Rh7AG437900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013625
Physical Location & Seq
Forward (+)
59035238 .. 59074581
39344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG437900.1

Sequence Viewer

Length: 660 bp
ATGGGAAATCAGAAGCTCATGGCAGAGGCTAGTAGTTTCCTGATTGGCTGGGTAGACCTTTTGTCTCAAAAGCTGGCTGGTTGGGATCTGGCCCAGTTTTCTGCCATTGCGGGTGGTGGTATGAATGGCGCTAGCCTCTCTTGGTCGATGTTTTCTGGTTCGAAGCTTGCCAAAGTAGTTCCTAGCGGTCTTGAAGACATGGTTGCGCCTCAGTCTGGTCTCGATAAAGGCGGTGGTGCACAAGGCCGGTGGTGCTCCTGTCTTGGTCCCAACGGCAGCGACGGCTTTGCTACCAAGTATGTTACTGAAGAATATACATCAGCAAATGATGCTTATGTTGGTTTGGCTCCACCAGGCGATGTAGGATCATGGCAACGAGAATGCAAGGGAACTGAAGGTTTAAACGAGCAAGGTGGAGTGGAGACCAAGGTGGAGACACTGGATTTCCGATCACCGGCTGGAGAAGACAAAGAACCCGTAAAGGAGAAGGTGGAAATACTTCATGAGATCAACGATGGAGGAGCAAATTCTGGAAATACCGGGGCTACCGGCTTTGTGGGTAAAGCAGCTATTGCAGTTGCAGATACCTTTCAGTCAGCCAAGGATGCTGTTTCTGGAAAACCCAAGGATGCTGTTGCTGAAAATAAGACCACGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

22.6

Weight (kDa)

