Rh6AG423100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
61583994 .. 61584257
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG423100.1

Sequence Viewer

Length: 264 bp
ATGAATAATTCAAAAGGAACTGAAGGTGTAAATGAGCAAGGTGGAGTGGAGATTAAGGTGGACAAAGTGGATTTCCGATCACCGGCAAGAGAAGACAAAGAACTCGTAAAGGAGAAGGTGGAAATGCTTCATGAGATCAACAACGGAGGAGCAAATTCTGGAAATGCAGGGGCTGCCGGCTTTGTGGGTAAAATAGCTACCGCAGTTGCAGATACCTTTCAATCAGCCAAGGATACTGTTGCTGAAACTAAGACCACGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.14

Weight (kDa)

5.37

Isoelectric Point (pI)

18.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 201
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 2 cut(s) 12, 221
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
AlwNI CAGNNNCTG 1 cut(s) 173
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 154
Asp700I GAANNNNTTC 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 160
BciVI GTATCC 1 cut(s) 226
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse118I RCCGGY 2 cut(s) 82, 176
BseDI CCNNGG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 82
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 160
BsiSI CCGG 2 cut(s) 83, 177
BslI CCNNNNNNNGG 1 cut(s) 82
Bsp143I GATC 2 cut(s) 77, 135
BspACI CCGC 1 cut(s) 201
BspHI TCATGA 1 cut(s) 130
BsrFI RCCGGY 2 cut(s) 82, 176
BssAI RCCGGY 2 cut(s) 82, 176
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 2 cut(s) 77, 135
BssT1I CCWWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 238
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 249
BstKTI GATC 2 cut(s) 80, 138
BstMBI GATC 2 cut(s) 77, 135
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 99
BsuI GTATCC 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 178
CaiI CAGNNNCTG 1 cut(s) 173
CciI TCATGA 1 cut(s) 130
Cfr10I RCCGGY 2 cut(s) 82, 176
CviAII CATG 1 cut(s) 131
CviJI RGCY 4 cut(s) 173, 180, 197, 227
CviKI_1 RGCY 4 cut(s) 173, 180, 197, 227
DdeI CTNAG 1 cut(s) 249
DpnI GATC 2 cut(s) 79, 137
DpnII GATC 2 cut(s) 77, 135
Eco130I CCWWGG 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 1 cut(s) 134
FaiI YATR 1 cut(s) 132
FatI CATG 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 174
HapII CCGG 2 cut(s) 83, 177
Hin1II CATG 1 cut(s) 134
HpaII CCGG 2 cut(s) 83, 177
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 2 cut(s) 131, 159
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 2 cut(s) 17, 109
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 167, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 1 cut(s) 249
Hsp92II CATG 1 cut(s) 134
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 77, 135
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 4 cut(s) 96, 144, 153, 190
Lsp1109I GCAGC 1 cut(s) 160
MalI GATC 2 cut(s) 79, 137
MboI GATC 2 cut(s) 77, 135
MboII GAAGA 1 cut(s) 104
MluCI AATT 2 cut(s) 7, 154
MnlI CCTC 1 cut(s) 140
MroNI GCCGGC 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 1 cut(s) 54
MspI CCGG 2 cut(s) 83, 177
MwoI GCNNNNNNNGC 1 cut(s) 173
NaeI GCCGGC 1 cut(s) 178
NdeII GATC 2 cut(s) 77, 135
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 1 cut(s) 134
PagI TCATGA 1 cut(s) 130
PdiI GCCGGC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 126
PkrI GCNGC 1 cut(s) 175
PstNI CAGNNNCTG 1 cut(s) 173
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 2 cut(s) 77, 135
SetI ASST 6 cut(s) 28, 43, 60, 120, 199, 218
SgeI CNNG 9 cut(s) 50, 95, 99, 116, 143, 171, 180, 189, 241
Sse9I AATT 2 cut(s) 7, 154
SsiI CCGC 1 cut(s) 201
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 238
TasI AATT 2 cut(s) 7, 154
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 17, 119
TspGWI ACGGA 1 cut(s) 159
XapI RAATTY 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.