Rmu_sc0000638.1_g000002

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000638.1
OG0013625
Physical Location & Seq
Reverse (-)
5154 .. 9887
4734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000638.1_g000002.1.cds

Sequence Viewer

Length: 807 bp
atgccagcagtacacatgtcaccagggcataaagtatgcgccaaaagacacatgaagccctaccaccgattcgcaatagcaacacaacggcaattgcgagaacaatctccccaccccagccaagactcctcttatgtggggacttgggggactgggggtaatggctgtacggaagccaagtggcatgaactcaccttgtacttccgatacttttaccaaagacaaactccccacccaagagaactcttgaccggggacttgttggtatacacatacttactaggcaccaatatcagaagcaccagactcctatcgccaatacacaagcaaggaaagctcctagccgagggtcccgatacccctcggggcaatatcgagaaccccgagcatcccacaccgaaagaaacggaaccaagctcccacaaatctgctacattaaggtcatctccaacaactcaaagaggcaagaagtccttcgtcggaaggctagagaagaaccttgtggcgaggttggtgctctcctcgtccacaacgcttgaagaagaagtcaggtcaagggactcccccgacgactgcaccccacggtgctggcatgcctgcgcacacgctcaaaatagacagtttgcacgccaactggttttggagccaaacatatactacttccgcatccaactcatgccaactatcaaagaagagatttgctctgtgactttgacttcgccaccattttaccaaggccacaggagcaccacagatttgaataatgtgatcattgcaatgtcaaagcgagatttcccagttgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

268

Amino Acids

30.56

Weight (kDa)

9.49

Isoelectric Point (pI)

