Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016275

Physical Location & Seq

Genomic Coordinates Forward (+)

25893282 .. 25894606

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGATGCAAATATTGCCATGAACATGTGTTCGTCTTCCACTTCTACATCCGACTCTTCTTCCTCCGAGTCCTCCCAACCCAGGAACCCCAACAAGGCTGAGAGGATCAAGGGCCCGTGGAGCGCCGAGGAGGACCGGGTTCTCACCCGCCTCGTCGACCGCTACGGTCCCAGAAACTGGTCTTTGATTAGCCGTTACATTAAGGGCCGGTCGGGCAAGTCCTGCAGGCTTAGGTGGTGCAACCAGCTCAGCCCCACCGTCCAGCACCGTCCCTTTTCCCAAGCCGAAGACGAAGCCATCCTCGCCGCACACGCCCGCTACGGCAACCGGTGGGCCACCATTGCACGGTTGCTCCCTGGGCGGACCGACAATGCCGTCAAGAACCACTGGAACTCGACCCTAAAGAGAAGGGTGAGAGAACCACAAGAACATCACGGTGAGGGTAATATCGGCAATGCAGCTATTGAGGTGATGATGTTGGGTAATGGTAGTAGCAGTGCTTCAGCTGCCTCGGGGCGTAATGGGTCCATGGATTTGGATGACCCGTTGACGGAGTTGACTCTGGCGACGCCGGGGATAGGTAGCTCTGTGGTGTCTGCGTCGGAACAACAACACCATCATCGGAGCAGCAGCGAGAGCTTTCCTCCGGCGGGGTTTTGGGATGTGATGAGGGGTGTGATAGCAAGGGAAGTTAGGGATTACGTGAGCTCGTCCTATACTGAAACTTCTGGGCTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

247

Amino Acids

27.05

Weight (kDa)

