Rmu_sc0000871.1_g000035

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000871.1
OG0013625
Physical Location & Seq
Forward (+)
133698 .. 135029
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000871.1_g000035.1.cds

Sequence Viewer

Length: 918 bp
atgacaaacgaaagacctctctcgaatcaatcaatccaagcgattacaaagcctcctcgaagcaaaccttcaaccttgttgaaacctggtgaccgcgcgccagtcctagtctctctaagagccgattgtcagtgtcatcagatcaacccggtgaccgtgcttccagtcctagtctctccaagagccgactgccagtgctactgccaccgatactaccagcgaagcaagggcaagaagtcctttctcggaaggctagagaagaaccttgtggcgaggttggtgctcttctcgtccacaacgcttgaagaagaagtcaggtcaagggattcccccgacgactgcaccccaggatgctggcacgcccgcgcacacgctcaaaagagacaatttacacgccaactaattttggagccaaacaacatcctcacaatctcacggcccttttacaaactgaatcccagtgttattgggctttcgagcttttcaaaagaattgtccaggtgtcctttcatctcagcaagttcggtcgacctccaccacgaagtagactatataatatctatgactttctgcacattaacaaccaaagctttgcattattcatccgtgttcttagttcaaatctgcagcatgaatacttcaaaaggaactgaaggtgtaaacgagcaaggtggagtggagaccaaggtggagacagtggatttccgatcaccggctggagaagacaaagaacccgtaaaggagaaggtggaaatacttcatgagatcaatgatggaggagcaaattctggaaataccggggctaccggctttgtgggtaaagcagctattgcagttgcagatacctttcagtcagccaaggatgctgtttctggaaaacccaaggatgctgttgctgaaaacaagaccacgaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

33.48

Weight (kDa)

