Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007489

Physical Location & Seq

Genomic Coordinates Forward (+)

69181188 .. 69182012

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG487600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCCAACAGTTCCAAGCTTCTCTTCTCCTTGTTTGTTCTTGTTCTTGTAATTACCTCTAGTTGGGTTCTGATGGTATCAGAAGCACGTCCTCTGAGAATTGGTAGTGGTTTGTTTGTTATTGATGGGTTGTACATTGAAGCAATGAAGGCTGGTGGAGGTCCAAGTCCTGGTGGAAAAGGTCATGCCTTCAGCAGTTCTCAAATTCTTGGAGGAATCAAAAATGGAGGTCCAAGCTCAGGAGGGAAAGGTCATGGCTTCACAGATTCTCAAATTCTTGGAGGTATCAAAAATGAAGGTCCAAGCTCAAGTGGAAAGGGTCATGCCTTCACTACTTCTCAAACTCTTGGAGGGATCAAAAATGAAGGAGGTCCAAGTCCAGGTGGAAAAGGTCATGGCTTCACCGATTCTCAAATTCTTGGAGGTATCAAAAATGAAGGTCCAAGCTCAAGTGGAAAGGGTCATGCCTTCACTACTTCTCAGACTCTTGGAGGGATCAAAAATGGAGGAGGTCCAAGTCCAGGTGGAAAAGGTCATGGCTTTACGGATTCTCAGATTCTTGGAGGTATCAAAAATGGAGGTCCAAGTCCAGGTGGAAAAGGTCATGGCTTCACTGATTCTCAAACTCTTGGAGGGATCAAAAATGGAGGTCCAAGCTCTGGTGGAAAGGGTCATGCTTTCACCAATTCTCCTACTCTTGGAGGGATTAAAAATGGAGGTCCAAGTCCAGGTGGGAAAGGTCATGCCTTCACTAGTTCGTATCCTACTCTAGGACTTGGAGGGATCAAAGATTCTGGTCCAAGCCATGGAGGCAGTGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

26.49

Weight (kDa)

