut(s) 188, 257, 326
SchI GAGTC 1 cut(s) 202
SduI GDGCHC 1 cut(s) 110
SinI GGWCC 3 cut(s) 188, 257, 326
Sse9I AATT 2 cut(s) 89, 97
SsiI CCGC 1 cut(s) 201
SspMI CTAG 1 cut(s) 180
SstI GAGCTC 1 cut(s) 110
TaqI TCGA 1 cut(s) 196
TasI AATT 2 cut(s) 89, 97
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 2 cut(s) 123, 246
Tru9I TTAA 2 cut(s) 123, 246
TseFI GTSAC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 90, 185
VpaK11BI GGWCC 3 cut(s) 188, 257, 326
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.