Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009346.1

Orthogroup ID

OG0013625

Physical Location & Seq

Genomic Coordinates Reverse (-)

6347 .. 6728

Gene Structure 382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009346.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgaatacttcaaaagtaactgaaggtgtaaacgagcaaggtggagtggagaccaaggtggagacagtggatttccgatcaccggctggagaagacaaagaacccgtaaaggagaaggtggaaatacttcatgagatcaacgatggaggagcaaattctggaaataccggggctaccggctttgtgggtaaagcagctattgcagttgcagatacctttcagtcagccaaggatgctgtttctggaaaacccaaggatgctgttgctgaaaacaagaccacgaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

9.81

Weight (kDa)

4.95

Isoelectric Point (pI)

28.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013625)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33780
malus_domestica	MD08G1092300.v1.1 MD08G1092400.v1.1 MD15G1076900.v1.1
prunus_persica	Prupe.1G430300_v2.0.a1
pyrus_communis	pycom08g07510
rosa_chinensis	RchiOBHm_Chr6g0308771
rosa_laevigata	RLG00000010620
rosa_multiflora	Rmu_sc0000638.1_g000002 Rmu_sc0000871.1_g000035 Rmu_sc0006892.1_g000001 Rmu_sc0009346.1_g000002 Rmu_sc0019189.1_g000004
rosa_samantha	Rh6AG423100 Rh6CG494300 Rh7AG006600 Rh7AG437900
rosa_wichuraiana	Rw6G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	12
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	2 cut(s)	44, 56
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	154
Asp700I	GAANNNNTTC	1 cut(s)	126
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	1 cut(s)	137
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	44, 56
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	2 cut(s)	223, 247
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	108
BpuMI	CCSGG	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	4 cut(s)	54, 168, 228, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse118I	RCCGGY	2 cut(s)	82, 176
BseDI	CCNNGG	4 cut(s)	54, 168, 228, 252
BseGI	GGATG	2 cut(s)	238, 262
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	206
BsiSI	CCGG	3 cut(s)	83, 168, 177
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	2 cut(s)	44, 56
Bso31I	GGTCTC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	77, 135
BspHI	TCATGA	1 cut(s)	130
BspTNI	GGTCTC	1 cut(s)	44
BsrFI	RCCGGY	2 cut(s)	82, 176
BssAI	RCCGGY	2 cut(s)	82, 176
BssECI	CCNNGG	4 cut(s)	54, 168, 228, 252
BssMI	GATC	2 cut(s)	77, 135
BssT1I	CCWWGG	3 cut(s)	54, 228, 252
Bst4CI	ACNGT	1 cut(s)	67
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	238, 262
BstKTI	GATC	2 cut(s)	80, 138
BstMAI	GTCTC	2 cut(s)	44, 56
BstMBI	GATC	2 cut(s)	77, 135
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 233
BstSCI	CCNGG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	206
BstV2I	GAAGAC	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	238, 262
BtsIMutI	CAGTG	1 cut(s)	72
CciI	TCATGA	1 cut(s)	130
Cfr10I	RCCGGY	2 cut(s)	82, 176
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	5 cut(s)	86, 173, 180, 197, 227
CviKI_1	RGCY	5 cut(s)	86, 173, 180, 197, 227
DpnI	GATC	2 cut(s)	79, 137
DpnII	GATC	2 cut(s)	77, 135
Eco130I	CCWWGG	3 cut(s)	54, 228, 252
Eco31I	GGTCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	42
EcoT14I	CCWWGG	3 cut(s)	54, 228, 252
ErhI	CCWWGG	3 cut(s)	54, 228, 252
FaeI	CATG	1 cut(s)	134
FaiI	YATR	1 cut(s)	132
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	2 cut(s)	245, 269
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	108
HapII	CCGG	3 cut(s)	83, 168, 177
Hin1II	CATG	1 cut(s)	134
HpaII	CCGG	3 cut(s)	83, 168, 177
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	3 cut(s)	131, 159, 243
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	17, 109
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	203, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 233
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	77, 135
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	6 cut(s)	72, 96, 144, 181, 190, 228
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	2 cut(s)	223, 247
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	2 cut(s)	79, 137
MboI	GATC	2 cut(s)	77, 135
MboII	GAAGA	1 cut(s)	104
MluCI	AATT	1 cut(s)	154
MnlI	CCTC	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	126
MspI	CCGG	3 cut(s)	83, 168, 177
MspR9I	CCNGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	2 cut(s)	200, 233
NciI	CCSGG	1 cut(s)	169
NdeII	GATC	2 cut(s)	77, 135
NlaIII	CATG	1 cut(s)	134
PagI	TCATGA	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	196
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	77, 135
ScrFI	CCNGG	1 cut(s)	169
SetI	ASST	6 cut(s)	28, 43, 60, 120, 199, 218
SfaNI	GCATC	2 cut(s)	223, 247
Sse9I	AATT	1 cut(s)	154
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	3 cut(s)	54, 228, 252
TaaI	ACNGT	1 cut(s)	67
TasI	AATT	1 cut(s)	154
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	17, 119
TspRI	CASTG	1 cut(s)	72
XapI	RAATTY	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.