Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007489

Physical Location & Seq

Genomic Coordinates Reverse (-)

25301574 .. 25302164

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g33890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCCAAATGTTACCAGCCTCTCTGCTCCTTGTTTGTTCTTGTTCTTGTCATAGTATCAGAAGCTCGTCCTCTGAGAATTGGTAGTGGTTTGTTTGATATTGGTGGGTTTTACATTGAAGAAATGAAGGCTGGTGGAGGCCCGAGTTCAGGTGGAAAGGGTCATGGCTTCACCGATTCTCAAATACTTGGAGGTATGAAAAATGAAGGTCCAAGCTCAAGTGGAAAGGGTCATGCCTTCACCACTTCTCAGATTCTTGGAGGGATAAAAAATGGAGGTCCGAGTCCTGGTGGGAAAGGTCATGCCTTCACTACTTCTCAAACTTTTGGAGGTATCAAAAATGGAGGTCCAAGCTCAGGTGGAAAAGGGCATGGCTTCACCGATTCTCAGACTCTTGGAGGGATCAAAAATGGAGGTCCAAGCTCAGGTGGAAAGGGTCATGCTTTCACCAATTCTCCTACTCTTGGAGGGATTAAAAGTGGGGGTCCAAGTCCAGGTGGGAAAGGACATGCCTTCACTAGTTCTTATCCTGCTCTAGGACTTGGAGGGATCAAAGATTCTGGTCCAAGCCATGGAGGCAGTGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

19.03

Weight (kDa)