71.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 601
AccB1I GGYRCC 1 cut(s) 284
AccI GTMKAC 1 cut(s) 267
AciI CCGC 1 cut(s) 664
AfaI GTAC 3 cut(s) 12, 169, 200
AfiI CCNNNNNNNGG 1 cut(s) 346
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 2 cut(s) 539, 760
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 2 cut(s) 337, 417
AluI AGCT 2 cut(s) 337, 417
Alw21I GWGCWC 2 cut(s) 519, 749
Ama87I CYCGRG 2 cut(s) 363, 383
AoxI GGCC 1 cut(s) 736
ArsI GACNNNNNNTTYG 2 cut(s) 700, 732
Asp700I GAANNNNTTC 1 cut(s) 473
AspLEI GCGC 2 cut(s) 41, 602
AspS9I GGNCC 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 12, 184
AvaI CYCGRG 2 cut(s) 363, 383
AvaII GGWCC 1 cut(s) 350
BanI GGYRCC 1 cut(s) 284
Bbv12I GWGCWC 2 cut(s) 519, 749
BceAI ACGGC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 496, 530
BciT130I CCWGG 1 cut(s) 24
BclI TGATCA 1 cut(s) 768
BcnI CCSGG 1 cut(s) 253
BfaI CTAG 3 cut(s) 281, 341, 488
Bme1390I CCNGG 2 cut(s) 24, 253
Bme18I GGWCC 1 cut(s) 350
BmeT110I CYCGRG 2 cut(s) 363, 383
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 5 cut(s) 286, 351, 352, 411, 645
BmrFI CCNGG 2 cut(s) 24, 253
BmrI ACTGGG 2 cut(s) 162, 791
BmsI GCATC 2 cut(s) 397, 675
BmuI ACTGGG 2 cut(s) 162, 791
BplI GAGNNNNNCTC 2 cut(s) 686, 718
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 6 cut(s) 23, 252, 345, 362, 581, 733
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse1I ACTGG 3 cut(s) 157, 639, 797
Bse3DI GCAATG 2 cut(s) 771, 783
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 6 cut(s) 23, 252, 345, 362, 581, 733
BseGI GGATG 2 cut(s) 388, 666
BseLI CCNNNNNNNGG 1 cut(s) 346
BseMI GCAATG 2 cut(s) 771, 783
BseNI ACTGG 3 cut(s) 157, 639, 797
BseRI GAGGAG 2 cut(s) 118, 511
BseYI CCCAGC 1 cut(s) 116
BsgI GTGCAG 1 cut(s) 559
BshFI GGCC 1 cut(s) 738
BshNI GGYRCC 1 cut(s) 284
BsiHKAI GWGCWC 2 cut(s) 519, 749
BsiHKCI CYCGRG 2 cut(s) 363, 383
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 5 cut(s) 154, 163, 269, 336, 572
BslI CCNNNNNNNGG 1 cut(s) 346
BsmFI GGGAC 5 cut(s) 154, 163, 269, 336, 572
BsnI GGCC 1 cut(s) 738
BsoBI CYCGRG 2 cut(s) 363, 383
Bsp1286I GDGCHC 2 cut(s) 519, 749
Bsp143I GATC 1 cut(s) 768
BspACI CCGC 1 cut(s) 664
BspANI GGCC 1 cut(s) 738
BspLI GGNNCC 5 cut(s) 286, 351, 352, 411, 645
BspT107I GGYRCC 1 cut(s) 284
BsrDI GCAATG 2 cut(s) 771, 783
BsrI ACTGG 3 cut(s) 157, 639, 797
BssECI CCNNGG 6 cut(s) 23, 252, 345, 362, 581, 733
BssMI GATC 1 cut(s) 768
BssNAI GTATAC 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 733
Bst1107I GTATAC 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 585, 621
Bst6I CTCTTC 1 cut(s) 687
BstC8I GCNNGC 5 cut(s) 6, 590, 594, 598, 628
BstDSI CCRYGG 1 cut(s) 581
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 2 cut(s) 388, 666
BstHHI GCGC 2 cut(s) 41, 602
BstKTI GATC 1 cut(s) 771
BstMBI GATC 1 cut(s) 768
BstMWI GCNNNNNNNGC 2 cut(s) 334, 744
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 2 cut(s) 19, 596
BstSCI CCNGG 2 cut(s) 22, 251
BstXI CCANNNNNNTGG 1 cut(s) 588
BstZ17I GTATAC 1 cut(s) 268
BsuRI GGCC 1 cut(s) 738
BtgI CCRYGG 1 cut(s) 581
BtsCI GGATG 2 cut(s) 388, 666
Cac8I GCNNGC 5 cut(s) 6, 590, 594, 598, 628
CfoI GCGC 2 cut(s) 41, 602
Cfr13I GGNCC 1 cut(s) 350
Csp6I GTAC 3 cut(s) 11, 168, 199
CspCI CAANNNNNGTGG 2 cut(s) 517, 552
CviAII CATG 5 cut(s) 16, 52, 185, 593, 676
CviQI GTAC 3 cut(s) 11, 168, 199
DpnI GATC 1 cut(s) 770
DpnII GATC 1 cut(s) 768
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 733
Eco47I GGWCC 1 cut(s) 350
Eco88I CYCGRG 2 cut(s) 363, 383
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 733
ErhI CCWWGG 1 cut(s) 733
