RchiOBHm_Chr6g0308511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0007489
Physical Location & Seq
Forward (+)
66593943 .. 66594698
756 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27741

Sequence Viewer

Length: 756 bp
ATGGCCAACAGTTCCAAGCTTCTCTTCTCCATGTTTGTTCTTGTTCTTGTAATTACCTCTAGTTGGGTTCTGATGGTATCAGAAGCACGTCCTCTGAGAATTGGTAGTGGTTTGTTTGTTATTGATGGGTTGTACATTGAAGCAATGAAGGCTGGTGGAGGTCCAAGTCCTGGTGGAAAAGGTCATGCCTTCAGCAGTTCTCAAATTCTTGGAGGAATCAAAAATGGAGGTCCAAGCTCAGGAGGGAAAGGTCATGGCTTCACAGATTCTCAAATTCTTGGAGGTATCAAAAATGAAGGTCCAAGCTCAAGTGGAAAGGGTCATGCCTTCACTACTTCTCAAACTCTTGGAGGGATAAAAAATGAAGGAGGTCCAATTGCAGGTGGAAAAGGTCATGGCTTCACCGATTCTCAAATTCTTGGGCGTATCAAAAATGAAGGTCCAAGCTCAAGTGGAAAGAGTCATGCCTTCACTACTTCTCAGACTCTTGGAGGGATCAAAAATGGAGGAGGTCCAAGTCCAGGTGGAAAAGGTCATGGCTTCACTGATTCTCAAACTCTTGGAGGGATCAAAAATGGAGGTCCAAGCTCTGGTGGAAAGGGTCATGCTTTCACCAATTCTCCTACTCTTGGAGGGATTAAAAATGGAGGTCCAAGTCCAGGTGGGAAAGGTCATGCCTTCACTAGTTCGTATCCTACTCTAGGACTTGGAGGAATCAAAGATTCTGGTCCAAGCCATGGAGGCAGTGGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

24.47

Weight (kDa)

