Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007489

Physical Location & Seq

Genomic Coordinates Reverse (-)

3098707 .. 3100540

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGACCGATTACGTCCCCTCCGGCAATTTCATCATTCAAAGTTCAAAGTTCAAATCAGCCTCGTGCTTGAAGAAGCGAGCTCGCCAGCCATGCAGTTTCCCCCTGTTTCTCCAGCTAGGCCACTCAGTCAAATATACGAATCTCACATTCACATTCCCACAAAGCACCAGTACGACGAACTGTAGTAGTATATATAGGGCACAAATTTATACCATCTTACACAGCTCAAATTCTTCTGCGTGCAAACAACAGTACTTGCTTACTTCTGATTACCTTGATCAAAGCATTCACTCACGACATATAGTCCAGATGGCCAACAGTTCCAAGCTTCTCTGCTCCTTGTTTGTTCTTGTTCTTGTAATTAACTCTAGTTGGGTTCTGATGGTATCAGAAGCTCGTCCTCTGAGAATTGGTAGTGGTTTGTTTGTCATTGATGGGTTGTACATTGAAGCAATGAAGGCTGGTGGAGGTCCAACTCCAGGTGGAAAAGGTCATGCCTTCAGCAGTTCTCAAATTCTTGGAGGAATCAAAAATGGAGGTCCAAGCTTGGGAGGGAAAGGTCATGGCTTCACCGATTCTCAAATTCTTGGAGGTAACAAGAATGAAGGTCCAAGCTCAAGTGGAAAGGGTCATGCCTTCACTACTTCTCAAACTCTTGGAGGGATCAAAAATGAAGGAGGTCCAAGTGCTGGTGGAAAAGGTCATGGCTTCACCGATTCTCAAATTCTTGGGCGTATCAAAAATGAAGGTCCAAGCTCAAGTGGAAAGGGTCATGCCTTCACTACTTCTCAAACTCTTGGAGGGATAAAAAATGAAGGAGGTCCAAGTCCAGGTGGAAAAGGTCATGGCTTCACCGATTCTCAAATTCTTGGAGGTATCAAAAATGAAGGTCCAAGCTCAAGTGGAAAGGGTCATGCCTTAACTACTTCTCAGACTCTTGGAGGGATCAAAAATGGAGGAGGTCCAAGTCCAGGTGGAAAAGGTCATGGCTTTACGGATTCTCAGATTCTTGGAGGTATCAAAAATGGAGGTCCAAGTCCAGGTGGAAAAGGTCATGGCTTCACCGATTCTCAAACTCTTGGAGGGATCAAAAATGGAGGTCCAAGCTCTGGTGGCAAGGGTCATGCTTTCACCAATTCTCCTACTCTTGGAGGGATTAAAAATGGAGGTCCAAGTTCAGGTGGGAAAGGTCATGCCTTCACTAGTTCTTATCCTACCCTAGGACTTGGAGGGATCAAAGATTCTGGTCCAAGCCATGGAGGCAGTGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

424

Amino Acids

42.74

Weight (kDa)

