FvH4_2g33780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013625
Physical Location & Seq
Reverse (-)
25234452 .. 25235479
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33780.t1

Sequence Viewer

Length: 318 bp
ATGGATACTTCAAAAGGAACAACTGAAGGTGTTAACGAGCAAGGTGGAGTGGAGGTCAAGGTGGACACAGTGGATTTCCGATCACCGGCCGGAGATGACAAAGAACCCGTGAAGGAGAAGGTGGAGATACTTCATGAGATCGACGACGGAGGAGCAAATTCTGGAAAGACCGGGGCTGCTGGCTTTGTGGAAAAAGCAGCTACTGCAGTTGCTGATACCTTTAAGTCAGCCAAGGATGCTGTTTCTGGAAAACCCAAGGATGCTGCTGTTGCTGAAAAACCCAAGGAAGCTGTTGCTGAAGATAAGACCACGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

10.81

Weight (kDa)

4.8

Isoelectric Point (pI)

17.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 157
AcuI CTGAAG 2 cut(s) 45, 318
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 1 cut(s) 12
AluBI AGCT 2 cut(s) 200, 290
AluI AGCT 2 cut(s) 200, 290
AlwNI CAGNNNCTG 2 cut(s) 203, 212
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 3 cut(s) 176, 197, 263
ApoI RAATTY 1 cut(s) 157
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 75
BbvI GCAGC 3 cut(s) 163, 209, 250
BcnI CCSGG 1 cut(s) 172
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 3 cut(s) 177, 198, 264
BlsI GCNGC 3 cut(s) 178, 199, 265
Bme1390I CCNGG 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 2 cut(s) 226, 250
BpuMI CCSGG 1 cut(s) 172
BsaJI CCNNGG 4 cut(s) 171, 231, 255, 282
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse118I RCCGGY 1 cut(s) 85
BseDI CCNNGG 4 cut(s) 171, 231, 255, 282
BseGI GGATG 2 cut(s) 241, 265
BseLI CCNNNNNNNGG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 165
BseX3I CGGCCG 1 cut(s) 87
BseXI GCAGC 3 cut(s) 163, 209, 250
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 89
BsiEI CGRYCG 1 cut(s) 90
BsiSI CCGG 3 cut(s) 86, 90, 171
BslI CCNNNNNNNGG 1 cut(s) 85
BsnI GGCC 1 cut(s) 89
Bsp143I GATC 2 cut(s) 80, 138
BspANI GGCC 1 cut(s) 89
BspHI TCATGA 1 cut(s) 133
BspMAI CTGCAG 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 85
BssAI RCCGGY 1 cut(s) 85
BssECI CCNNGG 4 cut(s) 171, 231, 255, 282
BssMI GATC 2 cut(s) 80, 138
BssT1I CCWWGG 3 cut(s) 231, 255, 282
Bst4CI ACNGT 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 181
BstF5I GGATG 2 cut(s) 241, 265
BstKTI GATC 2 cut(s) 83, 141
BstMBI GATC 2 cut(s) 80, 138
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 3 cut(s) 203, 236, 269
BstSCI CCNGG 1 cut(s) 170
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 3 cut(s) 163, 209, 250
BstZI CGGCCG 1 cut(s) 87
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 2 cut(s) 241, 265
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 181
CaiI CAGNNNCTG 2 cut(s) 203, 212
CciI TCATGA 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 85
CviAII CATG 1 cut(s) 134
CviJI RGCY 6 cut(s) 89, 176, 183, 200, 230, 290
CviKI_1 RGCY 6 cut(s) 89, 176, 183, 200, 230, 290
DpnI GATC 2 cut(s) 82, 140
DpnII GATC 2 cut(s) 80, 138
EaeI YGGCCR 1 cut(s) 87
EagI CGGCCG 1 cut(s) 87
EclXI CGGCCG 1 cut(s) 87
Eco130I CCWWGG 3 cut(s) 231, 255, 282
Eco52I CGGCCG 1 cut(s) 87
Eco57I CTGAAG 2 cut(s) 45, 318
EcoT14I CCWWGG 3 cut(s) 231, 255, 282
ErhI CCWWGG 3 cut(s) 231, 255, 282
FaeI CATG 1 cut(s) 137
FaiI YATR 1 cut(s) 135
FatI CATG 1 cut(s) 133
Fnu4HI GCNGC 3 cut(s) 177, 198, 264
FokI GGATG 2 cut(s) 248, 272
Fsp4HI GCNGC 3 cut(s) 177, 198, 264
GluI GCNGC 3 cut(s) 177, 198, 264
HaeIII GGCC 1 cut(s) 89
HapII CCGG 3 cut(s) 86, 90, 171
Hin1II CATG 1 cut(s) 137
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HpaI GTTAAC 1 cut(s) 34
HpaII CCGG 3 cut(s) 86, 90, 171
HphI GGTGA 1 cut(s) 75
Hpy166II GTNNAC 2 cut(s) 34, 64
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 3 cut(s) 134, 162, 246
Hpy8I GTNNAC 2 cut(s) 34, 64
Hpy99I CGWCG 2 cut(s) 146, 149
HpyAV CCTTC 3 cut(s) 20, 106, 112
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 236, 269
Hsp92II CATG 1 cut(s) 137
KspAI GTTAAC 1 cut(s) 34
Kzo9I GATC 2 cut(s) 80, 138
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 6 cut(s) 99, 103, 147, 165, 184, 231
Lsp1109I GCAGC 3 cut(s) 163, 209, 250
LweI GCATC 2 cut(s) 226, 250
MalI GATC 2 cut(s) 82, 140
MboI GATC 2 cut(s) 80, 138
MboII GAAGA 1 cut(s) 311
MluCI AATT 1 cut(s) 157
MnlI CCTC 2 cut(s) 46, 143
MseI TTAA 2 cut(s) 33, 222
MspI CCGG 3 cut(s) 86, 90, 171
MspR9I CCNGG 1 cut(s) 172
MwoI GCNNNNNNNGC 3 cut(s) 203, 236, 269
NciI CCSGG 1 cut(s) 172
NdeII GATC 2 cut(s) 80, 138
NlaIII CATG 1 cut(s) 137
PagI TCATGA 1 cut(s) 133
PkrI GCNGC 3 cut(s) 178, 199, 265
PstI CTGCAG 1 cut(s) 208
PstNI CAGNNNCTG 2 cut(s) 203, 212
SaqAI TTAA 2 cut(s) 33, 222
SatI GCNGC 3 cut(s) 177, 198, 264
Sau3AI GATC 2 cut(s) 80, 138
ScrFI CCNGG 1 cut(s) 172
SetI ASST 8 cut(s) 31, 46, 57, 63, 123, 202, 221, 292
SfaNI GCATC 2 cut(s) 226, 250
SfcI CTRYAG 1 cut(s) 204
Sse9I AATT 1 cut(s) 157
StyD4I CCNGG 1 cut(s) 170
StyI CCWWGG 3 cut(s) 231, 255, 282
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 157
Tru1I TTAA 2 cut(s) 33, 222
Tru9I TTAA 2 cut(s) 33, 222
TscAI CASTG 1 cut(s) 75
TseI GCWGC 3 cut(s) 176, 197, 263
TspDTI ATGAA 1 cut(s) 122
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 1 cut(s) 75
XapI RAATTY 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.