4.76

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 54
AciI CCGC 3 cut(s) 110, 186, 231
AclWI GGATC 2 cut(s) 93, 373
AcsI RAATTY 1 cut(s) 526
AcuI CTGAAG 2 cut(s) 327, 414
AfiI CCNNNNNNNGG 2 cut(s) 215, 454
AgsI TTSAA 1 cut(s) 194
AhdI GACNNNNNGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 4 cut(s) 16, 73, 166, 569
AluI AGCT 4 cut(s) 16, 73, 166, 569
Alw21I GWGCWC 2 cut(s) 241, 257
Alw26I GTCTC 4 cut(s) 69, 224, 416, 428
Alw44I GTGCAC 1 cut(s) 237
AlwI GGATC 2 cut(s) 93, 373
AoxI GGCC 2 cut(s) 90, 244
ApaLI GTGCAC 1 cut(s) 237
ApeKI GCWGC 2 cut(s) 276, 566
ApoI RAATTY 1 cut(s) 526
Asp700I GAANNNNTTC 1 cut(s) 498
AspLEI GCGC 2 cut(s) 131, 208
AspS9I GGNCC 2 cut(s) 91, 266
AsuC2I CCSGG 1 cut(s) 541
AsuHPI GGTGA 1 cut(s) 444
AsuII TTCGAA 1 cut(s) 161
AsuNHI GCTAGC 1 cut(s) 131
AvaII GGWCC 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 241
BbsI GAAGAC 2 cut(s) 201, 471
Bbv12I GWGCWC 2 cut(s) 241, 257
BbvI GCAGC 2 cut(s) 288, 578
BccI CCATC 1 cut(s) 509
BceAI ACGGC 2 cut(s) 289, 298
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BciT130I CCWGG 1 cut(s) 354
BcnI CCSGG 1 cut(s) 541
BcoDI GTCTC 4 cut(s) 69, 224, 416, 428
BfaI CTAG 3 cut(s) 30, 132, 183
BfoI RGCGCY 1 cut(s) 132
BisI GCNGC 2 cut(s) 277, 567
BlsI GCNGC 2 cut(s) 278, 568
Bme1390I CCNGG 2 cut(s) 354, 541
Bme18I GGWCC 1 cut(s) 266
BmeRI GACNNNNNGTC 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 91, 266
BmiI GGNNCC 2 cut(s) 268, 348
BmrFI CCNGG 2 cut(s) 354, 541
BmrI ACTGGG 1 cut(s) 88
BmsI GCATC 3 cut(s) 319, 595, 619
BmtI GCTAGC 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 88
BpiI GAAGAC 2 cut(s) 201, 471
BpmI CTGGAG 1 cut(s) 480
Bpu14I TTCGAA 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 541
BsaI GGTCTC 2 cut(s) 224, 416
BsaJI CCNNGG 4 cut(s) 426, 540, 600, 624
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 454
Bse118I RCCGGY 3 cut(s) 246, 454, 548
Bse1I ACTGG 2 cut(s) 94, 444
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 4 cut(s) 426, 540, 600, 624
BseGI GGATG 2 cut(s) 610, 634
BseLI CCNNNNNNNGG 2 cut(s) 215, 454
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 2 cut(s) 94, 444
BseRI GAGGAG 1 cut(s) 534
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 2 cut(s) 288, 578
BseYI CCCAGC 1 cut(s) 48
BshFI GGCC 2 cut(s) 92, 246
BsiHKAI GWGCWC 2 cut(s) 241, 257
BsiSI CCGG 4 cut(s) 247, 455, 540, 549
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 2 cut(s) 215, 454
BsmAI GTCTC 4 cut(s) 69, 224, 416, 428
BsmFI GGGAC 1 cut(s) 252
BsmI GAATGC 1 cut(s) 386
BsnI GGCC 2 cut(s) 92, 246
Bso31I GGTCTC 2 cut(s) 224, 416
Bsp119I TTCGAA 1 cut(s) 161
Bsp1286I GDGCHC 2 cut(s) 241, 257
Bsp143I GATC 4 cut(s) 85, 365, 449, 507
BspACI CCGC 3 cut(s) 110, 186, 231
BspANI GGCC 2 cut(s) 92, 246
BspCNI CTCAG 1 cut(s) 223
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 2 cut(s) 268, 348
BspOI GCTAGC 1 cut(s) 135
BspPI GGATC 2 cut(s) 93, 373
BspT104I TTCGAA 1 cut(s) 161
BspTNI GGTCTC 2 cut(s) 224, 416
BsrDI GCAATG 1 cut(s) 105
BsrFI RCCGGY 3 cut(s) 246, 454, 548
BsrI ACTGG 2 cut(s) 94, 444
BssAI RCCGGY 3 cut(s) 246, 454, 548
BssECI CCNNGG 4 cut(s) 426, 540, 600, 624
BssMI GATC 4 cut(s) 85, 365, 449, 507
BssT1I CCWWGG 3 cut(s) 426, 600, 624
Bst2UI CCWGG 1 cut(s) 354
BstAPI GCANNNNNTGC 2 cut(s) 329, 572
BstBI TTCGAA 1 cut(s) 161
BstC8I GCNNGC 3 cut(s) 75, 133, 168
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 610, 634
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 2 cut(s) 131, 208
BstKTI GATC 4 cut(s) 88, 368, 452, 510
BstMAI GTCTC 4 cut(s) 69, 224, 416, 428
BstMBI GATC 4 cut(s) 85, 365, 449, 507
BstMWI GCNNNNNNNGC 5 cut(s) 252, 282, 329, 572, 605
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 2 cut(s) 352, 539
BstSLI GKGCMC 1 cut(s) 241
BstV1I GCAGC 2 cut(s) 288, 578
BstV2I GAAGAC 2 cut(s) 201, 471
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 2 cut(s) 92, 246
BtgZI GCGATG 1 cut(s) 372
BtsCI GGATG 2 cut(s) 610, 634