8.85

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 528, 546
AccII CGCG 3 cut(s) 96, 98, 366
AciI CCGC 2 cut(s) 94, 364
AcsI RAATTY 1 cut(s) 784
AcuI CTGAAG 1 cut(s) 672
AfiI CCNNNNNNNGG 1 cut(s) 712
AgsI TTSAA 6 cut(s) 72, 82, 305, 486, 620, 642
AjnI CCWGG 3 cut(s) 85, 346, 497
AluBI AGCT 3 cut(s) 480, 590, 827
AluI AGCT 3 cut(s) 480, 590, 827
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 5 cut(s) 115, 178, 376, 674, 686
AoxI GGCC 1 cut(s) 437
ApeKI GCWGC 2 cut(s) 627, 824
ApoI RAATTY 1 cut(s) 784
ArsI GACNNNNNNTTYG 2 cut(s) 479, 511
Asp700I GAANNNNTTC 1 cut(s) 756
AspLEI GCGC 3 cut(s) 98, 100, 368
AspS9I GGNCC 1 cut(s) 438
AsuC2I CCSGG 2 cut(s) 149, 799
AsuHPI GGTGA 3 cut(s) 101, 163, 702
BbsI GAAGAC 1 cut(s) 729
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 639, 836
BccI CCATC 1 cut(s) 767
BceAI ACGGC 1 cut(s) 452
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 3 cut(s) 87, 348, 499
BcnI CCSGG 2 cut(s) 149, 799
BcoDI GTCTC 5 cut(s) 115, 178, 376, 674, 686
BfaI CTAG 3 cut(s) 107, 170, 254
BfmI CTRYAG 1 cut(s) 625
BisI GCNGC 2 cut(s) 628, 825
BlsI GCNGC 2 cut(s) 629, 826
Bme1390I CCNGG 5 cut(s) 87, 149, 348, 499, 799
BmgT120I GGNCC 1 cut(s) 438
BmiI GGNNCC 1 cut(s) 411
BmrFI CCNGG 5 cut(s) 87, 149, 348, 499, 799
BmrI ACTGGG 1 cut(s) 453
BmsI GCATC 3 cut(s) 341, 853, 877
BmuI ACTGGG 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 729
BpmI CTGGAG 1 cut(s) 738
BpuMI CCSGG 2 cut(s) 149, 799
BsaI GGTCTC 1 cut(s) 674
BsaJI CCNNGG 5 cut(s) 346, 684, 798, 858, 882
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 1 cut(s) 712
Bse118I RCCGGY 2 cut(s) 712, 806
Bse1I ACTGG 4 cut(s) 101, 164, 193, 459
BseBI CCWGG 3 cut(s) 87, 348, 499
BseDI CCNNGG 5 cut(s) 346, 684, 798, 858, 882
BseGI GGATG 5 cut(s) 356, 420, 602, 868, 892
BseLI CCNNNNNNNGG 1 cut(s) 712
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 4 cut(s) 101, 164, 193, 459
BsePI GCGCGC 1 cut(s) 96
BseRI GAGGAG 2 cut(s) 45, 792
BseXI GCAGC 2 cut(s) 639, 836
BsgI GTGCAG 2 cut(s) 325, 556
Bsh1236I CGCG 3 cut(s) 96, 98, 366
Bsh1285I CGRYCG 1 cut(s) 528
BshFI GGCC 1 cut(s) 439
BsiEI CGRYCG 1 cut(s) 528
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 4 cut(s) 149, 713, 798, 807
BslI CCNNNNNNNGG 1 cut(s) 712
BsmAI GTCTC 5 cut(s) 115, 178, 376, 674, 686
BsnI GGCC 1 cut(s) 439
Bso31I GGTCTC 1 cut(s) 674
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 3 cut(s) 141, 707, 765
BspACI CCGC 2 cut(s) 94, 364
BspANI GGCC 1 cut(s) 439
BspCNI CTCAG 1 cut(s) 527
BspFNI CGCG 3 cut(s) 96, 98, 366
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 1 cut(s) 411
BspMAI CTGCAG 1 cut(s) 629
BspQI GCTCTTC 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 674
BsrFI RCCGGY 2 cut(s) 712, 806
