Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007489

Physical Location & Seq

Genomic Coordinates Forward (+)

36843896 .. 36844366

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G429400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCCATCAAAAGCTTCAAGCCAGCTCTCTGCTCCATCCTTGTTCTTCTCACTGTGAGCTCTAGGGTTTTGGTCATATCAGAAGCCCGTCCTCTTAAGCTGGGGAGTTCATGGAGCTCCATAGACAAGGAGATGGAGAGTGTGTTTGATGGGCTGTTCATTGACGCAATGAAGAAAGAAGGCCCGAGCTCCGGAGGAAAGGGTCATGCCTTCACTGATTCTGAAACCCTTGGAGGGATAAAGCACTCTGTGTATATTGGTGCAATGAAGAATGAAGGCCCGAGCTCCGGAGGAAATGGTCATGCCTTCACTGATTCTGAAACCCTTGGAGGGATTAAGCACTCTGTGTATATTGGTGCAATGAAGAATGGAGGCCCGAGCTCCGGAGGAGATGGTCATGCCTTCACTGATTCTGAAACCCTTGGAGGGATCAAGCATTCTGGTCCAAGCTCTGGCGGCAGCGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

15.86

Weight (kDa)

6.58

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007489)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33710 FvH4_2g33890
malus_domestica	MD15G1076000.v1.1
prunus_persica	Prupe.1G429400_v2.0.a1
pyrus_communis	pycom08g07430
rosa_chinensis	RchiOBHm_Chr6g0308511
rosa_laevigata	RLG00000010613 RLG00000010636
rosa_multiflora	Rmu_sc0004046.1_g000010 Rmu_sc0020439.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159870 Rroxscaffold_7G00160060
rosa_rugosa	Rorug06G0367400 Rorug06G0367500 Rorug06G0367500 Rorug06G0368600
rosa_samantha	Rh6AG477300 Rh6AG480100 Rh6BG487600 Rh6BG489600 Rh6CG492600 Rh6DG478800 Rh6DG480400
rosa_wichuraiana	Rw6G041650 Rw6G041850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	452
AccIII	TCCGGA	3 cut(s)	191, 287, 383
AciI	CCGC	2 cut(s)	456, 462
AclWI	GGATC	1 cut(s)	437
AcoI	YGGCCR	1 cut(s)	3
AdeI	CACNNNGTG	2 cut(s)	250, 346
AfiI	CCNNNNNNNGG	7 cut(s)	191, 234, 287, 330, 383, 426, 452
AflII	CTTAAG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	19
AluBI	AGCT	9 cut(s)	15, 26, 60, 100, 117, 189, 285, 381, 450
AluI	AGCT	9 cut(s)	15, 26, 60, 100, 117, 189, 285, 381, 450
Alw21I	GWGCWC	5 cut(s)	62, 119, 191, 287, 383
AlwI	GGATC	1 cut(s)	437
Ama87I	CYCGRG	3 cut(s)	184, 280, 376
Aor13HI	TCCGGA	3 cut(s)	191, 287, 383
AoxI	GGCC	4 cut(s)	3, 181, 277, 373
ApeKI	GCWGC	1 cut(s)	459
AspS9I	GGNCC	4 cut(s)	182, 278, 374, 443
AvaI	CYCGRG	3 cut(s)	184, 280, 376
AvaII	GGWCC	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	5 cut(s)	62, 119, 191, 287, 383
Bbv12I	GWGCWC	5 cut(s)	62, 119, 191, 287, 383
BccI	CCATC	5 cut(s)	14, 44, 127, 143, 386
BfaI	CTAG	1 cut(s)	63
BfrI	CTTAAG	1 cut(s)	95
BisI	GCNGC	2 cut(s)	457, 460
BlsI	GCNGC	2 cut(s)	458, 461
Bme18I	GGWCC	1 cut(s)	443
BmeT110I	CYCGRG	3 cut(s)	184, 280, 376
