Rh6AG477300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007489
Physical Location & Seq
Forward (+)
65869370 .. 65870511
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG477300.1

Sequence Viewer

Length: 780 bp
ATGCACCCACGACATATAGTCCAGATGGCCAACAGTTCCAAGCTTCTCTTCTCCATGTTTGTTCTTGTTCTTGTAATTACCTCTAGTTGGGTTCTGATGGTATCAGAAGCACGTCCTCTGAGAATTGGTAGTGGTTTGTTTGTTATTGATGGGTTGTACATTGAAGCAATGAAGGCTGGTGGAGGTCCAAGTCCTGGTGGAAAAGGTCATGCCTTCAGCAGTTCTCAAATTCTTGGAGGAATCAAAAATGGAGGTCCAAGCTCAGGAGGGAAAGGTCATGGCTTCACAGATTCTCAAATTCTTGGAGGTATCAAAAATGAAGGTCCAAGCTCAAGTGGAAAGGGTCATGCCTTCACTACTTCTCAAACTCTTGGAGGGATAAAAAATGAAGGAGGTCCAATTGCAGGTGGAAAAGGTCATGGCTTCACCGATTCTCAAATTCTTGGGCGTATCAAAAATGAAGGTCCAAGCTCAAGTGGAAAGAGTCATGCCTTCACTACTTCTCAGACTCTTGGAGGGATCAAAAATGGAGGAGGTCCAAGTCCAGGTGGAAAAGGTCATGGCTTCACTGATTCTCAAACTCTTGGAGGGATCAAAAATGGAGGTCCAAGCTCTGGTGGAAAGGGTCATGCTTTCACCAATTCTCCTACTCTTGGAGGGATTAAAAATGGAGGTCCAAGTCCAGGTGGGAAAGGTCATGCCTTCACTAGTTCGTATCCTACTCTAGGACTTGGAGGAATCAAAGATTCTGGTCCAAGCCATGGAGGCAGTGGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

25.47

Weight (kDa)