BsrI ACTGG 4 cut(s) 101, 164, 193, 459
BssAI RCCGGY 2 cut(s) 712, 806
BssECI CCNNGG 5 cut(s) 346, 684, 798, 858, 882
BssHII GCGCGC 1 cut(s) 96
BssMI GATC 3 cut(s) 141, 707, 765
BssT1I CCWWGG 3 cut(s) 684, 858, 882
Bst2UI CCWGG 3 cut(s) 87, 348, 499
Bst4CI ACNGT 2 cut(s) 157, 697
Bst6I CTCTTC 1 cut(s) 290
BstAPI GCANNNNNTGC 1 cut(s) 830
BstC8I GCNNGC 4 cut(s) 98, 356, 360, 364
BstDEI CTNAG 3 cut(s) 116, 514, 613
BstEII GGTNACC 2 cut(s) 89, 151
BstF5I GGATG 5 cut(s) 356, 420, 602, 868, 892
BstFNI CGCG 3 cut(s) 96, 98, 366
BstHHI GCGC 3 cut(s) 98, 100, 368
BstKTI GATC 3 cut(s) 144, 710, 768
BstMAI GTCTC 5 cut(s) 115, 178, 376, 674, 686
BstMBI GATC 3 cut(s) 141, 707, 765
BstMCI CGRYCG 1 cut(s) 528
BstMWI GCNNNNNNNGC 2 cut(s) 830, 863
BstNI CCWGG 3 cut(s) 87, 348, 499
BstPI GGTNACC 2 cut(s) 89, 151
BstSCI CCNGG 5 cut(s) 85, 147, 346, 497, 797
BstSFI CTRYAG 1 cut(s) 625
BstUI CGCG 3 cut(s) 96, 98, 366
BstV1I GCAGC 2 cut(s) 639, 836
BstV2I GAAGAC 1 cut(s) 729
BstXI CCANNNNNNTGG 1 cut(s) 354
BsuRI GGCC 1 cut(s) 439
BtsCI GGATG 5 cut(s) 356, 420, 602, 868, 892
BtsIMutI CAGTG 4 cut(s) 137, 200, 466, 702
Cac8I GCNNGC 4 cut(s) 98, 356, 360, 364
CciI TCATGA 1 cut(s) 760
CfoI GCGC 3 cut(s) 98, 100, 368
Cfr10I RCCGGY 2 cut(s) 712, 806
Cfr13I GGNCC 1 cut(s) 438
CsiI ACCWGGT 1 cut(s) 85
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 2 cut(s) 631, 761
DdeI CTNAG 3 cut(s) 116, 514, 613
DpnI GATC 3 cut(s) 143, 709, 767
DpnII GATC 3 cut(s) 141, 707, 765
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Eco130I CCWWGG 3 cut(s) 684, 858, 882
Eco31I GGTCTC 1 cut(s) 674
Eco57I CTGAAG 1 cut(s) 672
Eco91I GGTNACC 2 cut(s) 89, 151
EcoO65I GGTNACC 2 cut(s) 89, 151
EcoRII CCWGG 3 cut(s) 85, 346, 497
EcoT14I CCWWGG 3 cut(s) 684, 858, 882
ErhI CCWWGG 3 cut(s) 684, 858, 882
FaeI CATG 2 cut(s) 634, 764
FaiI YATR 5 cut(s) 552, 554, 563, 632, 762
FalI AAGNNNNNCTT 4 cut(s) 52, 84, 224, 256
FatI CATG 2 cut(s) 630, 760
FauI CCCGC 1 cut(s) 371
FblI GTMKAC 2 cut(s) 528, 546
Fnu4HI GCNGC 2 cut(s) 628, 825
FokI GGATG 5 cut(s) 363, 407, 589, 875, 899
Fsp4HI GCNGC 2 cut(s) 628, 825
FspBI CTAG 3 cut(s) 107, 170, 254
GlaI GCGC 3 cut(s) 97, 99, 367
GluI GCNGC 2 cut(s) 628, 825
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 1 cut(s) 439
HapII CCGG 4 cut(s) 149, 713, 798, 807
HhaI GCGC 3 cut(s) 98, 100, 368
Hin1II CATG 2 cut(s) 634, 764
Hin6I GCGC 3 cut(s) 96, 98, 366
HinP1I GCGC 3 cut(s) 96, 98, 366
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HindIII AAGCTT 1 cut(s) 588
HinfI GANTC 3 cut(s) 25, 326, 454
HpaII CCGG 4 cut(s) 149, 713, 798, 807
HphI GGTGA 3 cut(s) 101, 163, 702
Hpy166II GTNNAC 4 cut(s) 294, 529, 547, 661
Hpy188I TCNGA 3 cut(s) 141, 248, 707
Hpy188III TCNNGA 4 cut(s) 22, 761, 789, 873