BmgT120I	GGNCC	4 cut(s)	182, 278, 374, 443
BsaJI	CCNNGG	3 cut(s)	229, 325, 421
BsaWI	WCCGGW	3 cut(s)	191, 287, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	7 cut(s)	191, 234, 287, 330, 383, 426, 452
Bse3DI	GCAATG	3 cut(s)	174, 270, 366
BseAI	TCCGGA	3 cut(s)	191, 287, 383
BseDI	CCNNGG	3 cut(s)	229, 325, 421
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	7 cut(s)	191, 234, 287, 330, 383, 426, 452
BseMI	GCAATG	3 cut(s)	174, 270, 366
BseRI	GAGGAG	1 cut(s)	402
BseYI	CCCAGC	1 cut(s)	100
BshFI	GGCC	4 cut(s)	5, 183, 279, 375
BsiHKAI	GWGCWC	5 cut(s)	62, 119, 191, 287, 383
BsiHKCI	CYCGRG	3 cut(s)	184, 280, 376
BsiSI	CCGG	3 cut(s)	192, 288, 384
BslI	CCNNNNNNNGG	7 cut(s)	191, 234, 287, 330, 383, 426, 452
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	4 cut(s)	5, 183, 279, 375
BsoBI	CYCGRG	3 cut(s)	184, 280, 376
Bsp1286I	GDGCHC	5 cut(s)	62, 119, 191, 287, 383
Bsp13I	TCCGGA	3 cut(s)	191, 287, 383
Bsp143I	GATC	1 cut(s)	429
BspACI	CCGC	2 cut(s)	456, 462
BspANI	GGCC	4 cut(s)	5, 183, 279, 375
BspEI	TCCGGA	3 cut(s)	191, 287, 383
BspPI	GGATC	1 cut(s)	437
BspTI	CTTAAG	1 cut(s)	95
BsrDI	GCAATG	3 cut(s)	174, 270, 366
BssECI	CCNNGG	3 cut(s)	229, 325, 421
BssMI	GATC	1 cut(s)	429
BssT1I	CCWWGG	3 cut(s)	229, 325, 421
Bst4CI	ACNGT	1 cut(s)	55
BstAFI	CTTAAG	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	36
BstKTI	GATC	1 cut(s)	432
BstMBI	GATC	1 cut(s)	429
BstMWI	GCNNNNNNNGC	1 cut(s)	456
BsuRI	GGCC	4 cut(s)	5, 183, 279, 375
BtsCI	GGATG	1 cut(s)	36
BtsIMutI	CAGTG	4 cut(s)	51, 213, 309, 405
Cac8I	GCNNGC	1 cut(s)	24
Cfr13I	GGNCC	4 cut(s)	182, 278, 374, 443
CseI	GACGC	1 cut(s)	173
CviAII	CATG	4 cut(s)	111, 206, 302, 398
DpnI	GATC	1 cut(s)	431
DpnII	GATC	1 cut(s)	429
DraIII	CACNNNGTG	2 cut(s)	250, 346
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	5 cut(s)	60, 117, 189, 285, 381
Eco130I	CCWWGG	3 cut(s)	229, 325, 421
Eco24I	GRGCYC	5 cut(s)	62, 119, 191, 287, 383
Eco47I	GGWCC	1 cut(s)	443
Eco53kI	GAGCTC	5 cut(s)	60, 117, 189, 285, 381
Eco88I	CYCGRG	3 cut(s)	184, 280, 376
EcoICRI	GAGCTC	5 cut(s)	60, 117, 189, 285, 381
EcoT14I	CCWWGG	3 cut(s)	229, 325, 421
EcoT38I	GRGCYC	5 cut(s)	62, 119, 191, 287, 383
ErhI	CCWWGG	3 cut(s)	229, 325, 421
FaeI	CATG	4 cut(s)	114, 209, 305, 401
FaiI	YATR	8 cut(s)	77, 112, 122, 207, 255, 303, 351, 399
FatI	CATG	4 cut(s)	110, 205, 301, 397
Fnu4HI	GCNGC	2 cut(s)	457, 460
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	5 cut(s)	62, 119, 191, 287, 383
Fsp4HI	GCNGC	2 cut(s)	457, 460
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	2 cut(s)	457, 460
