Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013625

Physical Location & Seq

Genomic Coordinates Forward (+)

36881161 .. 36882030

Gene Structure 870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G430300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAGTACCCCGAAAGTAACTGAAGAGAAAAAGGAGCAAGGTGGAGTGGAAATCAAGGTGGTGGACACGGTTGATTATCGATCACCGGCAGGGGAAGACAAAAAACCCACAAAGGAGGAGGTGGAGGTGGTTCATGAGACCAAAGATGGGGCCAATTCAGGGACTGGAGCCGGCGGGGTCCTTGCTGGTGCAGCAGCTGCAGTTTCAAATGCCTTTCAATCCGCCAAGAATGCAGTTTCTGGCAGTGCCAAAGATCAGAAGACCGCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

91

Amino Acids

9.18

Weight (kDa)

5.81

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013625)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33780
malus_domestica	MD08G1092300.v1.1 MD08G1092400.v1.1 MD15G1076900.v1.1
prunus_persica	Prupe.1G430300_v2.0.a1
pyrus_communis	pycom08g07510
rosa_chinensis	RchiOBHm_Chr6g0308771
rosa_laevigata	RLG00000010620
rosa_multiflora	Rmu_sc0000638.1_g000002 Rmu_sc0000871.1_g000035 Rmu_sc0006892.1_g000001 Rmu_sc0009346.1_g000002 Rmu_sc0019189.1_g000004
rosa_samantha	Rh6AG423100 Rh6CG494300 Rh7AG006600 Rh7AG437900
rosa_wichuraiana	Rw6G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	174, 222, 264
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	2 cut(s)	147, 159
AgsI	TTSAA	2 cut(s)	207, 218
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	131
AlwNI	CAGNNNCTG	3 cut(s)	164, 197, 239
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	3 cut(s)	191, 194, 197
AspS9I	GGNCC	2 cut(s)	150, 178
AsuHPI	GGTGA	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	178
BbsI	GAAGAC	2 cut(s)	102, 266
BbvI	GCAGC	3 cut(s)	184, 203, 206
BccI	CCATC	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	3 cut(s)	192, 195, 198
BlsI	GCNGC	3 cut(s)	193, 196, 199
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	150, 178
BmiI	GGNNCC	3 cut(s)	151, 169, 179
BpiI	GAAGAC	2 cut(s)	102, 266
BpmI	CTGGAG	1 cut(s)	186
Bsa29I	ATCGAT	1 cut(s)	79
BsaI	GGTCTC	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 159
Bse118I	RCCGGY	2 cut(s)	85, 170
Bse1I	ACTGG	1 cut(s)	169
BseCI	ATCGAT	1 cut(s)	79
BseLI	CCNNNNNNNGG	2 cut(s)	147, 159
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	3 cut(s)	184, 203, 206
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	152
BshVI	ATCGAT	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	86, 171
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	2 cut(s)	147, 159
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	152
Bso31I	GGTCTC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	80, 253
BspACI	CCGC	3 cut(s)	174, 222, 264
BspANI	GGCC	1 cut(s)	152
BspDI	ATCGAT	1 cut(s)	79
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	3 cut(s)	151, 169, 179
BspMAI	CTGCAG	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	131
BsrFI	RCCGGY	2 cut(s)	85, 170
BsrI	ACTGG	1 cut(s)	169
BssAI	RCCGGY	2 cut(s)	85, 170
BssMI	GATC	2 cut(s)	80, 253
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	18
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	172
BstKTI	GATC	2 cut(s)	83, 256
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	2 cut(s)	80, 253
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 197, 230
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	184, 203, 206
BstV2I	GAAGAC	2 cut(s)	102, 266
Bsu15I	ATCGAT	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	152
BsuTUI	ATCGAT	1 cut(s)	79
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	172
CaiI	CAGNNNCTG	3 cut(s)	164, 197, 239
CciI	TCATGA	1 cut(s)	133
Cfr10I	RCCGGY	2 cut(s)	85, 170
Cfr13I	GGNCC	2 cut(s)	150, 178
ClaI	ATCGAT	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	3 cut(s)	152, 170, 197
CviKI_1	RGCY	3 cut(s)	152, 170, 197
CviQI	GTAC	1 cut(s)	6
DpnI	GATC	2 cut(s)	82, 255
DpnII	GATC	2 cut(s)	80, 253
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
EciI	GGCGGA	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	178
FaeI	CATG	1 cut(s)	137
FaiI	YATR	1 cut(s)	135
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	1 cut(s)	133
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	3 cut(s)	192, 195, 198
Fsp4HI	GCNGC	3 cut(s)	192, 195, 198
GluI	GCNGC	3 cut(s)	192, 195, 198
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	2 cut(s)	86, 171
Hin1II	CATG	1 cut(s)	137
HpaII	CCGG	2 cut(s)	86, 171
HphI	GGTGA	1 cut(s)	75
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	3 cut(s)	191, 200, 233
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 197, 230
Hsp92II	CATG	1 cut(s)	137
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	80, 253
LmnI	GCTCC	2 cut(s)	34, 167
LpnPI	CCDG	7 cut(s)	75, 99, 144, 150, 171, 184, 225
Lsp1109I	GCAGC	3 cut(s)	184, 203, 206
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	2 cut(s)	82, 255
MboI	GATC	2 cut(s)	80, 253
MboII	GAAGA	3 cut(s)	35, 107, 271
MluCI	AATT	1 cut(s)	154
MnlI	CCTC	3 cut(s)	109, 112, 118
MroNI	GCCGGC	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	2 cut(s)	86, 171
Mva1269I	GAATGC	1 cut(s)	235
MwoI	GCNNNNNNNGC	3 cut(s)	191, 197, 230
NaeI	GCCGGC	1 cut(s)	172
NdeII	GATC	2 cut(s)	80, 253
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	3 cut(s)	151, 169, 179
PagI	TCATGA	1 cut(s)	133
PctI	GAATGC	1 cut(s)	235
PdiI	GCCGGC	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	193, 196, 199
PpuMI	RGGWCCY	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	178
PspN4I	GGNNCC	3 cut(s)	151, 169, 179
PspPI	GGNCC	2 cut(s)	150, 178
PspPPI	RGGWCCY	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	202
PstNI	CAGNNNCTG	3 cut(s)	164, 197, 239
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SatI	GCNGC	3 cut(s)	192, 195, 198
Sau3AI	GATC	2 cut(s)	80, 253
Sau96I	GGNCC	2 cut(s)	150, 178
SetI	ASST	5 cut(s)	43, 60, 123, 129, 199
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	178
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	3 cut(s)	174, 222, 264
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	79
TasI	AATT	1 cut(s)	154
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	3 cut(s)	191, 194, 197
TspDTI	ATGAA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.