Hpy8I GTNNAC 4 cut(s) 294, 529, 547, 661
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 4 cut(s) 78, 243, 647, 739
HpyCH4III ACNGT 2 cut(s) 157, 697
HpyCH4V TGCA 6 cut(s) 342, 573, 595, 627, 833, 839
HpyF10VI GCNNNNNNNGC 2 cut(s) 830, 863
HpyF3I CTNAG 3 cut(s) 116, 514, 613
Hsp92II CATG 2 cut(s) 634, 764
HspAI GCGC 3 cut(s) 96, 98, 366
Kzo9I GATC 3 cut(s) 141, 707, 765
LguI GCTCTTC 1 cut(s) 290
LmnI GCTCC 2 cut(s) 409, 779
Lsp1109I GCAGC 2 cut(s) 639, 836
LweI GCATC 3 cut(s) 341, 853, 877
MabI ACCWGGT 1 cut(s) 85
MaeI CTAG 3 cut(s) 107, 170, 254
MaeIII GTNAC 2 cut(s) 89, 151
MalI GATC 3 cut(s) 143, 709, 767
MboI GATC 3 cut(s) 141, 707, 765
MboII GAAGA 5 cut(s) 271, 277, 317, 320, 734
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 4 cut(s) 386, 402, 491, 784
MnlI CCTC 7 cut(s) 27, 63, 66, 267, 434, 542, 770
MroXI GAANNNNTTC 1 cut(s) 756
MseI TTAA 1 cut(s) 578
MspI CCGG 4 cut(s) 149, 713, 798, 807
MspR9I CCNGG 5 cut(s) 87, 149, 348, 499, 799
MvaI CCWGG 3 cut(s) 87, 348, 499
MvnI CGCG 3 cut(s) 96, 98, 366
MwoI GCNNNNNNNGC 2 cut(s) 830, 863
NciI CCSGG 2 cut(s) 149, 799
NdeII GATC 3 cut(s) 141, 707, 765
NlaIII CATG 2 cut(s) 634, 764
NlaIV GGNNCC 1 cut(s) 411
NmuCI GTSAC 2 cut(s) 89, 151
PagI TCATGA 1 cut(s) 760
PauI GCGCGC 1 cut(s) 96
PciSI GCTCTTC 1 cut(s) 290
PdmI GAANNNNTTC 1 cut(s) 756
PfeI GAWTC 3 cut(s) 25, 326, 454
PkrI GCNGC 2 cut(s) 629, 826
Psp6I CCWGG 3 cut(s) 85, 346, 497
PspEI GGTNACC 2 cut(s) 89, 151
PspGI CCWGG 3 cut(s) 85, 346, 497
PspN4I GGNNCC 1 cut(s) 411
PspPI GGNCC 1 cut(s) 438
PstI CTGCAG 1 cut(s) 629
PteI GCGCGC 1 cut(s) 96
SalI GTCGAC 1 cut(s) 527
SapI GCTCTTC 1 cut(s) 290
SaqAI TTAA 1 cut(s) 578
SatI GCNGC 2 cut(s) 628, 825
Sau3AI GATC 3 cut(s) 141, 707, 765
Sau96I GGNCC 1 cut(s) 438
ScrFI CCNGG 5 cut(s) 87, 149, 348, 499, 799
SduI GDGCHC 1 cut(s) 285
SexAI ACCWGGT 1 cut(s) 85
SfaNI GCATC 3 cut(s) 341, 853, 877
SfcI CTRYAG 1 cut(s) 625
Sse9I AATT 4 cut(s) 386, 402, 491, 784
SsiI CCGC 2 cut(s) 94, 364
SspMI CTAG 3 cut(s) 107, 170, 254
StyD4I CCNGG 5 cut(s) 85, 147, 346, 497, 797
StyI CCWWGG 3 cut(s) 684, 858, 882
TaaI ACNGT 2 cut(s) 157, 697
TaqI TCGA 4 cut(s) 23, 58, 476, 528
TaqII GACCGA 1 cut(s) 514
TasI AATT 4 cut(s) 386, 402, 491, 784
TfiI GAWTC 3 cut(s) 25, 326, 454
Tru1I TTAA 1 cut(s) 578
Tru9I TTAA 1 cut(s) 578
TscAI CASTG 4 cut(s) 137, 200, 466, 702
TseFI GTSAC 2 cut(s) 89, 151
TseI GCWGC 2 cut(s) 627, 824
Tsp45I GTSAC 2 cut(s) 89, 151
TspDTI ATGAA 4 cut(s) 499, 591, 647, 749
TspGWI ACGGA 1 cut(s) 595
TspRI CASTG 4 cut(s) 137, 200, 466, 702
XapI RAATTY 1 cut(s) 784
XmiI GTMKAC 2 cut(s) 528, 546
XmnI GAANNNNTTC 1 cut(s) 756
XspI CTAG 3 cut(s) 107, 170, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.