Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007489

Physical Location & Seq

Genomic Coordinates Forward (+)

6004522 .. 6006321

Gene Structure 1800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g07430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCGCGCAGTAACGAAAACCAATGAGGTTAGTGATGAGCAAATATTTTCTTCGGTCTTCTGGTTGGCCAGTTGGCAAGCATACCTTTCAAGGTGTATTTTTATTCCATTTGGACCAAGAATTTCCAGACCATTACTCATTGCTCTTCTGAATTCTGAACCAGTTGTGGATTATGCTCGTTTGGAATTCGCTGGCACTGGCACCCCATGCACTTTCCCACACATTTCTTCCTTCCCAAGTCAAAAATATGAAGCTCACATTCCCACCTCCTCCCCACACACTCGGACACTACTATCTATAGCACCCAAATCCCCACTCGCTTCTTCCAAACCAAATCAAACCGAAAACTCAAACACCGGCCAGAAGCATAGTCTGATCAAGCACCATCGAACATTTCGCAATATATTCTTCTTCCAGATGGCGAAAAGTTGGAAACCCTTGTTCTCCTTCCTTGTTGCCGTCCTTGTCGTAAGCTCTTTGGTTTTGTGTACGTCGGAGGCTCGTTCTCTTAAGTTGGCGAACATAGACAAGGAGATGGAGAGTGTGTTTGATGGGTTATATATTGGAACTATGAAGGAAGGTCCGAGCGACGGAAGGGGTCATGCGTTCACCGAGTCGGAAACCCTAGGAGGGAACAAATCTGGTCCTAGCTCTAGCGGTGAGGGACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

24.58

Weight (kDa)

