Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013625

Physical Location & Seq

Genomic Coordinates Forward (+)

5235444 .. 5236084

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1076900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGTCGCCCGCCTGATCATTTTTTATTTGGAGGGAAGTGAAGAAACAAACGAGCAAGGAGCAGTGGAGATCAAAGTAAGGACGGTAGATTATCGATCGCCGGCAGGGGAAGACAAACAGCCCAAGAAGGAGAAGGTTGAGGTGGTTCATGAGATTCGAGATGGAGGAGGTAGTGACTTTGTTGATCTTGATGCAACTGCTGCAGTTGCACATACCCTCAAGTCAGCCAAGGATTCCATTTCTGGAAGTGACAAATATAAGATCACCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

91

Amino Acids

9.87

Weight (kDa)

5.35

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013625)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33780
malus_domestica	MD08G1092300.v1.1 MD08G1092400.v1.1 MD15G1076900.v1.1
prunus_persica	Prupe.1G430300_v2.0.a1
pyrus_communis	pycom08g07510
rosa_chinensis	RchiOBHm_Chr6g0308771
rosa_laevigata	RLG00000010620
rosa_multiflora	Rmu_sc0000638.1_g000002 Rmu_sc0000871.1_g000035 Rmu_sc0006892.1_g000001 Rmu_sc0009346.1_g000002 Rmu_sc0019189.1_g000004
rosa_samantha	Rh6AG423100 Rh6CG494300 Rh7AG006600 Rh7AG437900
rosa_wichuraiana	Rw6G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	155
BclI	TGATCA	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
BmsI	GCATC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	100
BseCI	ATCGAT	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	228
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	187
Bsh1285I	CGRYCG	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	94
BsiEI	CGRYCG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	101
Bsp143I	GATC	5 cut(s)	15, 69, 95, 184, 261
BspACI	CCGC	1 cut(s)	10
BspDI	ATCGAT	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	148
BspMAI	CTGCAG	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	5 cut(s)	15, 69, 95, 184, 261
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	85
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	10, 102
BstKTI	GATC	5 cut(s)	18, 72, 98, 187, 264
BstMBI	GATC	5 cut(s)	15, 69, 95, 184, 261
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 206
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	117
Bsu15I	ATCGAT	1 cut(s)	94
BsuTUI	ATCGAT	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	10, 102
CciI	TCATGA	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	100
ClaI	ATCGAT	1 cut(s)	94
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	2 cut(s)	121, 227
CviKI_1	RGCY	2 cut(s)	121, 227
DpnI	GATC	5 cut(s)	17, 71, 97, 186, 263
DpnII	GATC	5 cut(s)	15, 69, 95, 184, 261
Eco130I	CCWWGG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	1 cut(s)	152
FaiI	YATR	3 cut(s)	150, 213, 258
FatI	CATG	1 cut(s)	148
FauI	CCCGC	1 cut(s)	17
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	201
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	1 cut(s)	152
HinfI	GANTC	2 cut(s)	154, 233
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	1 cut(s)	256
Hpy188III	TCNNGA	4 cut(s)	149, 158, 188, 243
HpyAV	CCTTC	2 cut(s)	121, 127
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	3 cut(s)	194, 203, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 206
Hsp92II	CATG	1 cut(s)	152
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	5 cut(s)	15, 69, 95, 184, 261
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	4 cut(s)	26, 90, 114, 228
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	181
MaeIII	GTNAC	2 cut(s)	173, 248
MalI	GATC	5 cut(s)	17, 71, 97, 186, 263
MboI	GATC	5 cut(s)	15, 69, 95, 184, 261
MboII	GAAGA	2 cut(s)	53, 122
MnlI	CCTC	5 cut(s)	25, 133, 158, 161, 227
MroNI	GCCGGC	1 cut(s)	100
MspI	CCGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	200, 206
NaeI	GCCGGC	1 cut(s)	102
NdeII	GATC	5 cut(s)	15, 69, 95, 184, 261
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	152
NmuCI	GTSAC	2 cut(s)	173, 248
PagI	TCATGA	1 cut(s)	148
PdiI	GCCGGC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	154, 233
PkrI	GCNGC	1 cut(s)	202
Ple19I	CGATCG	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	205
PvuI	CGATCG	1 cut(s)	98
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	5 cut(s)	15, 69, 95, 184, 261
SetI	ASST	3 cut(s)	138, 144, 172
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
SsiI	CCGC	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	2 cut(s)	94, 157
TfiI	GAWTC	2 cut(s)	154, 233
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	2 cut(s)	173, 248
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	2 cut(s)	173, 248
TspDTI	ATGAA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.