9.8

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007489)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33710 FvH4_2g33890
malus_domestica	MD15G1076000.v1.1
prunus_persica	Prupe.1G429400_v2.0.a1
pyrus_communis	pycom08g07430
rosa_chinensis	RchiOBHm_Chr6g0308511
rosa_laevigata	RLG00000010613 RLG00000010636
rosa_multiflora	Rmu_sc0004046.1_g000010 Rmu_sc0020439.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159870 Rroxscaffold_7G00160060
rosa_rugosa	Rorug06G0367400 Rorug06G0367500 Rorug06G0367500 Rorug06G0368600
rosa_samantha	Rh6AG477300 Rh6AG480100 Rh6BG487600 Rh6BG489600 Rh6CG492600 Rh6DG478800 Rh6DG480400
rosa_wichuraiana	Rw6G041650 Rw6G041850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	689, 1109, 1256
AclWI	GGATC	4 cut(s)	671, 953, 1094, 1241
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	6 cut(s)	204, 229, 513, 582, 723, 864
AcuI	CTGAAG	1 cut(s)	484
AfaI	GTAC	3 cut(s)	172, 254, 443
AgsI	TTSAA	5 cut(s)	38, 45, 52, 70, 449
AhdI	GACNNNNNGTC	1 cut(s)	302
AhlI	ACTAGT	1 cut(s)	1202
AjnI	CCWGG	4 cut(s)	478, 829, 970, 1039
Alw21I	GWGCWC	1 cut(s)	82
AlwI	GGATC	4 cut(s)	671, 953, 1094, 1241
AoxI	GGCC	2 cut(s)	118, 312
ApoI	RAATTY	6 cut(s)	204, 229, 513, 582, 723, 864
AspA2I	CCTAGG	1 cut(s)	1219
AsuHPI	GGTGA	5 cut(s)	562, 703, 844, 1054, 1123
AvrII	CCTAGG	1 cut(s)	1219
BaeGI	GKGCMC	1 cut(s)	202
BalI	TGGCCA	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	82
BauI	CACGAG	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	82
BccI	CCATC	4 cut(s)	221, 304, 376, 428
BciT130I	CCWGG	4 cut(s)	480, 831, 972, 1041
BclI	TGATCA	1 cut(s)	277
BcuI	ACTAGT	1 cut(s)	1202
BfaI	CTAG	4 cut(s)	116, 369, 1203, 1220
BfmI	CTRYAG	1 cut(s)	181
BglI	GCCNNNNNGGC	1 cut(s)	1260
BlnI	CCTAGG	1 cut(s)	1219
BmcAI	AGTACT	1 cut(s)	254
Bme1390I	CCNGG	4 cut(s)	480, 831, 972, 1041
BmeRI	GACNNNNNGTC	1 cut(s)	302
BmrFI	CCNGG	4 cut(s)	480, 831, 972, 1041
BpmI	CTGGAG	2 cut(s)	95, 462
BpuEI	CTTGAG	3 cut(s)	601, 742, 883
BsaJI	CCNNGG	2 cut(s)	1219, 1255
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 1123, 1153
Bse1I	ACTGG	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	459
BseBI	CCWGG	4 cut(s)	480, 831, 972, 1041
BseDI	CCNNGG	2 cut(s)	1219, 1255
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	4 cut(s)	138, 395, 944, 1016
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	972
BseSI	GKGCMC	1 cut(s)	202
BshFI	GGCC	2 cut(s)	120, 314
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	2 cut(s)	120, 314
Bsp1286I	GDGCHC	2 cut(s)	82, 202
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	5 cut(s)	277, 663, 945, 1086, 1233
Bsp19I	CCATGG	1 cut(s)	1255
BspANI	GGCC	2 cut(s)	120, 314
BspCNI	CTCAG	4 cut(s)	137, 396, 943, 1015
BspPI	GGATC	4 cut(s)	671, 953, 1094, 1241
BsrDI	GCAATG	1 cut(s)	459
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	1219, 1255
BssMI	GATC	5 cut(s)	277, 663, 945, 1086, 1233
BssSI	CACGAG	1 cut(s)	61
BssT1I	CCWWGG	2 cut(s)	1219, 1255
Bst2BI	CACGAG	1 cut(s)	61
Bst2UI	CCWGG	4 cut(s)	480, 831, 972, 1041
Bst4CI	ACNGT	3 cut(s)	182, 252, 320
BstAUI	TGTACA	1 cut(s)	441
BstC8I	GCNNGC	4 cut(s)	78, 82, 86, 241
BstDEI	CTNAG	4 cut(s)	124, 404, 930, 1002
BstDSI	CCRYGG	1 cut(s)	1255
BstENI	CCTNNNNNAGG	1 cut(s)	1218
BstKTI	GATC	5 cut(s)	280, 666, 948, 1089, 1236
BstMBI	GATC	5 cut(s)	277, 663, 945, 1086, 1233
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 458, 1113, 1260
BstNI	CCWGG	4 cut(s)	480, 831, 972, 1041
BstSCI	CCNGG	4 cut(s)	478, 829, 970, 1039
BstSFI	CTRYAG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	120, 314
BtgI	CCRYGG	1 cut(s)	1255
BtsI	GCAGTG	1 cut(s)	1270
BtsIMutI	CAGTG	1 cut(s)	1270
Cac8I	GCNNGC	4 cut(s)	78, 82, 86, 241
Csp6I	GTAC	3 cut(s)	171, 253, 442