8.86

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	37 - 83	1.7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	40 - 98	4.8e-17	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	90 - 133	1.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	92 - 139	1.7e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35010
malus_domestica	MD08G1107400.v1.1 MD15G1088000.v1.1
prunus_persica	Prupe.1G441700_v2.0.a1
pyrus_communis	pycom08g08930 pycom15g08260
rosa_chinensis	RchiOBHm_Chr6g0307001
rosa_laevigata	RLG00000010748
rosa_roxburghii	Rroxscaffold_7G00161290
rosa_rugosa	Rorug06G0354900
rosa_samantha	Rh6AG466700 Rh6BG434300 Rh6CG481700 Rh6DG468000
rosa_wichuraiana	Rw6G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AccB7I	CCANNNNNTGG	1 cut(s)	177
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	6 cut(s)	148, 160, 306, 316, 361, 650
AclWI	GGATC	1 cut(s)	113
AcuI	CTGAAG	1 cut(s)	486
AcyI	GRCGYC	1 cut(s)	569
AfiI	CCNNNNNNNGG	7 cut(s)	81, 94, 177, 345, 550, 578, 650
AflIII	ACRYGT	1 cut(s)	24
AgeI	ACCGGT	1 cut(s)	327
AjnI	CCWGG	2 cut(s)	80, 355
AluBI	AGCT	6 cut(s)	247, 461, 506, 585, 639, 708
AluI	AGCT	6 cut(s)	247, 461, 506, 585, 639, 708
Alw21I	GWGCWC	1 cut(s)	710
AlwI	GGATC	1 cut(s)	113
AlwNI	CAGNNNCTG	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	511
AoxI	GGCC	3 cut(s)	112, 205, 333
ApaI	GGGCCC	1 cut(s)	116
ApeKI	GCWGC	4 cut(s)	458, 506, 627, 630
AsiGI	ACCGGT	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	8 cut(s)	112, 113, 133, 167, 205, 333, 363, 525
AsuC2I	CCSGG	2 cut(s)	137, 573
AsuHPI	GGTGA	4 cut(s)	136, 424, 449, 481
AvaI	CYCGRG	1 cut(s)	511
AvaII	GGWCC	4 cut(s)	133, 167, 363, 525
BaeGI	GKGCMC	1 cut(s)	116
BanII	GRGCYC	2 cut(s)	116, 710
BarI	GAAGNNNNNNTAC	2 cut(s)	484, 516
BbsI	GAAGAC	2 cut(s)	27, 294
Bbv12I	GWGCWC	1 cut(s)	710
BbvI	GCAGC	4 cut(s)	470, 493, 639, 642
BccI	CCATC	2 cut(s)	305, 624
BceAI	ACGGC	3 cut(s)	177, 337, 359
BciT130I	CCWGG	2 cut(s)	82, 357
BcnI	CCSGG	2 cut(s)	137, 573
BfmI	CTRYAG	1 cut(s)	223
BfoI	RGCGCY	1 cut(s)	126
BglI	GCCNNNNNGGC	1 cut(s)	213
BisI	GCNGC	5 cut(s)	306, 459, 507, 628, 631
BlpI	GCTNAGC	1 cut(s)	248
BlsI	GCNGC	5 cut(s)	307, 460, 508, 629, 632
Bme1390I	CCNGG	4 cut(s)	82, 137, 357, 573
Bme18I	GGWCC	4 cut(s)	133, 167, 363, 525
BmeT110I	CYCGRG	1 cut(s)	511
BmgT120I	GGNCC	8 cut(s)	112, 113, 133, 167, 205, 333, 363, 525
BmiI	GGNNCC	4 cut(s)	86, 114, 169, 526
BmrFI	CCNGG	4 cut(s)	82, 137, 357, 573
BpiI	GAAGAC	2 cut(s)	27, 294
BplI	GAGNNNNNCTC	2 cut(s)	628, 660
Bpu10I	CCTNAGC	1 cut(s)	230
Bpu1102I	GCTNAGC	1 cut(s)	248
BpuMI	CCSGG	2 cut(s)	137, 573
BsaAI	YACGTR	1 cut(s)	703
BsaHI	GRCGYC	1 cut(s)	569
BsaJI	CCNNGG	8 cut(s)	80, 116, 126, 355, 356, 510, 528, 572
BsaWI	WCCGGW	1 cut(s)	327
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	7 cut(s)	81, 94, 177, 345, 550, 578, 650
Bse118I	RCCGGY	2 cut(s)	207, 327
Bse1I	ACTGG	2 cut(s)	182, 392
Bse3DI	GCAATG	2 cut(s)	339, 460
BseBI	CCWGG	2 cut(s)	82, 357
BseDI	CCNNGG	8 cut(s)	80, 116, 126, 355, 356, 510, 528, 572
BseGI	GGATG	5 cut(s)	10, 47, 297, 544, 667
BseLI	CCNNNNNNNGG	7 cut(s)	81, 94, 177, 345, 550, 578, 650
BseMI	GCAATG	2 cut(s)	339, 460
BseMII	CTCAG	2 cut(s)	90, 262
BseNI	ACTGG	2 cut(s)	182, 392
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	4 cut(s)	470, 493, 639, 642
Bsh1285I	CGRYCG	2 cut(s)	160, 212
BshFI	GGCC	3 cut(s)	114, 207, 335
BshTI	ACCGGT	1 cut(s)	327