9.66

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007489)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33710 FvH4_2g33890
malus_domestica	MD15G1076000.v1.1
prunus_persica	Prupe.1G429400_v2.0.a1
pyrus_communis	pycom08g07430
rosa_chinensis	RchiOBHm_Chr6g0308511
rosa_laevigata	RLG00000010613 RLG00000010636
rosa_multiflora	Rmu_sc0004046.1_g000010 Rmu_sc0020439.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159870 Rroxscaffold_7G00160060
rosa_rugosa	Rorug06G0367400 Rorug06G0367500 Rorug06G0367500 Rorug06G0368600
rosa_samantha	Rh6AG477300 Rh6AG480100 Rh6BG487600 Rh6BG489600 Rh6CG492600 Rh6DG478800 Rh6DG480400
rosa_wichuraiana	Rw6G041650 Rw6G041850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	572
AclWI	GGATC	2 cut(s)	410, 557
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	8 cut(s)	149, 287, 356, 425, 464, 494, 536, 572
AgsI	TTSAA	1 cut(s)	119
AhlI	ACTAGT	1 cut(s)	518
AjnI	CCWGG	2 cut(s)	286, 493
AluBI	AGCT	4 cut(s)	65, 216, 354, 423
AluI	AGCT	4 cut(s)	65, 216, 354, 423
AlwI	GGATC	2 cut(s)	410, 557
Ama87I	CYCGRG	1 cut(s)	142
AoxI	GGCC	2 cut(s)	3, 139
AspS9I	GGNCC	7 cut(s)	140, 209, 278, 347, 416, 485, 563
AsuHPI	GGTGA	4 cut(s)	163, 232, 370, 439
AvaI	CYCGRG	1 cut(s)	142
AvaII	GGWCC	6 cut(s)	209, 278, 347, 416, 485, 563
BalI	TGGCCA	1 cut(s)	5
BciT130I	CCWGG	2 cut(s)	288, 495
BcuI	ACTAGT	1 cut(s)	518
BfaI	CTAG	2 cut(s)	519, 536
BglI	GCCNNNNNGGC	1 cut(s)	576
Bme1390I	CCNGG	2 cut(s)	288, 495
Bme18I	GGWCC	6 cut(s)	209, 278, 347, 416, 485, 563
BmeT110I	CYCGRG	1 cut(s)	142
BmgT120I	GGNCC	7 cut(s)	140, 209, 278, 347, 416, 485, 563
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	2 cut(s)	288, 495
Bpu10I	CCTNAGC	2 cut(s)	355, 424
BpuEI	CTTGAG	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	571
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	8 cut(s)	149, 287, 356, 425, 464, 494, 536, 572
BseBI	CCWGG	2 cut(s)	288, 495
BseDI	CCNNGG	1 cut(s)	571
BseLI	CCNNNNNNNGG	8 cut(s)	149, 287, 356, 425, 464, 494, 536, 572
BseMII	CTCAG	5 cut(s)	65, 263, 369, 401, 438
BshFI	GGCC	2 cut(s)	5, 141
BsiHKCI	CYCGRG	1 cut(s)	142
BslI	CCNNNNNNNGG	8 cut(s)	149, 287, 356, 425, 464, 494, 536, 572
BsnI	GGCC	2 cut(s)	5, 141
BsoBI	CYCGRG	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	402, 549
Bsp19I	CCATGG	1 cut(s)	571
BspANI	GGCC	2 cut(s)	5, 141
BspCNI	CTCAG	5 cut(s)	66, 262, 368, 400, 437
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	410, 557
BssECI	CCNNGG	1 cut(s)	571
BssMI	GATC	2 cut(s)	402, 549
BssT1I	CCWWGG	1 cut(s)	571
Bst2UI	CCWGG	2 cut(s)	288, 495
BstDEI	CTNAG	5 cut(s)	74, 249, 355, 387, 424
BstDSI	CCRYGG	1 cut(s)	571
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstKTI	GATC	2 cut(s)	405, 552
BstMBI	GATC	2 cut(s)	402, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	576
BstNI	CCWGG	2 cut(s)	288, 495
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	2 cut(s)	286, 493
BsuRI	GGCC	2 cut(s)	5, 141
BtgI	CCRYGG	1 cut(s)	571
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	1 cut(s)	586
Cfr13I	GGNCC	7 cut(s)	140, 209, 278, 347, 416, 485, 563
CviAII	CATG	7 cut(s)	164, 233, 302, 371, 440, 509, 572
DdeI	CTNAG	5 cut(s)	74, 249, 355, 387, 424
DpnI	GATC	2 cut(s)	404, 551
DpnII	GATC	2 cut(s)	402, 549
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	571
Eco47I	GGWCC	6 cut(s)	209, 278, 347, 416, 485, 563
Eco88I	CYCGRG	1 cut(s)	142
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoRII	CCWGG	2 cut(s)	286, 493
EcoT14I	CCWWGG	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	571
FaeI	CATG	7 cut(s)	167, 236, 305, 374, 443, 512, 575
FaiI	YATR	9 cut(s)	53, 165, 197, 234, 303, 372, 441, 510, 573
FatI	CATG	7 cut(s)	163, 232, 301, 370, 439, 508, 571
FspBI	CTAG	2 cut(s)	519, 536
HaeIII	GGCC	2 cut(s)	5, 141
Hin1II	CATG	7 cut(s)	167, 236, 305, 374, 443, 512, 575
HinfI	GANTC	6 cut(s)	176, 253, 283, 383, 391, 557
HphI	GGTGA	4 cut(s)	163, 232, 370, 439
Hpy188I	TCNGA	5 cut(s)	61, 75, 252, 282, 390
HpyAV	CCTTC	5 cut(s)	121, 200, 247, 316, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	576
HpyF3I	CTNAG	5 cut(s)	74, 249, 355, 387, 424
Hsp92II	CATG	7 cut(s)	167, 236, 305, 374, 443, 512, 575
Kzo9I	GATC	2 cut(s)	402, 549
LmnI	GCTCC	1 cut(s)	32
MaeI	CTAG	2 cut(s)	519, 536
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	2 cut(s)	404, 551
MboI	GATC	2 cut(s)	402, 549
MboII	GAAGA	1 cut(s)	131
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	78, 451
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	292, 385
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	474
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	288, 495
MvaI	CCWGG	2 cut(s)	288, 495
MwoI	GCNNNNNNNGC	1 cut(s)	576
NcoI	CCATGG	1 cut(s)	571
NdeII	GATC	2 cut(s)	402, 549
NlaIII	CATG	7 cut(s)	167, 236, 305, 374, 443, 512, 575
NlaIV	GGNNCC	1 cut(s)	486
NspI	RCATGY	1 cut(s)	512
PfeI	GAWTC	4 cut(s)	176, 253, 383, 557
PflMI	CCANNNNNTGG	1 cut(s)	572
PleI	GAGTC	2 cut(s)	291, 385
PpsI	GAGTC	2 cut(s)	291, 385
Psp6I	CCWGG	2 cut(s)	286, 493
PspGI	CCWGG	2 cut(s)	286, 493
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	7 cut(s)	140, 209, 278, 347, 416, 485, 563
SaqAI	TTAA	1 cut(s)	474
Sau3AI	GATC	2 cut(s)	402, 549
Sau96I	GGNCC	7 cut(s)	140, 209, 278, 347, 416, 485, 563
SchI	GAGTC	2 cut(s)	292, 385
ScrFI	CCNGG	2 cut(s)	288, 495
SinI	GGWCC	6 cut(s)	209, 278, 347, 416, 485, 563
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
SpeI	ACTAGT	1 cut(s)	518
Sse9I	AATT	2 cut(s)	78, 451
SspMI	CTAG	2 cut(s)	519, 536
StyD4I	CCNGG	2 cut(s)	286, 493
StyI	CCWWGG	1 cut(s)	571
TasI	AATT	2 cut(s)	78, 451
TfiI	GAWTC	4 cut(s)	176, 253, 383, 557
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	1 cut(s)	586
TspDTI	ATGAA	3 cut(s)	140, 212, 219
TspRI	CASTG	1 cut(s)	586
Van91I	CCANNNNNTGG	1 cut(s)	572
VpaK11BI	GGWCC	6 cut(s)	209, 278, 347, 416, 485, 563
XagI	CCTNNNNNAGG	1 cut(s)	534
XceI	RCATGY	1 cut(s)	512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XspI	CTAG	2 cut(s)	519, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.