9.92

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007489)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33710 FvH4_2g33890
malus_domestica	MD15G1076000.v1.1
prunus_persica	Prupe.1G429400_v2.0.a1
pyrus_communis	pycom08g07430
rosa_chinensis	RchiOBHm_Chr6g0308511
rosa_laevigata	RLG00000010613 RLG00000010636
rosa_multiflora	Rmu_sc0004046.1_g000010 Rmu_sc0020439.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159870 Rroxscaffold_7G00160060
rosa_rugosa	Rorug06G0367400 Rorug06G0367500 Rorug06G0367500 Rorug06G0368600
rosa_samantha	Rh6AG477300 Rh6AG480100 Rh6BG487600 Rh6BG489600 Rh6CG492600 Rh6DG478800 Rh6DG480400
rosa_wichuraiana	Rw6G041650 Rw6G041850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	170, 659, 806
AclWI	GGATC	4 cut(s)	362, 503, 644, 791
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	204, 273, 414
AcuI	CTGAAG	1 cut(s)	175
AfaI	GTAC	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	140
AhlI	ACTAGT	1 cut(s)	752
AjiI	CACGTC	1 cut(s)	89
AjnI	CCWGG	5 cut(s)	169, 379, 520, 589, 727
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	5 cut(s)	19, 237, 306, 447, 657
AluI	AGCT	5 cut(s)	19, 237, 306, 447, 657
AlwI	GGATC	4 cut(s)	362, 503, 644, 791
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	3 cut(s)	204, 273, 414
AsuHPI	GGTGA	2 cut(s)	394, 673
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	2 cut(s)	67, 119
BciT130I	CCWGG	5 cut(s)	171, 381, 522, 591, 729
BciVI	GTATCC	1 cut(s)	771
BcuI	ACTAGT	1 cut(s)	752
BfaI	CTAG	3 cut(s)	60, 753, 770
BfuI	GTATCC	1 cut(s)	771
BglI	GCCNNNNNGGC	1 cut(s)	810
Bme1390I	CCNGG	5 cut(s)	171, 381, 522, 591, 729
BmgBI	CACGTC	1 cut(s)	89
BmrFI	CCNGG	5 cut(s)	171, 381, 522, 591, 729
Bpu10I	CCTNAGC	1 cut(s)	238
BpuEI	CTTGAG	2 cut(s)	292, 433
BsaJI	CCNNGG	1 cut(s)	805
BsaXI	ACNNNNNCTCC	2 cut(s)	673, 703
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	5 cut(s)	171, 381, 522, 591, 729
BseDI	CCNNGG	1 cut(s)	805
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	4 cut(s)	86, 252, 494, 566
BseRI	GAGGAG	1 cut(s)	522
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	354, 495, 636, 783
Bsp19I	CCATGG	1 cut(s)	805
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	87, 251, 493, 565
BspPI	GGATC	4 cut(s)	362, 503, 644, 791
BsrDI	GCAATG	1 cut(s)	150
BsrGI	TGTACA	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	805
BssMI	GATC	4 cut(s)	354, 495, 636, 783
BssT1I	CCWWGG	1 cut(s)	805
Bst2UI	CCWGG	5 cut(s)	171, 381, 522, 591, 729
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	132
BstDEI	CTNAG	4 cut(s)	95, 238, 480, 552
BstDSI	CCRYGG	1 cut(s)	805
BstENI	CCTNNNNNAGG	1 cut(s)	768
BstKTI	GATC	4 cut(s)	357, 498, 639, 786
BstMBI	GATC	4 cut(s)	354, 495, 636, 783
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 810
BstNI	CCWGG	5 cut(s)	171, 381, 522, 591, 729
BstSCI	CCNGG	5 cut(s)	169, 379, 520, 589, 727
BsuI	GTATCC	1 cut(s)	771
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	805
BtrI	CACGTC	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	820
BtsIMutI	CAGTG	2 cut(s)	612, 820
Csp6I	GTAC	1 cut(s)	133
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	4 cut(s)	95, 238, 480, 552
DpnI	GATC	4 cut(s)	356, 497, 638, 785
DpnII	GATC	4 cut(s)	354, 495, 636, 783
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	805
Eco57I	CTGAAG	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	768
EcoRII	CCWGG	5 cut(s)	169, 379, 520, 589, 727
EcoT14I	CCWWGG	1 cut(s)	805
ErhI	CCWWGG	1 cut(s)	805
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FspBI	CTAG	3 cut(s)	60, 753, 770
HaeIII	GGCC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	8 cut(s)	216, 266, 407, 484, 548, 556, 617, 791
HphI	GGTGA	2 cut(s)	394, 673
Hpy188I	TCNGA	5 cut(s)	72, 82, 96, 483, 555
Hpy188III	TCNNGA	1 cut(s)	240
HpyAV	CCTTC	8 cut(s)	142, 199, 290, 337, 359, 431, 478, 757
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 810
HpyF3I	CTNAG	4 cut(s)	95, 238, 480, 552
HpySE526I	ACGT	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	354, 495, 636, 783
MaeI	CTAG	3 cut(s)	60, 753, 770
MaeII	ACGT	1 cut(s)	88
MalI	GATC	4 cut(s)	356, 497, 638, 785
MboI	GATC	4 cut(s)	354, 495, 636, 783
MboII	GAAGA	1 cut(s)	16
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	51, 99, 204, 273, 414, 685
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	478
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	708
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	5 cut(s)	171, 381, 522, 591, 729
MvaI	CCWGG	5 cut(s)	171, 381, 522, 591, 729
MwoI	GCNNNNNNNGC	2 cut(s)	149, 810
NcoI	CCATGG	1 cut(s)	805
NdeII	GATC	4 cut(s)	354, 495, 636, 783
PfeI	GAWTC	7 cut(s)	216, 266, 407, 548, 556, 617, 791
PflMI	CCANNNNNTGG	3 cut(s)	170, 659, 806
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Psp6I	CCWGG	5 cut(s)	169, 379, 520, 589, 727
PspGI	CCWGG	5 cut(s)	169, 379, 520, 589, 727
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	708
Sau3AI	GATC	4 cut(s)	354, 495, 636, 783
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	5 cut(s)	171, 381, 522, 591, 729
SmlI	CTYRAG	2 cut(s)	307, 448
SmoI	CTYRAG	2 cut(s)	307, 448
SpeI	ACTAGT	1 cut(s)	752
Sse9I	AATT	6 cut(s)	51, 99, 204, 273, 414, 685
SspMI	CTAG	3 cut(s)	60, 753, 770
StyD4I	CCNGG	5 cut(s)	169, 379, 520, 589, 727
StyI	CCWWGG	1 cut(s)	805
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	91
TasI	AATT	6 cut(s)	51, 99, 204, 273, 414, 685
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	7 cut(s)	216, 266, 407, 548, 556, 617, 791
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	2 cut(s)	619, 820
TspDTI	ATGAA	4 cut(s)	161, 309, 378, 450
TspGWI	ACGGA	1 cut(s)	560
TspRI	CASTG	2 cut(s)	619, 820
Van91I	CCANNNNNTGG	3 cut(s)	170, 659, 806
XagI	CCTNNNNNAGG	1 cut(s)	768
XapI	RAATTY	3 cut(s)	204, 273, 414
XcmI	CCANNNNNNNNNTGG	1 cut(s)	812
XspI	CTAG	3 cut(s)	60, 753, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.