10.08

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 395
Acc36I ACCTGC 1 cut(s) 395
AccB7I CCANNNNNTGG 3 cut(s) 194, 614, 761
AclWI GGATC 2 cut(s) 527, 599
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 3 cut(s) 228, 297, 438
AcuI CTGAAG 1 cut(s) 199
AfaI GTAC 1 cut(s) 158
AgsI TTSAA 1 cut(s) 164
AhdI GACNNNNNGTC 1 cut(s) 17
AhlI ACTAGT 1 cut(s) 707
AjiI CACGTC 1 cut(s) 113
AjnI CCWGG 3 cut(s) 193, 544, 682
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 5 cut(s) 43, 261, 330, 471, 612
AluI AGCT 5 cut(s) 43, 261, 330, 471, 612
AlwI GGATC 2 cut(s) 527, 599
AoxI GGCC 1 cut(s) 27
ApoI RAATTY 3 cut(s) 228, 297, 438
AspS9I GGNCC 9 cut(s) 185, 254, 323, 395, 464, 536, 605, 674, 752
AsuHPI GGTGA 2 cut(s) 418, 628
AvaII GGWCC 9 cut(s) 185, 254, 323, 395, 464, 536, 605, 674, 752
BalI TGGCCA 1 cut(s) 29
BccI CCATC 3 cut(s) 19, 91, 143
BciT130I CCWGG 3 cut(s) 195, 546, 684
BciVI GTATCC 1 cut(s) 726
BcuI ACTAGT 1 cut(s) 707
BfaI CTAG 3 cut(s) 84, 708, 725
BfuAI ACCTGC 1 cut(s) 395
BfuI GTATCC 1 cut(s) 726
BglI GCCNNNNNGGC 1 cut(s) 765
Bme1390I CCNGG 3 cut(s) 195, 546, 684
Bme18I GGWCC 9 cut(s) 185, 254, 323, 395, 464, 536, 605, 674, 752
BmeRI GACNNNNNGTC 1 cut(s) 17
BmgBI CACGTC 1 cut(s) 113
BmgT120I GGNCC 9 cut(s) 185, 254, 323, 395, 464, 536, 605, 674, 752
BmrFI CCNGG 3 cut(s) 195, 546, 684
Bpu10I CCTNAGC 1 cut(s) 262
BpuEI CTTGAG 2 cut(s) 316, 457
BsaJI CCNNGG 1 cut(s) 760
BsaXI ACNNNNNCTCC 2 cut(s) 628, 658
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 3 cut(s) 195, 546, 684
BseDI CCNNGG 1 cut(s) 760
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 3 cut(s) 110, 276, 518
BseRI GAGGAG 1 cut(s) 546
BshFI GGCC 1 cut(s) 29
BsnI GGCC 1 cut(s) 29
Bsp1407I TGTACA 1 cut(s) 156
Bsp143I GATC 2 cut(s) 519, 591
Bsp19I CCATGG 1 cut(s) 760
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 3 cut(s) 111, 275, 517
BspMI ACCTGC 1 cut(s) 395
BspPI GGATC 2 cut(s) 527, 599
BsrDI GCAATG 1 cut(s) 174
BsrGI TGTACA 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 760
BssMI GATC 2 cut(s) 519, 591
BssT1I CCWWGG 1 cut(s) 760
Bst2UI CCWGG 3 cut(s) 195, 546, 684
Bst4CI ACNGT 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 53
BstAUI TGTACA 1 cut(s) 156
BstDEI CTNAG 3 cut(s) 119, 262, 504
BstDSI CCRYGG 1 cut(s) 760
BstENI CCTNNNNNAGG 1 cut(s) 723
BstKTI GATC 2 cut(s) 522, 594
BstMBI GATC 2 cut(s) 519, 591
BstMWI GCNNNNNNNGC 2 cut(s) 173, 765
BstNI CCWGG 3 cut(s) 195, 546, 684
BstSCI CCNGG 3 cut(s) 193, 544, 682
BsuI GTATCC 1 cut(s) 726
BsuRI GGCC 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 760
BtrI CACGTC 1 cut(s) 113
BtsI GCAGTG 1 cut(s) 775
BtsIMutI CAGTG 2 cut(s) 567, 775
BveI ACCTGC 1 cut(s) 395
Cfr13I GGNCC 9 cut(s) 185, 254, 323, 395, 464, 536, 605, 674, 752
Csp6I GTAC 1 cut(s) 157
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 3 cut(s) 119, 262, 504
DpnI GATC 2 cut(s) 521, 593
DpnII GATC 2 cut(s) 519, 591
DriI GACNNNNNGTC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 53
Eam1105I GACNNNNNGTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 760
Eco47I GGWCC 9 cut(s) 185, 254, 323, 395, 464, 536, 605, 674, 752
Eco57I CTGAAG 1 cut(s) 199
EcoNI CCTNNNNNAGG 1 cut(s) 723
EcoRII CCWGG 3 cut(s) 193, 544, 682
EcoT14I CCWWGG 1 cut(s) 760
ErhI CCWWGG 1 cut(s) 760
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FspBI CTAG 3 cut(s) 84, 708, 725
HaeIII GGCC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 8 cut(s) 240, 290, 431, 484, 508, 572, 738, 746
HphI GGTGA 2 cut(s) 418, 628
Hpy188I TCNGA 4 cut(s) 96, 106, 120, 507
Hpy188III TCNNGA 2 cut(s) 22, 264
HpyAV CCTTC 8 cut(s) 166, 223, 314, 361, 383, 455, 502, 712
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 4, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 765
HpyF3I CTNAG 3 cut(s) 119, 262, 504
HpySE526I ACGT 1 cut(s) 112
Kzo9I GATC 2 cut(s) 519, 591
MaeI CTAG 3 cut(s) 84, 708, 725
MaeII ACGT 1 cut(s) 112
MalI GATC 2 cut(s) 521, 593
MboI GATC 2 cut(s) 519, 591
MboII GAAGA 1 cut(s) 40
MfeI CAATTG 1 cut(s) 399
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 7 cut(s) 75, 123, 228, 297, 399, 438, 640
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 2 cut(s) 493, 502
Mox20I TGGCCA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 29
MseI TTAA 1 cut(s) 663
Msp20I TGGCCA 1 cut(s) 29
MspR9I CCNGG 3 cut(s) 195, 546, 684
MunI CAATTG 1 cut(s) 399
MvaI CCWGG 3 cut(s) 195, 546, 684
MwoI GCNNNNNNNGC 2 cut(s) 173, 765
NcoI CCATGG 1 cut(s) 760
NdeII GATC 2 cut(s) 519, 591
PaqCI CACCTGC 1 cut(s) 395
PfeI GAWTC 6 cut(s) 240, 290, 431, 572, 738, 746
PflMI CCANNNNNTGG 3 cut(s) 194, 614, 761
PleI GAGTC 2 cut(s) 492, 502
PpsI GAGTC 2 cut(s) 492, 502
Psp6I CCWGG 3 cut(s) 193, 544, 682
PspGI CCWGG 3 cut(s) 193, 544, 682
PspPI GGNCC 9 cut(s) 185, 254, 323, 395, 464, 536, 605, 674, 752
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 663
Sau3AI GATC 2 cut(s) 519, 591
Sau96I GGNCC 9 cut(s) 185, 254, 323, 395, 464, 536, 605, 674, 752
SchI GAGTC 2 cut(s) 493, 502
ScrFI CCNGG 3 cut(s) 195, 546, 684
SinI GGWCC 9 cut(s) 185, 254, 323, 395, 464, 536, 605, 674, 752
SmlI CTYRAG 2 cut(s) 331, 472
SmoI CTYRAG 2 cut(s) 331, 472
SpeI ACTAGT 1 cut(s) 707
Sse9I AATT 7 cut(s) 75, 123, 228, 297, 399, 438, 640
SspMI CTAG 3 cut(s) 84, 708, 725
StyD4I CCNGG 3 cut(s) 193, 544, 682
StyI CCWWGG 1 cut(s) 760
TaaI ACNGT 1 cut(s) 35
TaiI ACGT 1 cut(s) 115
TasI AATT 7 cut(s) 75, 123, 228, 297, 399, 438, 640
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 6 cut(s) 240, 290, 431, 572, 738, 746
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 2 cut(s) 574, 775
TspDTI ATGAA 4 cut(s) 185, 333, 402, 474
TspRI CASTG 2 cut(s) 574, 775
Van91I CCANNNNNTGG 3 cut(s) 194, 614, 761
VpaK11BI GGWCC 9 cut(s) 185, 254, 323, 395, 464, 536, 605, 674, 752
XagI CCTNNNNNAGG 1 cut(s) 723
XapI RAATTY 3 cut(s) 228, 297, 438
XcmI CCANNNNNNNNNTGG 1 cut(s) 767
XspI CTAG 3 cut(s) 84, 708, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.