Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007489

Physical Location & Seq

Genomic Coordinates Forward (+)

5176871 .. 5177134

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1076000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCAAAAAGTTTGAAAGCCTTGTGCTCCTCACTTGTTGTTCTTCTCGTCGTAAGCTCTTTGGTTTCGTGTATGTTGGAGGCTCGTCCTCTTAAGTTGGGGAACATAGACAAAGAGATGGAGAGTGTGTTCGATGGATTGTATATTGGAACAATGAAGAATGAAGGTCCGAGCGACGCAGGAAAGGGTCATGCGTTCACTGAGTCGGAAACCCTAGGAGGGATAAAAGATTCTGGTCCTGGACCTAGCGGTCCGGGACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

88

Amino Acids

8.96

Weight (kDa)

5.55

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007489)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33710 FvH4_2g33890
malus_domestica	MD15G1076000.v1.1
prunus_persica	Prupe.1G429400_v2.0.a1
pyrus_communis	pycom08g07430
rosa_chinensis	RchiOBHm_Chr6g0308511
rosa_laevigata	RLG00000010613 RLG00000010636
rosa_multiflora	Rmu_sc0004046.1_g000010 Rmu_sc0020439.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159870 Rroxscaffold_7G00160060
rosa_rugosa	Rorug06G0367400 Rorug06G0367500 Rorug06G0367500 Rorug06G0368600
rosa_samantha	Rh6AG477300 Rh6AG480100 Rh6BG487600 Rh6BG489600 Rh6CG492600 Rh6DG478800 Rh6DG480400
rosa_wichuraiana	Rw6G041650 Rw6G041850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	249
AciI	CCGC	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	219
AflII	CTTAAG	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	238
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Alw21I	GWGCWC	1 cut(s)	29
AspA2I	CCTAGG	1 cut(s)	214
AspS9I	GGNCC	4 cut(s)	167, 236, 242, 251
AsuC2I	CCSGG	1 cut(s)	255
AvaII	GGWCC	4 cut(s)	167, 236, 242, 251
AvrII	CCTAGG	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	29
BccI	CCATC	2 cut(s)	112, 128
BciT130I	CCWGG	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	255
BfaI	CTAG	2 cut(s)	215, 246
BfrI	CTTAAG	1 cut(s)	92
BlnI	CCTAGG	1 cut(s)	214
Bme1390I	CCNGG	2 cut(s)	240, 255
Bme18I	GGWCC	4 cut(s)	167, 236, 242, 251
BmgT120I	GGNCC	4 cut(s)	167, 236, 242, 251
BmrFI	CCNGG	2 cut(s)	240, 255
BpuMI	CCSGG	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	29
BspACI	CCGC	1 cut(s)	249
BspCNI	CTCAG	1 cut(s)	193
BspTI	CTTAAG	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	240
BstAFI	CTTAAG	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	201
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	2 cut(s)	238, 253
BtsIMutI	CAGTG	2 cut(s)	198, 259
Cfr13I	GGNCC	4 cut(s)	167, 236, 242, 251
CpoI	CGGWCCG	1 cut(s)	251
CseI	GACGC	1 cut(s)	185
CspI	CGGWCCG	1 cut(s)	251
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	3 cut(s)	20, 57, 83
CviKI_1	RGCY	3 cut(s)	20, 57, 83
DdeI	CTNAG	1 cut(s)	201
DrdI	GACNNNNNNGTC	1 cut(s)	249
DseDI	GACNNNNNNGTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	214
Eco47I	GGWCC	4 cut(s)	167, 236, 242, 251
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	1 cut(s)	194
FaiI	YATR	4 cut(s)	74, 107, 144, 192
FatI	CATG	1 cut(s)	190
FspBI	CTAG	2 cut(s)	215, 246
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	1 cut(s)	194
HinfI	GANTC	2 cut(s)	203, 230
HpaII	CCGG	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	2 cut(s)	171, 208
Hpy8I	GTNNAC	1 cut(s)	198
Hpy99I	CGWCG	2 cut(s)	53, 179
HpyAV	CCTTC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	194
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	4 cut(s)	165, 219, 225, 252
MaeI	CTAG	2 cut(s)	215, 246
MboII	GAAGA	2 cut(s)	35, 169
MhlI	GDGCHC	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	2 cut(s)	57, 186
MnlI	CCTC	4 cut(s)	40, 73, 99, 212
MseI	TTAA	1 cut(s)	93
MspCI	CTTAAG	1 cut(s)	92
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	2 cut(s)	240, 255
MvaI	CCWGG	1 cut(s)	240
NciI	CCSGG	1 cut(s)	255
NlaIII	CATG	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	230
PfoI	TCCNGGA	2 cut(s)	238, 253
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspPI	GGNCC	4 cut(s)	167, 236, 242, 251
Rsr2I	CGGWCCG	1 cut(s)	251
RsrII	CGGWCCG	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	93
Sau96I	GGNCC	4 cut(s)	167, 236, 242, 251
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	240, 255
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	3 cut(s)	59, 169, 247
SinI	GGWCC	4 cut(s)	167, 236, 242, 251
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	2 cut(s)	215, 246
StyD4I	CCNGG	2 cut(s)	238, 253
StyI	CCWWGG	1 cut(s)	214
TaqI	TCGA	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	170, 177
TspRI	CASTG	1 cut(s)	205
Vha464I	CTTAAG	1 cut(s)	92
VpaK11BI	GGWCC	4 cut(s)	167, 236, 242, 251
XmaJI	CCTAGG	1 cut(s)	214
XspI	CTAG	2 cut(s)	215, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.