9.01

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007489)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33710 FvH4_2g33890
malus_domestica	MD15G1076000.v1.1
prunus_persica	Prupe.1G429400_v2.0.a1
pyrus_communis	pycom08g07430
rosa_chinensis	RchiOBHm_Chr6g0308511
rosa_laevigata	RLG00000010613 RLG00000010636
rosa_multiflora	Rmu_sc0004046.1_g000010 Rmu_sc0020439.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159870 Rroxscaffold_7G00160060
rosa_rugosa	Rorug06G0367400 Rorug06G0367500 Rorug06G0367500 Rorug06G0368600
rosa_samantha	Rh6AG477300 Rh6AG480100 Rh6BG487600 Rh6BG489600 Rh6CG492600 Rh6DG478800 Rh6DG480400
rosa_wichuraiana	Rw6G041650 Rw6G041850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AccII	CGCG	1 cut(s)	6
AciI	CCGC	1 cut(s)	657
AcoI	YGGCCR	2 cut(s)	66, 358
AcsI	RAATTY	3 cut(s)	120, 151, 185
AfaI	GTAC	1 cut(s)	490
AfiI	CCNNNNNNNGG	2 cut(s)	590, 630
AflII	CTTAAG	1 cut(s)	509
AgsI	TTSAA	1 cut(s)	90
AluBI	AGCT	3 cut(s)	254, 474, 651
AluI	AGCT	3 cut(s)	254, 474, 651
AoxI	GGCC	2 cut(s)	66, 358
ApoI	RAATTY	3 cut(s)	120, 151, 185
AspA2I	CCTAGG	1 cut(s)	625
AspLEI	GCGC	2 cut(s)	6, 8
AspS9I	GGNCC	3 cut(s)	113, 581, 644
AsuHPI	GGTGA	2 cut(s)	601, 671
AvaII	GGWCC	3 cut(s)	113, 581, 644
AvrII	CCTAGG	1 cut(s)	625
BalI	TGGCCA	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	49
BccI	CCATC	4 cut(s)	393, 412, 529, 545
BceAI	ACGGC	1 cut(s)	443
BclI	TGATCA	1 cut(s)	375
BfaI	CTAG	3 cut(s)	626, 648, 654
BfmI	CTRYAG	1 cut(s)	297
BfrI	CTTAAG	1 cut(s)	509
BlnI	CCTAGG	1 cut(s)	625
Bme18I	GGWCC	3 cut(s)	113, 581, 644
BmgT120I	GGNCC	3 cut(s)	113, 581, 644
BmiI	GGNNCC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	625
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bsc4I	CCNNNNNNNGG	2 cut(s)	590, 630
Bse118I	RCCGGY	1 cut(s)	356
Bse1I	ACTGG	3 cut(s)	69, 161, 202
Bse3DI	GCAATG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	625
BseLI	CCNNNNNNNGG	2 cut(s)	590, 630
BseMI	GCAATG	1 cut(s)	138
BseNI	ACTGG	3 cut(s)	69, 161, 202
BsePI	GCGCGC	1 cut(s)	4
BseRI	GAGGAG	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	2 cut(s)	68, 360
BshNI	GGYRCC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	590, 630
BsnI	GGCC	2 cut(s)	68, 360
Bsp143I	GATC	1 cut(s)	375
BspACI	CCGC	1 cut(s)	657
BspANI	GGCC	2 cut(s)	68, 360
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	200
BspTI	CTTAAG	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	356
BsrI	ACTGG	3 cut(s)	69, 161, 202
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	625
BssHII	GCGCGC	1 cut(s)	4
BssMI	GATC	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	625
Bst6I	CTCTTC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	509
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstC8I	GCNNGC	3 cut(s)	6, 78, 193
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	2 cut(s)	6, 8
BstKTI	GATC	1 cut(s)	378
BstMBI	GATC	1 cut(s)	375
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	6
BstV2I	GAAGAC	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	68, 360
BtsIMutI	CAGTG	2 cut(s)	195, 667
Cac8I	GCNNGC	3 cut(s)	6, 78, 193
CfoI	GCGC	2 cut(s)	6, 8
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	3 cut(s)	113, 581, 644
Csp6I	GTAC	1 cut(s)	489
CviAII	CATG	2 cut(s)	207, 602
CviJI	RGCY	6 cut(s)	68, 254, 360, 474, 500, 651
CviKI_1	RGCY	6 cut(s)	68, 254, 360, 474, 500, 651
CviQI	GTAC	1 cut(s)	489
DpnI	GATC	1 cut(s)	377
DpnII	GATC	1 cut(s)	375
EaeI	YGGCCR	2 cut(s)	66, 358
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	625
Eco47I	GGWCC	3 cut(s)	113, 581, 644
EcoRI	GAATTC	2 cut(s)	151, 185
EcoT14I	CCWWGG	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	625
FaeI	CATG	2 cut(s)	210, 605
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FatI	CATG	2 cut(s)	206, 601
FbaI	TGATCA	1 cut(s)	375
FspBI	CTAG	3 cut(s)	626, 648, 654
GlaI	GCGC	2 cut(s)	5, 7
HaeIII	GGCC	2 cut(s)	68, 360
HapII	CCGG	1 cut(s)	357
HhaI	GCGC	2 cut(s)	6, 8
Hin1II	CATG	2 cut(s)	210, 605
Hin6I	GCGC	2 cut(s)	4, 6
HinP1I	GCGC	2 cut(s)	4, 6
HinfI	GANTC	1 cut(s)	614
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	2 cut(s)	601, 671
Hpy166II	GTNNAC	2 cut(s)	489, 609
Hpy188I	TCNGA	7 cut(s)	150, 157, 285, 375, 496, 585, 619
Hpy188III	TCNNGA	2 cut(s)	126, 415
Hpy8I	GTNNAC	2 cut(s)	489, 609
Hpy99I	CGWCG	2 cut(s)	496, 593
HpyAV	CCTTC	5 cut(s)	241, 457, 568, 572, 588
HpyCH4IV	ACGT	1 cut(s)	491
HpyCH4V	TGCA	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	491
Hsp92II	CATG	2 cut(s)	210, 605
HspAI	GCGC	2 cut(s)	4, 6
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	1 cut(s)	375
LguI	GCTCTTC	1 cut(s)	150
MaeI	CTAG	3 cut(s)	626, 648, 654
MaeII	ACGT	1 cut(s)	491
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	1 cut(s)	377
MboI	GATC	1 cut(s)	375
MboII	GAAGA	7 cut(s)	42, 49, 137, 219, 315, 400, 403
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	3 cut(s)	120, 151, 185
MluNI	TGGCCA	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	3 cut(s)	410, 474, 597
MnlI	CCTC	6 cut(s)	19, 277, 280, 490, 623, 655
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	68
MspCI	CTTAAG	1 cut(s)	509
MspI	CCGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeII	GATC	1 cut(s)	375
NlaIII	CATG	2 cut(s)	210, 605
NlaIV	GGNNCC	1 cut(s)	202
PauI	GCGCGC	1 cut(s)	4
PciSI	GCTCTTC	1 cut(s)	150
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	3 cut(s)	113, 581, 644
PteI	GCGCGC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	490
RsaNI	GTAC	1 cut(s)	489
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	510
Sau3AI	GATC	1 cut(s)	375
Sau96I	GGNCC	3 cut(s)	113, 581, 644
SchI	GAGTC	1 cut(s)	623
SetI	ASST	9 cut(s)	30, 87, 95, 256, 269, 476, 494, 583, 653
SfcI	CTRYAG	1 cut(s)	297
SinI	GGWCC	3 cut(s)	113, 581, 644
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	3 cut(s)	120, 151, 185
SsiI	CCGC	1 cut(s)	657
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	3 cut(s)	626, 648, 654
StyI	CCWWGG	1 cut(s)	625
TaiI	ACGT	1 cut(s)	494
TaqI	TCGA	1 cut(s)	388
TaqII	GACCGA	1 cut(s)	43
TasI	AATT	3 cut(s)	120, 151, 185
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	264, 587
TspGWI	ACGGA	1 cut(s)	606
TspRI	CASTG	1 cut(s)	202
Vha464I	CTTAAG	1 cut(s)	509
VpaK11BI	GGWCC	3 cut(s)	113, 581, 644
XapI	RAATTY	3 cut(s)	120, 151, 185
XmaJI	CCTAGG	1 cut(s)	625
XspI	CTAG	3 cut(s)	626, 648, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.