GsaI	CCCAGC	1 cut(s)	104
HaeIII	GGCC	4 cut(s)	5, 183, 279, 375
HapII	CCGG	3 cut(s)	192, 288, 384
HgaI	GACGC	1 cut(s)	173
Hin1II	CATG	4 cut(s)	114, 209, 305, 401
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	3 cut(s)	218, 314, 410
HpaII	CCGG	3 cut(s)	192, 288, 384
Hpy188I	TCNGA	4 cut(s)	82, 223, 319, 415
Hpy188III	TCNNGA	3 cut(s)	192, 288, 384
HpyAV	CCTTC	5 cut(s)	173, 220, 269, 316, 412
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	2 cut(s)	263, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	456
Hsp92II	CATG	4 cut(s)	114, 209, 305, 401
Kpn2I	TCCGGA	3 cut(s)	191, 287, 383
Kzo9I	GATC	1 cut(s)	429
LmnI	GCTCC	6 cut(s)	38, 114, 122, 194, 290, 386
LpnPI	CCDG	7 cut(s)	36, 86, 205, 301, 397, 426, 438
MaeI	CTAG	1 cut(s)	63
MalI	GATC	1 cut(s)	431
MboI	GATC	1 cut(s)	429
MboII	GAAGA	4 cut(s)	38, 184, 280, 376
MhlI	GDGCHC	5 cut(s)	62, 119, 191, 287, 383
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	8 cut(s)	102, 188, 227, 284, 323, 365, 380, 419
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	3 cut(s)	191, 287, 383
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	96, 336
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	462
MspCI	CTTAAG	1 cut(s)	95
MspI	CCGG	3 cut(s)	192, 288, 384
Mva1269I	GAATGC	1 cut(s)	436
MwoI	GCNNNNNNNGC	1 cut(s)	456
NdeII	GATC	1 cut(s)	429
NlaIII	CATG	4 cut(s)	114, 209, 305, 401
PctI	GAATGC	1 cut(s)	436
PfeI	GAWTC	3 cut(s)	218, 314, 410
PflMI	CCANNNNNTGG	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	458, 461
Psp124BI	GAGCTC	5 cut(s)	62, 119, 191, 287, 383
PspFI	CCCAGC	1 cut(s)	100
PspPI	GGNCC	4 cut(s)	182, 278, 374, 443
SacI	GAGCTC	5 cut(s)	62, 119, 191, 287, 383
SaqAI	TTAA	2 cut(s)	96, 336
SatI	GCNGC	2 cut(s)	457, 460
Sau3AI	GATC	1 cut(s)	429
Sau96I	GGNCC	4 cut(s)	182, 278, 374, 443
SduI	GDGCHC	5 cut(s)	62, 119, 191, 287, 383
SetI	ASST	9 cut(s)	17, 28, 62, 102, 119, 191, 287, 383, 452
SinI	GGWCC	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SsiI	CCGC	2 cut(s)	456, 462
SspMI	CTAG	1 cut(s)	63
SstI	GAGCTC	5 cut(s)	62, 119, 191, 287, 383
StyI	CCWWGG	3 cut(s)	229, 325, 421
TaaI	ACNGT	1 cut(s)	55
TauI	GCSGC	1 cut(s)	459
TfiI	GAWTC	3 cut(s)	218, 314, 410
Tru1I	TTAA	2 cut(s)	96, 336
Tru9I	TTAA	2 cut(s)	96, 336
TscAI	CASTG	4 cut(s)	58, 220, 316, 412
TseI	GCWGC	1 cut(s)	459
TspDTI	ATGAA	6 cut(s)	99, 148, 185, 281, 288, 377
TspRI	CASTG	4 cut(s)	58, 220, 316, 412
Van91I	CCANNNNNTGG	1 cut(s)	452
Vha464I	CTTAAG	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	443
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.