BtsIMutI CAGTG 1 cut(s) 437
Cac8I GCNNGC 3 cut(s) 75, 133, 168
CciI TCATGA 1 cut(s) 502
CfoI GCGC 2 cut(s) 131, 208
Cfr10I RCCGGY 3 cut(s) 246, 454, 548
Cfr13I GGNCC 2 cut(s) 91, 266
CspCI CAANNNNNGTGG 2 cut(s) 230, 265
CviAII CATG 4 cut(s) 19, 199, 369, 503
DdeI CTNAG 1 cut(s) 210
DpnI GATC 4 cut(s) 87, 367, 451, 509
DpnII GATC 4 cut(s) 85, 365, 449, 507
DraI TTTAAA 1 cut(s) 402
DriI GACNNNNNGTC 1 cut(s) 61
Eam1105I GACNNNNNGTC 1 cut(s) 61
Eco130I CCWWGG 3 cut(s) 426, 600, 624
Eco31I GGTCTC 2 cut(s) 224, 416
Eco47I GGWCC 1 cut(s) 266
Eco57I CTGAAG 2 cut(s) 327, 414
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 3 cut(s) 426, 600, 624
ErhI CCWWGG 3 cut(s) 426, 600, 624
FaeI CATG 4 cut(s) 22, 202, 372, 506
FaiI YATR 8 cut(s) 20, 122, 200, 300, 315, 336, 370, 504
FaqI GGGAC 1 cut(s) 252
FatI CATG 4 cut(s) 18, 198, 368, 502
FauI CCCGC 1 cut(s) 103
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 2 cut(s) 277, 567
FokI GGATG 2 cut(s) 617, 641
Fsp4HI GCNGC 2 cut(s) 277, 567
FspBI CTAG 3 cut(s) 30, 132, 183
GlaI GCGC 2 cut(s) 130, 207
GluI GCNGC 2 cut(s) 277, 567
GsaI CCCAGC 1 cut(s) 52
GsuI CTGGAG 1 cut(s) 480
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 2 cut(s) 92, 246
HapII CCGG 4 cut(s) 247, 455, 540, 549
HhaI GCGC 2 cut(s) 131, 208
Hin1II CATG 4 cut(s) 22, 202, 372, 506
Hin6I GCGC 2 cut(s) 129, 206
HinP1I GCGC 2 cut(s) 129, 206
HindIII AAGCTT 1 cut(s) 164
HpaII CCGG 4 cut(s) 247, 455, 540, 549
HphI GGTGA 1 cut(s) 444
Hpy166II GTNNAC 2 cut(s) 55, 239
Hpy188I TCNGA 2 cut(s) 12, 449
Hpy188III TCNNGA 6 cut(s) 40, 191, 221, 503, 531, 615
Hpy8I GTNNAC 2 cut(s) 55, 239
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 389, 481
HpyCH4V TGCA 4 cut(s) 239, 384, 575, 581
HpyF10VI GCNNNNNNNGC 5 cut(s) 252, 282, 329, 572, 605
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 4 cut(s) 22, 202, 372, 506
HspAI GCGC 2 cut(s) 129, 206
Kzo9I GATC 4 cut(s) 85, 365, 449, 507
LmnI GCTCC 3 cut(s) 260, 352, 521
Lsp1109I GCAGC 2 cut(s) 288, 578
LweI GCATC 3 cut(s) 319, 595, 619
MaeI CTAG 3 cut(s) 30, 132, 183
MaeIII GTNAC 1 cut(s) 301
MalI GATC 4 cut(s) 87, 367, 451, 509
MboI GATC 4 cut(s) 85, 365, 449, 507
MboII GAAGA 3 cut(s) 206, 320, 476
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 2 cut(s) 241, 257
MluCI AATT 1 cut(s) 526
MnlI CCTC 4 cut(s) 19, 146, 219, 512
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 1 cut(s) 401
MspI CCGG 4 cut(s) 247, 455, 540, 549
MspR9I CCNGG 2 cut(s) 354, 541
MssI GTTTAAAC 1 cut(s) 402
Mva1269I GAATGC 1 cut(s) 386
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 5 cut(s) 252, 282, 329, 572, 605
NciI CCSGG 1 cut(s) 541
NdeII GATC 4 cut(s) 85, 365, 449, 507
NheI GCTAGC 1 cut(s) 131
NlaIII CATG 4 cut(s) 22, 202, 372, 506
NlaIV GGNNCC 2 cut(s) 268, 348
NspV TTCGAA 1 cut(s) 161
PagI TCATGA 1 cut(s) 502
PctI GAATGC 1 cut(s) 386
PdmI GAANNNNTTC 1 cut(s) 498
PkrI GCNGC 2 cut(s) 278, 568
PmeI GTTTAAAC 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 48
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 268, 348
PspPI GGNCC 2 cut(s) 91, 266
PsuI RGATCY 1 cut(s) 85
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 2 cut(s) 277, 567
Sau3AI GATC 4 cut(s) 85, 365, 449, 507
Sau96I GGNCC 2 cut(s) 91, 266
ScrFI CCNGG 2 cut(s) 354, 541
SduI GDGCHC 2 cut(s) 241, 257
SfaNI GCATC 3 cut(s) 319, 595, 619
SfuI TTCGAA 1 cut(s) 161
SinI GGWCC 1 cut(s) 266
Sse9I AATT 1 cut(s) 526
SsiI CCGC 3 cut(s) 110, 186, 231
SspMI CTAG 3 cut(s) 30, 132, 183
StyD4I CCNGG 2 cut(s) 352, 539
StyI CCWWGG 3 cut(s) 426, 600, 624
TaqI TCGA 3 cut(s) 146, 161, 222
TasI AATT 1 cut(s) 526
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TscAI CASTG 1 cut(s) 444
TseI GCWGC 2 cut(s) 276, 566
TspDTI ATGAA 2 cut(s) 137, 491
TspRI CASTG 1 cut(s) 444
VneI GTGCAC 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 266
XapI RAATTY 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 3 cut(s) 30, 132, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.