BsiEI	CGRYCG	2 cut(s)	160, 212
BsiHKAI	GWGCWC	1 cut(s)	710
BsiHKCI	CYCGRG	1 cut(s)	511
BsiSI	CCGG	5 cut(s)	136, 208, 328, 572, 647
BslFI	GGGAC	2 cut(s)	153, 255
BslI	CCNNNNNNNGG	7 cut(s)	81, 94, 177, 345, 550, 578, 650
BsmFI	GGGAC	2 cut(s)	153, 255
BsnI	GGCC	3 cut(s)	114, 207, 335
BsoBI	CYCGRG	1 cut(s)	511
Bsp120I	GGGCCC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	116, 710
Bsp143I	GATC	1 cut(s)	105
Bsp1720I	GCTNAGC	1 cut(s)	248
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	6 cut(s)	148, 160, 306, 316, 361, 650
BspANI	GGCC	3 cut(s)	114, 207, 335
BspCNI	CTCAG	2 cut(s)	91, 261
BspLI	GGNNCC	4 cut(s)	86, 114, 169, 526
BspMAI	CTGCAG	1 cut(s)	227
BspPI	GGATC	1 cut(s)	113
BsrDI	GCAATG	2 cut(s)	339, 460
BsrFI	RCCGGY	2 cut(s)	207, 327
BsrI	ACTGG	2 cut(s)	182, 392
BssAI	RCCGGY	2 cut(s)	207, 327
BssECI	CCNNGG	8 cut(s)	80, 116, 126, 355, 356, 510, 528, 572
BssMI	GATC	1 cut(s)	105
BssNI	GRCGYC	1 cut(s)	569
BssT1I	CCWWGG	1 cut(s)	528
Bst2UI	CCWGG	2 cut(s)	82, 357
Bst4CI	ACNGT	5 cut(s)	167, 259, 269, 348, 437
Bst6I	CTCTTC	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	569
BstAPI	GCANNNNNTGC	2 cut(s)	14, 222
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	2 cut(s)	227, 316
BstDEI	CTNAG	3 cut(s)	99, 230, 248
BstDSI	CCRYGG	2 cut(s)	116, 528
BstF5I	GGATG	5 cut(s)	10, 47, 297, 544, 667
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	105
BstMCI	CGRYCG	2 cut(s)	160, 212
BstNI	CCWGG	2 cut(s)	82, 357
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	4 cut(s)	80, 135, 355, 571
BstSFI	CTRYAG	1 cut(s)	223
BstSLI	GKGCMC	1 cut(s)	116
BstV1I	GCAGC	4 cut(s)	470, 493, 639, 642
BstV2I	GAAGAC	2 cut(s)	27, 294
BstXI	CCANNNNNNTGG	1 cut(s)	535
BsuRI	GGCC	3 cut(s)	114, 207, 335
BtgI	CCRYGG	2 cut(s)	116, 528
BtsCI	GGATG	5 cut(s)	10, 47, 297, 544, 667
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	2 cut(s)	385, 502
Cac8I	GCNNGC	2 cut(s)	227, 316
CaiI	CAGNNNCTG	1 cut(s)	177
CfoI	GCGC	1 cut(s)	125
Cfr10I	RCCGGY	2 cut(s)	207, 327
Cfr13I	GGNCC	8 cut(s)	112, 113, 133, 167, 205, 333, 363, 525
CpoI	CGGWCCG	1 cut(s)	363
CseI	GACGC	2 cut(s)	577, 588
CspAI	ACCGGT	1 cut(s)	327
CspI	CGGWCCG	1 cut(s)	363
CviAII	CATG	3 cut(s)	19, 25, 529
DdeI	CTNAG	3 cut(s)	99, 230, 248
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EciI	GGCGGA	1 cut(s)	376
Ecl136II	GAGCTC	1 cut(s)	708
Eco130I	CCWWGG	1 cut(s)	528
Eco24I	GRGCYC	2 cut(s)	116, 710
Eco47I	GGWCC	4 cut(s)	133, 167, 363, 525
Eco53kI	GAGCTC	1 cut(s)	708
Eco57I	CTGAAG	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	708
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	80, 355
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	2 cut(s)	116, 710
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	3 cut(s)	22, 28, 532
FaiI	YATR	4 cut(s)	20, 26, 530, 717
FaqI	GGGAC	2 cut(s)	153, 255
FatI	CATG	3 cut(s)	18, 24, 528
FauI	CCCGC	3 cut(s)	155, 323, 643
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	5 cut(s)	306, 459, 507, 628, 631
FokI	GGATG	5 cut(s)	17, 34, 284, 551, 674
FriOI	GRGCYC	2 cut(s)	116, 710
Fsp4HI	GCNGC	5 cut(s)	306, 459, 507, 628, 631
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	5 cut(s)	306, 459, 507, 628, 631
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	114, 207, 335
HapII	CCGG	5 cut(s)	136, 208, 328, 572, 647
HgaI	GACGC	2 cut(s)	577, 588
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	569