FaeI CATG 5 cut(s) 19, 55, 188, 596, 679
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FaqI GGGAC 5 cut(s) 154, 163, 269, 336, 572
FatI CATG 5 cut(s) 15, 51, 184, 592, 675
FbaI TGATCA 1 cut(s) 768
FblI GTMKAC 1 cut(s) 267
FokI GGATG 2 cut(s) 375, 653
FspBI CTAG 3 cut(s) 281, 341, 488
FspI TGCGCA 1 cut(s) 601
GlaI GCGC 2 cut(s) 40, 601
GsaI CCCAGC 1 cut(s) 120
HaeIII GGCC 1 cut(s) 738
HapII CCGG 1 cut(s) 252
HhaI GCGC 2 cut(s) 41, 602
Hin1II CATG 5 cut(s) 19, 55, 188, 596, 679
Hin6I GCGC 2 cut(s) 39, 600
HinP1I GCGC 2 cut(s) 39, 600
HinfI GANTC 4 cut(s) 69, 125, 306, 560
HpaII CCGG 1 cut(s) 252
HphI GGTGA 2 cut(s) 12, 184
Hpy166II GTNNAC 3 cut(s) 13, 268, 528
Hpy188I TCNGA 3 cut(s) 206, 296, 482
Hpy188III TCNNGA 3 cut(s) 247, 353, 376
Hpy8I GTNNAC 3 cut(s) 13, 268, 528
Hpy99I CGWCG 2 cut(s) 482, 572
HpyAV CCTTC 2 cut(s) 477, 484
HpyCH4III ACNGT 2 cut(s) 585, 621
HpyCH4V TGCA 3 cut(s) 576, 626, 776
HpyF10VI GCNNNNNNNGC 2 cut(s) 334, 744
Hsp92II CATG 5 cut(s) 19, 55, 188, 596, 679
HspAI GCGC 2 cut(s) 39, 600
KflI GGGWCCC 1 cut(s) 350
Ksp22I TGATCA 1 cut(s) 768
Kzo9I GATC 1 cut(s) 768
LmnI GCTCC 4 cut(s) 342, 422, 643, 744
LweI GCATC 2 cut(s) 397, 675
MaeI CTAG 3 cut(s) 281, 341, 488
MaeIII GTNAC 2 cut(s) 18, 706
MalI GATC 1 cut(s) 770
MboI GATC 1 cut(s) 768
MboII GAAGA 4 cut(s) 505, 551, 554, 704
MfeI CAATTG 1 cut(s) 92
MhlI GDGCHC 2 cut(s) 519, 749
MluCI AATT 1 cut(s) 92
MlyI GAGTC 3 cut(s) 119, 300, 554
MmeI TCCRAC 3 cut(s) 460, 473, 694
MnlI CCTC 6 cut(s) 139, 340, 372, 455, 501, 532
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 2 cut(s) 437, 805
MslI CAYNNNNRTG 1 cut(s) 776
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 2 cut(s) 24, 253
MunI CAATTG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 334, 744
NciI CCSGG 1 cut(s) 253
NdeII GATC 1 cut(s) 768
NlaIII CATG 5 cut(s) 19, 55, 188, 596, 679
NlaIV GGNNCC 5 cut(s) 286, 351, 352, 411, 645
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 2 cut(s) 18, 706
NsbI TGCGCA 1 cut(s) 601
NspI RCATGY 2 cut(s) 19, 596
PaeI GCATGC 1 cut(s) 596
PciI ACATGT 1 cut(s) 15
PcsI WCGNNNNNNNCGW 2 cut(s) 94, 381
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 1 cut(s) 69
PleI GAGTC 3 cut(s) 119, 300, 554
PpsI GAGTC 3 cut(s) 119, 300, 554
PpuMI RGGWCCY 1 cut(s) 350
PscI ACATGT 1 cut(s) 15
Psp5II RGGWCCY 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 116
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 5 cut(s) 286, 351, 352, 411, 645
PspPI GGNCC 1 cut(s) 350
PspPPI RGGWCCY 1 cut(s) 350
RsaI GTAC 3 cut(s) 12, 169, 200
RsaNI GTAC 3 cut(s) 11, 168, 199
RseI CAYNNNNRTG 1 cut(s) 776
SaqAI TTAA 2 cut(s) 437, 805
Sau3AI GATC 1 cut(s) 768
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 3 cut(s) 119, 300, 554
ScrFI CCNGG 2 cut(s) 24, 253
SduI GDGCHC 2 cut(s) 519, 749
SetI ASST 7 cut(s) 197, 339, 419, 443, 501, 512, 554
SfaNI GCATC 2 cut(s) 397, 675
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 776
SphI GCATGC 1 cut(s) 596
Sse9I AATT 1 cut(s) 92
SsiI CCGC 1 cut(s) 664
SspMI CTAG 3 cut(s) 281, 341, 488
StyD4I CCNGG 2 cut(s) 22, 251
StyI CCWWGG 1 cut(s) 733
TaaI ACNGT 2 cut(s) 585, 621
TaqI TCGA 1 cut(s) 375
TasI AATT 1 cut(s) 92
TatI WGTACW 2 cut(s) 10, 198
TfiI GAWTC 1 cut(s) 69
Tru1I TTAA 2 cut(s) 437, 805
Tru9I TTAA 2 cut(s) 437, 805
TseFI GTSAC 2 cut(s) 18, 706
Tsp45I GTSAC 2 cut(s) 18, 706
TspDTI ATGAA 2 cut(s) 68, 201
TspGWI ACGGA 2 cut(s) 185, 422
VpaK11BI GGWCC 1 cut(s) 350
XagI CCTNNNNNAGG 1 cut(s) 344
XceI RCATGY 2 cut(s) 19, 596
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 3 cut(s) 281, 341, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.