10.0

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 371
Acc36I ACCTGC 1 cut(s) 371
AccB7I CCANNNNNTGG 3 cut(s) 170, 590, 737
AclWI GGATC 2 cut(s) 503, 575
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 204, 273, 414
AcuI CTGAAG 1 cut(s) 175
AfaI GTAC 1 cut(s) 134
AgsI TTSAA 1 cut(s) 140
AhlI ACTAGT 1 cut(s) 683
AjiI CACGTC 1 cut(s) 89
AjnI CCWGG 3 cut(s) 169, 520, 658
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 5 cut(s) 19, 237, 306, 447, 588
AluI AGCT 5 cut(s) 19, 237, 306, 447, 588
AlwI GGATC 2 cut(s) 503, 575
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 3 cut(s) 204, 273, 414
AspS9I GGNCC 9 cut(s) 161, 230, 299, 371, 440, 512, 581, 650, 728
AsuHPI GGTGA 2 cut(s) 394, 604
AvaII GGWCC 9 cut(s) 161, 230, 299, 371, 440, 512, 581, 650, 728
BalI TGGCCA 1 cut(s) 5
BccI CCATC 2 cut(s) 67, 119
BciT130I CCWGG 3 cut(s) 171, 522, 660
BciVI GTATCC 1 cut(s) 702
BcuI ACTAGT 1 cut(s) 683
BfaI CTAG 3 cut(s) 60, 684, 701
BfuAI ACCTGC 1 cut(s) 371
BfuI GTATCC 1 cut(s) 702
BglI GCCNNNNNGGC 1 cut(s) 741
Bme1390I CCNGG 3 cut(s) 171, 522, 660
Bme18I GGWCC 9 cut(s) 161, 230, 299, 371, 440, 512, 581, 650, 728
BmgBI CACGTC 1 cut(s) 89
BmgT120I GGNCC 9 cut(s) 161, 230, 299, 371, 440, 512, 581, 650, 728
BmrFI CCNGG 3 cut(s) 171, 522, 660
Bpu10I CCTNAGC 1 cut(s) 238
BpuEI CTTGAG 2 cut(s) 292, 433
BsaJI CCNNGG 1 cut(s) 736
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 3 cut(s) 171, 522, 660
BseDI CCNNGG 1 cut(s) 736
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 3 cut(s) 86, 252, 494
BseRI GAGGAG 1 cut(s) 522
BshFI GGCC 1 cut(s) 5
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 2 cut(s) 495, 567
Bsp19I CCATGG 1 cut(s) 736
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 87, 251, 493
BspMI ACCTGC 1 cut(s) 371
BspPI GGATC 2 cut(s) 503, 575
BsrDI GCAATG 1 cut(s) 150
BsrGI TGTACA 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 736
BssMI GATC 2 cut(s) 495, 567
BssT1I CCWWGG 1 cut(s) 736
Bst2UI CCWGG 3 cut(s) 171, 522, 660
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 132
BstDEI CTNAG 3 cut(s) 95, 238, 480
BstDSI CCRYGG 1 cut(s) 736
BstENI CCTNNNNNAGG 1 cut(s) 699
BstKTI GATC 2 cut(s) 498, 570
BstMBI GATC 2 cut(s) 495, 567
BstMWI GCNNNNNNNGC 2 cut(s) 149, 741
BstNI CCWGG 3 cut(s) 171, 522, 660
BstSCI CCNGG 3 cut(s) 169, 520, 658
BsuI GTATCC 1 cut(s) 702
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 736
BtrI CACGTC 1 cut(s) 89
BtsI GCAGTG 1 cut(s) 751
BtsIMutI CAGTG 2 cut(s) 543, 751
BveI ACCTGC 1 cut(s) 371
Cfr13I GGNCC 9 cut(s) 161, 230, 299, 371, 440, 512, 581, 650, 728
Csp6I GTAC 1 cut(s) 133
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 3 cut(s) 95, 238, 480
DpnI GATC 2 cut(s) 497, 569
DpnII GATC 2 cut(s) 495, 567
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 736
Eco47I GGWCC 9 cut(s) 161, 230, 299, 371, 440, 512, 581, 650, 728
Eco57I CTGAAG 1 cut(s) 175
EcoNI CCTNNNNNAGG 1 cut(s) 699
EcoRII CCWGG 3 cut(s) 169, 520, 658
EcoT14I CCWWGG 1 cut(s) 736
ErhI CCWWGG 1 cut(s) 736
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FspBI CTAG 3 cut(s) 60, 684, 701
HaeIII GGCC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 8 cut(s) 216, 266, 407, 460, 484, 548, 714, 722
HphI GGTGA 2 cut(s) 394, 604
Hpy188I TCNGA 4 cut(s) 72, 82, 96, 483
Hpy188III TCNNGA 1 cut(s) 240
HpyAV CCTTC 8 cut(s) 142, 199, 290, 337, 359, 431, 478, 688
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 741
HpyF3I CTNAG 3 cut(s) 95, 238, 480
HpySE526I ACGT 1 cut(s) 88
Kzo9I GATC 2 cut(s) 495, 567
MaeI CTAG 3 cut(s) 60, 684, 701
MaeII ACGT 1 cut(s) 88
MalI GATC 2 cut(s) 497, 569
MboI GATC 2 cut(s) 495, 567
MboII GAAGA 1 cut(s) 16
MfeI CAATTG 1 cut(s) 375
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 51, 99, 204, 273, 375, 414, 616
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 469, 478
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 639
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 3 cut(s) 171, 522, 660
MunI CAATTG 1 cut(s) 375
MvaI CCWGG 3 cut(s) 171, 522, 660
MwoI GCNNNNNNNGC 2 cut(s) 149, 741
NcoI CCATGG 1 cut(s) 736
NdeII GATC 2 cut(s) 495, 567
PaqCI CACCTGC 1 cut(s) 371
PfeI GAWTC 6 cut(s) 216, 266, 407, 548, 714, 722
PflMI CCANNNNNTGG 3 cut(s) 170, 590, 737
PleI GAGTC 2 cut(s) 468, 478
PpsI GAGTC 2 cut(s) 468, 478
Psp6I CCWGG 3 cut(s) 169, 520, 658
PspGI CCWGG 3 cut(s) 169, 520, 658
PspPI GGNCC 9 cut(s) 161, 230, 299, 371, 440, 512, 581, 650, 728
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 639
Sau3AI GATC 2 cut(s) 495, 567
Sau96I GGNCC 9 cut(s) 161, 230, 299, 371, 440, 512, 581, 650, 728
SchI GAGTC 2 cut(s) 469, 478
ScrFI CCNGG 3 cut(s) 171, 522, 660
SinI GGWCC 9 cut(s) 161, 230, 299, 371, 440, 512, 581, 650, 728
SmlI CTYRAG 2 cut(s) 307, 448
SmoI CTYRAG 2 cut(s) 307, 448
SpeI ACTAGT 1 cut(s) 683
Sse9I AATT 7 cut(s) 51, 99, 204, 273, 375, 414, 616
SspMI CTAG 3 cut(s) 60, 684, 701
StyD4I CCNGG 3 cut(s) 169, 520, 658
StyI CCWWGG 1 cut(s) 736
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 91
TasI AATT 7 cut(s) 51, 99, 204, 273, 375, 414, 616
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 6 cut(s) 216, 266, 407, 548, 714, 722
Tru1I TTAA 1 cut(s) 639
Tru9I TTAA 1 cut(s) 639
TscAI CASTG 2 cut(s) 550, 751
TspDTI ATGAA 4 cut(s) 161, 309, 378, 450
TspRI CASTG 2 cut(s) 550, 751
Van91I CCANNNNNTGG 3 cut(s) 170, 590, 737
VpaK11BI GGWCC 9 cut(s) 161, 230, 299, 371, 440, 512, 581, 650, 728
XagI CCTNNNNNAGG 1 cut(s) 699
XapI RAATTY 3 cut(s) 204, 273, 414
XcmI CCANNNNNNNNNTGG 1 cut(s) 743
XspI CTAG 3 cut(s) 60, 684, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.