Hin1II	CATG	3 cut(s)	22, 28, 532
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	3 cut(s)	157, 549, 558
HindII	GTYRAC	3 cut(s)	157, 549, 558
HinfI	GANTC	3 cut(s)	53, 68, 559
HpaII	CCGG	5 cut(s)	136, 208, 328, 572, 647
HphI	GGTGA	4 cut(s)	136, 424, 449, 481
Hpy166II	GTNNAC	3 cut(s)	157, 549, 558
Hpy188I	TCNGA	4 cut(s)	52, 67, 604, 624
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	3 cut(s)	157, 549, 558
Hpy99I	CGWCG	3 cut(s)	158, 571, 604
HpyAV	CCTTC	1 cut(s)	402
HpyCH4III	ACNGT	5 cut(s)	167, 259, 269, 348, 437
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	5 cut(s)	8, 225, 240, 344, 458
HpyF3I	CTNAG	3 cut(s)	99, 230, 248
HpySE526I	ACGT	1 cut(s)	702
Hsp92I	GRCGYC	1 cut(s)	569
Hsp92II	CATG	3 cut(s)	22, 28, 532
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	105
LmnI	GCTCC	3 cut(s)	120, 357, 624
Lsp1109I	GCAGC	4 cut(s)	470, 493, 639, 642
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	4 cut(s)	27, 48, 51, 299
MhlI	GDGCHC	2 cut(s)	116, 710
MlyI	GAGTC	3 cut(s)	47, 77, 553
MmeI	TCCRAC	2 cut(s)	75, 582
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	2 cut(s)	23, 435
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	5 cut(s)	136, 208, 328, 572, 647
MspR9I	CCNGG	4 cut(s)	82, 137, 357, 573
MvaI	CCWGG	2 cut(s)	82, 357
NciI	CCSGG	2 cut(s)	137, 573
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	3 cut(s)	22, 28, 532
NlaIV	GGNNCC	4 cut(s)	86, 114, 169, 526
NmeAIII	GCCGAG	1 cut(s)	151
NspI	RCATGY	1 cut(s)	28
PasI	CCCWGGG	1 cut(s)	356
PciI	ACATGT	1 cut(s)	24
PflMI	CCANNNNNTGG	1 cut(s)	177
PinAI	ACCGGT	1 cut(s)	327
PkrI	GCNGC	5 cut(s)	307, 460, 508, 629, 632
PleI	GAGTC	3 cut(s)	47, 76, 553
PpsI	GAGTC	3 cut(s)	47, 76, 553
Ppu21I	YACGTR	1 cut(s)	703
PscI	ACATGT	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	710
Psp6I	CCWGG	2 cut(s)	80, 355
PspGI	CCWGG	2 cut(s)	80, 355
PspN4I	GGNNCC	4 cut(s)	86, 114, 169, 526
PspOMI	GGGCCC	1 cut(s)	112
PspPI	GGNCC	8 cut(s)	112, 113, 133, 167, 205, 333, 363, 525
PstI	CTGCAG	1 cut(s)	227
PstNI	CAGNNNCTG	1 cut(s)	177
PvuII	CAGCTG	1 cut(s)	506
RseI	CAYNNNNRTG	2 cut(s)	23, 435
Rsr2I	CGGWCCG	1 cut(s)	363
RsrII	CGGWCCG	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	710
SalI	GTCGAC	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	5 cut(s)	306, 459, 507, 628, 631
Sau3AI	GATC	1 cut(s)	105
Sau96I	GGNCC	8 cut(s)	112, 113, 133, 167, 205, 333, 363, 525
SbfI	CCTGCAGG	1 cut(s)	227
SchI	GAGTC	3 cut(s)	47, 77, 553
ScrFI	CCNGG	4 cut(s)	82, 137, 357, 573
SdaI	CCTGCAGG	1 cut(s)	227
SduI	GDGCHC	2 cut(s)	116, 710
SfcI	CTRYAG	1 cut(s)	223
SinI	GGWCC	4 cut(s)	133, 167, 363, 525
SmiMI	CAYNNNNRTG	2 cut(s)	23, 435
Sse8387I	CCTGCAGG	1 cut(s)	227
SsiI	CCGC	6 cut(s)	148, 160, 306, 316, 361, 650
SspI	AATATT	1 cut(s)	13
SstI	GAGCTC	1 cut(s)	710
StyD4I	CCNGG	4 cut(s)	80, 135, 355, 571
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	5 cut(s)	167, 259, 269, 348, 437
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	2 cut(s)	156, 395
TaqII	GACCGA	1 cut(s)	380
TauI	GCSGC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	392, 502
TseI	GCWGC	4 cut(s)	458, 506, 627, 630
TspDTI	ATGAA	2 cut(s)	35, 725
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	2 cut(s)	392, 502
Van91I	CCANNNNNTGG	1 cut(s)	177
VpaK11BI	GGWCC	4 cut(s)	133, 167, 363, 525
XceI	RCATGY	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.