CviQI	GTAC	3 cut(s)	171, 253, 442
DdeI	CTNAG	4 cut(s)	124, 404, 930, 1002
DpnI	GATC	5 cut(s)	279, 665, 947, 1088, 1235
DpnII	GATC	5 cut(s)	277, 663, 945, 1086, 1233
DriI	GACNNNNNGTC	1 cut(s)	302
EaeI	YGGCCR	1 cut(s)	312
Eam1105I	GACNNNNNGTC	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	1219, 1255
Eco24I	GRGCYC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	484
EcoICRI	GAGCTC	1 cut(s)	80
EcoNI	CCTNNNNNAGG	1 cut(s)	1218
EcoRII	CCWGG	4 cut(s)	478, 829, 970, 1039
EcoT14I	CCWWGG	2 cut(s)	1219, 1255
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	2 cut(s)	1219, 1255
FbaI	TGATCA	1 cut(s)	277
FriOI	GRGCYC	1 cut(s)	82
FspBI	CTAG	4 cut(s)	116, 369, 1203, 1220
GsuI	CTGGAG	2 cut(s)	95, 462
HaeIII	GGCC	2 cut(s)	120, 314
HapII	CCGG	1 cut(s)	21
HindIII	AAGCTT	2 cut(s)	326, 544
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	5 cut(s)	562, 703, 844, 1054, 1123
Hpy188I	TCNGA	6 cut(s)	268, 381, 391, 405, 933, 1005
Hpy188III	TCNNGA	2 cut(s)	294, 307
Hpy99I	CGWCG	1 cut(s)	178
HpyCH4III	ACNGT	3 cut(s)	182, 252, 320
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	2 cut(s)	93, 243
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 458, 1113, 1260
HpyF3I	CTNAG	4 cut(s)	124, 404, 930, 1002
HpySE526I	ACGT	1 cut(s)	12
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	277, 663, 945, 1086, 1233
LmnI	GCTCC	1 cut(s)	341
MaeI	CTAG	4 cut(s)	116, 369, 1203, 1220
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	5 cut(s)	279, 665, 947, 1088, 1235
MboI	GATC	5 cut(s)	277, 663, 945, 1086, 1233
MboII	GAAGA	2 cut(s)	82, 225
MhlI	GDGCHC	2 cut(s)	82, 202
MlsI	TGGCCA	1 cut(s)	314
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	1 cut(s)	928
MmeI	TCCRAC	1 cut(s)	497
Mox20I	TGGCCA	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	3 cut(s)	363, 920, 1158
Msp20I	TGGCCA	1 cut(s)	314
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	4 cut(s)	480, 831, 972, 1041
Mva1269I	GAATGC	1 cut(s)	285
MvaI	CCWGG	4 cut(s)	480, 831, 972, 1041
MwoI	GCNNNNNNNGC	4 cut(s)	90, 458, 1113, 1260
NcoI	CCATGG	1 cut(s)	1255
NdeII	GATC	5 cut(s)	277, 663, 945, 1086, 1233
PctI	GAATGC	1 cut(s)	285
PfeI	GAWTC	9 cut(s)	139, 525, 575, 716, 857, 998, 1006, 1067, 1241
PflMI	CCANNNNNTGG	3 cut(s)	689, 1109, 1256
PleI	GAGTC	1 cut(s)	928
PpsI	GAGTC	1 cut(s)	928
Psp124BI	GAGCTC	1 cut(s)	82
Psp6I	CCWGG	4 cut(s)	478, 829, 970, 1039
PspGI	CCWGG	4 cut(s)	478, 829, 970, 1039
RsaI	GTAC	3 cut(s)	172, 254, 443
RsaNI	GTAC	3 cut(s)	171, 253, 442
SacI	GAGCTC	1 cut(s)	82
SaqAI	TTAA	3 cut(s)	363, 920, 1158
Sau3AI	GATC	5 cut(s)	277, 663, 945, 1086, 1233
ScaI	AGTACT	1 cut(s)	254
SchI	GAGTC	1 cut(s)	928
ScrFI	CCNGG	4 cut(s)	480, 831, 972, 1041
SduI	GDGCHC	2 cut(s)	82, 202
SfcI	CTRYAG	1 cut(s)	181
SmlI	CTYRAG	3 cut(s)	616, 757, 898
SmoI	CTYRAG	3 cut(s)	616, 757, 898
SpeI	ACTAGT	1 cut(s)	1202
SspMI	CTAG	4 cut(s)	116, 369, 1203, 1220
SstI	GAGCTC	1 cut(s)	82
StyD4I	CCNGG	4 cut(s)	478, 829, 970, 1039
StyI	CCWWGG	2 cut(s)	1219, 1255
TaaI	ACNGT	3 cut(s)	182, 252, 320
TaiI	ACGT	1 cut(s)	15
TaqII	GACCGA	1 cut(s)	20
TatI	WGTACW	2 cut(s)	252, 441
TfiI	GAWTC	9 cut(s)	139, 525, 575, 716, 857, 998, 1006, 1067, 1241
Tru1I	TTAA	3 cut(s)	363, 920, 1158
Tru9I	TTAA	3 cut(s)	363, 920, 1158
TscAI	CASTG	1 cut(s)	1270
TspDTI	ATGAA	7 cut(s)	19, 470, 618, 687, 759, 828, 900
TspGWI	ACGGA	1 cut(s)	1010
TspRI	CASTG	1 cut(s)	1270
Van91I	CCANNNNNTGG	3 cut(s)	689, 1109, 1256
XagI	CCTNNNNNAGG	1 cut(s)	1218
XapI	RAATTY	6 cut(s)	204, 229, 513, 582, 723, 864
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1262
XmaJI	CCTAGG	1 cut(s)	1219
XspI	CTAG	4 cut(s)	116, 369, 1203, 1220
ZrmI	AGTACT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.