Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007489

Physical Location & Seq

Genomic Coordinates Forward (+)

65299956 .. 65300639

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G041650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCCAACAGTTCCAAGCTTCTCTTCTCCTTGTTTGTTCTTGTTCTTGTAATTACCTCTAGTTGGGTTCTGATGGTATCAGAAGCACGTCCTCTGAGAATTGGTAGTGGTTTGTTTGTTATTGATGGGTTGAACATTGAAGCAATGAAGGCTGGTGGAGGTCCAAGTCCTGGTGGAAAAGGTCATTCCTTCAGCAGTTCTCAAATTCTTGGAGGAATCAAAAATGGAGGTCCAAGCTCAGGAGGGAAAGGTCATGGCTTCACAGATTCTCAAATTCTTGGAGGTATCAAAAATGAAGGTCCAAGCTCAAGTGGAAAGGGTCATGCCTTCACTACTTCTCAGACTCTTGGAGGGATAAAAAATGGAGGAGGTCCAAGTCCAGGTGGAAAGGGTCATGCCTTCACTACTTCTCAGACTCTTGGAGGGATCAAAAATGGAGGTCCAAGCTCTGGTGGAAAGGGTCATGCTTTCACCAATTCTCCTACTCTTGGAGGGATTAAAAATGGAGGTCCAAGCTCTGGTGGAAAGGGTCATGCTTTCACCAATTCTCCTACTCTTGGAGGGATTAAAAATGGAGGTCCAAGTCCAGGTGGGAAAGGTCATGCCTTCACTAGTTCGTATCCTACTCTAGGACTTGGAGGGATCAAAGATTCTGGTCCAAGCCATGGAGGCAGTGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

21.88

Weight (kDa)

