RchiOBHm_Chr6g0308771

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013625
Physical Location & Seq
Forward (+)
66820675 .. 66822791
2117 bp
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UTR
Exon/CDS
Intron
PRQ27765

Sequence Viewer

Length: 357 bp
ATGACTTTCTGCACAATGGCAACCAAAGCTTTGCATTATTCATCTGTGTTCATATTTCAAATCTGCAGCATGAATCCTTCAAAAGGAACTGAAGGTGTAAACGAGCAAGGTGGAGTGGAGACCAAGGTGGAGACAGTGGATTTCCGATCACCGGCTGGAGAAGACAAAGAACCCGTAAAGGAGAAGGTGGAAATACTTCATGAGATCAACGATGGAGGAGCAAATTCTGGAAATACCGGGGCTACCGGCTTTGTGGGTAAAGCAGCTATTGCAGTTGCAGATACCTTTCAGTCAGCCAAGGATGCTGTTTCTGGAAAACCCAAGGATGCTGTTGCTGAAAATAAGACCACGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.37

Weight (kDa)

5.35

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 223
AcuI CTGAAG 1 cut(s) 111
AfiI CCNNNNNNNGG 2 cut(s) 83, 151
AgsI TTSAA 2 cut(s) 59, 81
AluBI AGCT 2 cut(s) 29, 266
AluI AGCT 2 cut(s) 29, 266
Alw26I GTCTC 2 cut(s) 113, 125
ApeKI GCWGC 2 cut(s) 66, 263
ApoI RAATTY 1 cut(s) 223
Asp700I GAANNNNTTC 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 78, 275
BccI CCATC 1 cut(s) 206
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 113, 125
BfmI CTRYAG 1 cut(s) 64
BisI GCNGC 2 cut(s) 67, 264
BlsI GCNGC 2 cut(s) 68, 265
Bme1390I CCNGG 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 2 cut(s) 292, 316
BpiI GAAGAC 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 4 cut(s) 123, 237, 297, 321
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 151
Bse118I RCCGGY 2 cut(s) 151, 245
BseDI CCNNGG 4 cut(s) 123, 237, 297, 321
BseGI GGATG 2 cut(s) 307, 331
BseLI CCNNNNNNNGG 2 cut(s) 83, 151
BseRI GAGGAG 1 cut(s) 231
BseXI GCAGC 2 cut(s) 78, 275
BsiSI CCGG 3 cut(s) 152, 237, 246
BslI CCNNNNNNNGG 2 cut(s) 83, 151
BsmAI GTCTC 2 cut(s) 113, 125
Bso31I GGTCTC 1 cut(s) 113
Bsp143I GATC 2 cut(s) 146, 204
BspHI TCATGA 1 cut(s) 199
BspMAI CTGCAG 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 113
BsrFI RCCGGY 2 cut(s) 151, 245
BssAI RCCGGY 2 cut(s) 151, 245
BssECI CCNNGG 4 cut(s) 123, 237, 297, 321
BssMI GATC 2 cut(s) 146, 204
BssT1I CCWWGG 3 cut(s) 123, 297, 321
Bst4CI ACNGT 1 cut(s) 136
BstAPI GCANNNNNTGC 1 cut(s) 269
BstENI CCTNNNNNAGG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 307, 331
BstKTI GATC 2 cut(s) 149, 207
BstMAI GTCTC 2 cut(s) 113, 125
BstMBI GATC 2 cut(s) 146, 204
BstMWI GCNNNNNNNGC 3 cut(s) 26, 269, 302
BstSCI CCNGG 1 cut(s) 236
BstSFI CTRYAG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 78, 275
BstV2I GAAGAC 1 cut(s) 168
BtsCI GGATG 2 cut(s) 307, 331
BtsIMutI CAGTG 1 cut(s) 141
CciI TCATGA 1 cut(s) 199
Cfr10I RCCGGY 2 cut(s) 151, 245
CviAII CATG 2 cut(s) 70, 200
CviJI RGCY 6 cut(s) 29, 155, 242, 249, 266, 296
CviKI_1 RGCY 6 cut(s) 29, 155, 242, 249, 266, 296
DpnI GATC 2 cut(s) 148, 206
DpnII GATC 2 cut(s) 146, 204
Eco130I CCWWGG 3 cut(s) 123, 297, 321
Eco31I GGTCTC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 111
EcoNI CCTNNNNNAGG 1 cut(s) 81
EcoT14I CCWWGG 3 cut(s) 123, 297, 321
ErhI CCWWGG 3 cut(s) 123, 297, 321
FaeI CATG 2 cut(s) 73, 203
FaiI YATR 3 cut(s) 53, 71, 201
FatI CATG 2 cut(s) 69, 199
Fnu4HI GCNGC 2 cut(s) 67, 264
FokI GGATG 2 cut(s) 314, 338
Fsp4HI GCNGC 2 cut(s) 67, 264
GluI GCNGC 2 cut(s) 67, 264
GsuI CTGGAG 1 cut(s) 177
HapII CCGG 3 cut(s) 152, 237, 246
Hin1II CATG 2 cut(s) 73, 203
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 1 cut(s) 73
HpaII CCGG 3 cut(s) 152, 237, 246
HphI GGTGA 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 146
Hpy188III TCNNGA 3 cut(s) 200, 228, 312
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 3 cut(s) 86, 87, 178
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 5 cut(s) 12, 34, 66, 272, 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 269, 302
Hsp92II CATG 2 cut(s) 73, 203
Kzo9I GATC 2 cut(s) 146, 204
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 6 cut(s) 141, 165, 213, 250, 259, 297
Lsp1109I GCAGC 2 cut(s) 78, 275
LweI GCATC 2 cut(s) 292, 316
MalI GATC 2 cut(s) 148, 206
MboI GATC 2 cut(s) 146, 204
MboII GAAGA 1 cut(s) 173
MluCI AATT 1 cut(s) 223
MnlI CCTC 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 195
MspI CCGG 3 cut(s) 152, 237, 246
MspR9I CCNGG 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 26, 269, 302
NciI CCSGG 1 cut(s) 238
NdeII GATC 2 cut(s) 146, 204
NlaIII CATG 2 cut(s) 73, 203
PagI TCATGA 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 2 cut(s) 68, 265
PstI CTGCAG 1 cut(s) 68
SatI GCNGC 2 cut(s) 67, 264
Sau3AI GATC 2 cut(s) 146, 204
ScrFI CCNGG 1 cut(s) 238
SetI ASST 7 cut(s) 31, 97, 112, 129, 189, 268, 287
SfaNI GCATC 2 cut(s) 292, 316
SfcI CTRYAG 1 cut(s) 64
Sse9I AATT 1 cut(s) 223
StyD4I CCNGG 1 cut(s) 236
StyI CCWWGG 3 cut(s) 123, 297, 321
TaaI ACNGT 1 cut(s) 136
TasI AATT 1 cut(s) 223
TfiI GAWTC 1 cut(s) 73
TscAI CASTG 1 cut(s) 141
TseI GCWGC 2 cut(s) 66, 263
TspDTI ATGAA 4 cut(s) 30, 40, 86, 188
TspRI CASTG 1 cut(s) 141
XagI CCTNNNNNAGG 1 cut(s) 81
XapI RAATTY 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.