Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013625

Physical Location & Seq

Genomic Coordinates Forward (+)

7698039 .. 7698465

Gene Structure 427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1092300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAATATTTCAAACGGAACTGAAGAAATAAACGAGCAAGGAGCAGTGGAAATCAAGGTGGACACAGTAGATTATCGGTCTCCGGCAGGGGAAGATAAACAGCCCAAGAAGGAGAAGGTTGAGGTGGTTCATGAGATTCGAGATGGTGGAAATAAGGGAGCTGCAGGAGGAGGTAGTGACTTTGTTGATCTTGATGCAACTGCTGCAGTTGCACATACCCTCGAGTCAGCCAAGGATCACCAAATAAGTGAGGCCATTAGATATGGAAAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

9.65

Weight (kDa)

4.82

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013625)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33780
malus_domestica	MD08G1092300.v1.1 MD08G1092400.v1.1 MD15G1076900.v1.1
prunus_persica	Prupe.1G430300_v2.0.a1
pyrus_communis	pycom08g07510
rosa_chinensis	RchiOBHm_Chr6g0308771
rosa_laevigata	RLG00000010620
rosa_multiflora	Rmu_sc0000638.1_g000002 Rmu_sc0000871.1_g000035 Rmu_sc0006892.1_g000001 Rmu_sc0009346.1_g000002 Rmu_sc0019189.1_g000004
rosa_samantha	Rh6AG423100 Rh6CG494300 Rh7AG006600 Rh7AG437900
rosa_wichuraiana	Rw6G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	42
AgsI	TTSAA	1 cut(s)	12
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	243
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	161, 203
AsuHPI	GGTGA	1 cut(s)	230
AvaI	CYCGRG	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	148, 190
BccI	CCATC	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	84
BfmI	CTRYAG	2 cut(s)	162, 204
BisI	GCNGC	2 cut(s)	162, 204
BlsI	GCNGC	2 cut(s)	163, 205
BmeT110I	CYCGRG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	184
BsaI	GGTCTC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	148, 190
BshFI	GGCC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	84
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	187, 235
BspANI	GGCC	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	130
BspMAI	CTGCAG	2 cut(s)	166, 208
BspPI	GGATC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	187, 235
BssT1I	CCWWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	67
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstKTI	GATC	2 cut(s)	190, 238
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	2 cut(s)	187, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 209
BstSFI	CTRYAG	2 cut(s)	162, 204
BstV1I	GCAGC	2 cut(s)	148, 190
BsuRI	GGCC	1 cut(s)	254
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
CciI	TCATGA	1 cut(s)	130
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	4 cut(s)	103, 161, 230, 254
CviKI_1	RGCY	4 cut(s)	103, 161, 230, 254
DpnI	GATC	2 cut(s)	189, 237
DpnII	GATC	2 cut(s)	187, 235
Eco130I	CCWWGG	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	1 cut(s)	134
FaiI	YATR	3 cut(s)	132, 216, 264
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	162, 204
Fsp4HI	GCNGC	2 cut(s)	162, 204
GluI	GCNGC	2 cut(s)	162, 204
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	1 cut(s)	134
HinfI	GANTC	2 cut(s)	136, 224
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188III	TCNNGA	3 cut(s)	131, 140, 191
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	103, 109
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	4 cut(s)	164, 197, 206, 212
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 209
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	187, 235
LmnI	GCTCC	2 cut(s)	41, 158
LpnPI	CCDG	3 cut(s)	72, 96, 150
Lsp1109I	GCAGC	2 cut(s)	148, 190
LweI	GCATC	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	2 cut(s)	189, 237
MboI	GATC	2 cut(s)	187, 235
MboII	GAAGA	2 cut(s)	35, 104
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	5 cut(s)	115, 161, 164, 230, 244
MspI	CCGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	203, 209
NdeII	GATC	2 cut(s)	187, 235
NlaIII	CATG	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	176
PaeR7I	CTCGAG	1 cut(s)	221
PagI	TCATGA	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	163, 205
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PspXI	VCTCGAGB	1 cut(s)	221
PstI	CTGCAG	2 cut(s)	166, 208
SatI	GCNGC	2 cut(s)	162, 204
Sau3AI	GATC	2 cut(s)	187, 235
SchI	GAGTC	1 cut(s)	233
SetI	ASST	5 cut(s)	60, 120, 126, 163, 175
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	2 cut(s)	162, 204
Sfr274I	CTCGAG	1 cut(s)	221
SlaI	CTCGAG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SspI	AATATT	1 cut(s)	7
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	2 cut(s)	139, 222
TaqII	GACCGA	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	136
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	2 cut(s)	161, 203
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	17, 119
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	51
XhoI	CTCGAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.