10.26

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007489)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33710 FvH4_2g33890
malus_domestica	MD15G1076000.v1.1
prunus_persica	Prupe.1G429400_v2.0.a1
pyrus_communis	pycom08g07430
rosa_chinensis	RchiOBHm_Chr6g0308511
rosa_laevigata	RLG00000010613 RLG00000010636
rosa_multiflora	Rmu_sc0004046.1_g000010 Rmu_sc0020439.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159870 Rroxscaffold_7G00160060
rosa_rugosa	Rorug06G0367400 Rorug06G0367500 Rorug06G0367500 Rorug06G0368600
rosa_samantha	Rh6AG477300 Rh6AG480100 Rh6BG487600 Rh6BG489600 Rh6CG492600 Rh6DG478800 Rh6DG480400
rosa_wichuraiana	Rw6G041650 Rw6G041850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	4 cut(s)	170, 449, 518, 665
AclWI	GGATC	2 cut(s)	434, 650
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	204, 273
AcuI	CTGAAG	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	133, 140
AhlI	ACTAGT	1 cut(s)	611
AjiI	CACGTC	1 cut(s)	89
AjnI	CCWGG	3 cut(s)	169, 379, 586
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	5 cut(s)	19, 237, 306, 447, 516
AluI	AGCT	5 cut(s)	19, 237, 306, 447, 516
AlwI	GGATC	2 cut(s)	434, 650
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	204, 273
AspS9I	GGNCC	8 cut(s)	161, 230, 299, 371, 440, 509, 578, 656
AsuHPI	GGTGA	2 cut(s)	463, 532
AvaII	GGWCC	8 cut(s)	161, 230, 299, 371, 440, 509, 578, 656
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	2 cut(s)	67, 119
BciT130I	CCWGG	3 cut(s)	171, 381, 588
BciVI	GTATCC	1 cut(s)	630
BcuI	ACTAGT	1 cut(s)	611
BfaI	CTAG	3 cut(s)	60, 612, 629
BfuI	GTATCC	1 cut(s)	630
BglI	GCCNNNNNGGC	1 cut(s)	669
Bme1390I	CCNGG	3 cut(s)	171, 381, 588
Bme18I	GGWCC	8 cut(s)	161, 230, 299, 371, 440, 509, 578, 656
BmgBI	CACGTC	1 cut(s)	89
BmgT120I	GGNCC	8 cut(s)	161, 230, 299, 371, 440, 509, 578, 656
BmrFI	CCNGG	3 cut(s)	171, 381, 588
Bpu10I	CCTNAGC	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	664
BsaXI	ACNNNNNCTCC	4 cut(s)	463, 493, 532, 562
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	3 cut(s)	171, 381, 588
BseDI	CCNNGG	1 cut(s)	664
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	4 cut(s)	86, 252, 353, 425
BseRI	GAGGAG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	426, 642
Bsp19I	CCATGG	1 cut(s)	664
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	87, 251, 352, 424
BspPI	GGATC	2 cut(s)	434, 650
BsrDI	GCAATG	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	664
BssMI	GATC	2 cut(s)	426, 642
BssT1I	CCWWGG	1 cut(s)	664
Bst2UI	CCWGG	3 cut(s)	171, 381, 588
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	29
BstDEI	CTNAG	4 cut(s)	95, 238, 339, 411
BstDSI	CCRYGG	1 cut(s)	664
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstKTI	GATC	2 cut(s)	429, 645
BstMBI	GATC	2 cut(s)	426, 642
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 669
BstNI	CCWGG	3 cut(s)	171, 381, 588
BstSCI	CCNGG	3 cut(s)	169, 379, 586
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	664
BtrI	CACGTC	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	679
Cfr13I	GGNCC	8 cut(s)	161, 230, 299, 371, 440, 509, 578, 656
CviAII	CATG	7 cut(s)	254, 323, 395, 464, 533, 602, 665
CviJI	RGCY	9 cut(s)	5, 19, 152, 237, 258, 306, 447, 516, 663
CviKI_1	RGCY	9 cut(s)	5, 19, 152, 237, 258, 306, 447, 516, 663
DdeI	CTNAG	4 cut(s)	95, 238, 339, 411
DpnI	GATC	2 cut(s)	428, 644
DpnII	GATC	2 cut(s)	426, 642
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	664
Eco47I	GGWCC	8 cut(s)	161, 230, 299, 371, 440, 509, 578, 656
Eco57I	CTGAAG	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoRII	CCWGG	3 cut(s)	169, 379, 586
EcoT14I	CCWWGG	1 cut(s)	664
ErhI	CCWWGG	1 cut(s)	664
FaeI	CATG	7 cut(s)	257, 326, 398, 467, 536, 605, 668
FaiI	YATR	7 cut(s)	255, 324, 396, 465, 534, 603, 666
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	7 cut(s)	253, 322, 394, 463, 532, 601, 664
FspBI	CTAG	3 cut(s)	60, 612, 629
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	257, 326, 398, 467, 536, 605, 668
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	5 cut(s)	216, 266, 343, 415, 650
HphI	GGTGA	2 cut(s)	463, 532
Hpy188I	TCNGA	5 cut(s)	72, 82, 96, 342, 414
Hpy188III	TCNNGA	1 cut(s)	240
HpyAV	CCTTC	6 cut(s)	142, 199, 290, 337, 409, 616
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 669
HpyF3I	CTNAG	4 cut(s)	95, 238, 339, 411
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	7 cut(s)	257, 326, 398, 467, 536, 605, 668
Kzo9I	GATC	2 cut(s)	426, 642
MaeI	CTAG	3 cut(s)	60, 612, 629
MaeII	ACGT	1 cut(s)	88
MalI	GATC	2 cut(s)	428, 644
MboI	GATC	2 cut(s)	426, 642
MboII	GAAGA	1 cut(s)	16
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	51, 99, 204, 273, 475, 544
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	337, 409
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	498, 567
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	3 cut(s)	171, 381, 588
MvaI	CCWGG	3 cut(s)	171, 381, 588
MwoI	GCNNNNNNNGC	2 cut(s)	149, 669
NcoI	CCATGG	1 cut(s)	664
NdeII	GATC	2 cut(s)	426, 642
NlaIII	CATG	7 cut(s)	257, 326, 398, 467, 536, 605, 668
PfeI	GAWTC	3 cut(s)	216, 266, 650
PflMI	CCANNNNNTGG	4 cut(s)	170, 449, 518, 665
PleI	GAGTC	2 cut(s)	337, 409
PpsI	GAGTC	2 cut(s)	337, 409
Psp6I	CCWGG	3 cut(s)	169, 379, 586
PspGI	CCWGG	3 cut(s)	169, 379, 586
PspPI	GGNCC	8 cut(s)	161, 230, 299, 371, 440, 509, 578, 656
SaqAI	TTAA	2 cut(s)	498, 567
Sau3AI	GATC	2 cut(s)	426, 642
Sau96I	GGNCC	8 cut(s)	161, 230, 299, 371, 440, 509, 578, 656
SchI	GAGTC	2 cut(s)	337, 409
ScrFI	CCNGG	3 cut(s)	171, 381, 588
SinI	GGWCC	8 cut(s)	161, 230, 299, 371, 440, 509, 578, 656
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SpeI	ACTAGT	1 cut(s)	611
Sse9I	AATT	6 cut(s)	51, 99, 204, 273, 475, 544
SspMI	CTAG	3 cut(s)	60, 612, 629
StyD4I	CCNGG	3 cut(s)	169, 379, 586
StyI	CCWWGG	1 cut(s)	664
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	91
TasI	AATT	6 cut(s)	51, 99, 204, 273, 475, 544
TfiI	GAWTC	3 cut(s)	216, 266, 650
Tru1I	TTAA	2 cut(s)	498, 567
Tru9I	TTAA	2 cut(s)	498, 567
TscAI	CASTG	1 cut(s)	679
TspDTI	ATGAA	2 cut(s)	161, 309
TspRI	CASTG	1 cut(s)	679
Van91I	CCANNNNNTGG	4 cut(s)	170, 449, 518, 665
VpaK11BI	GGWCC	8 cut(s)	161, 230, 299, 371, 440, 509, 578, 656
XagI	CCTNNNNNAGG	1 cut(s)	627
XapI	RAATTY	2 cut(s)	204, 273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	671
XspI	CTAG	3 cut(s)	60, 612, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.