Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016275

Physical Location & Seq

Genomic Coordinates Forward (+)

6129229 .. 6129945

Gene Structure 717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1088000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAAGCATTGAATATTTGCTCGTCTTCTGCTTCGTCTTCCGACACGTCCTCGTCGGAGTCTTCTCTGACGAGAAATCCCAATAAGCCCGAACGAATCAAGGGCCCGTGGAGCGCTGAGGAGGACCGGGTCTTGACCCGGCTTGTCGAGCGCTACGGGCCTAGAAACTGGTCATTGATAAGCCGGTATATAAAGGGACGGTCCGGGAAGTCTTGCAGGCTAAGGTGGTGCAACCAGCTGAGCCCGAGCGTCCAGCATCGATCCTTTTCGCAGGCCGAGGACGAGACCATCTTGGCCGCACAGGCCCGGTTCGGAAACAGATGGGCCACCATTGCGCGCCTGCTTCCGGGTCGGACCGACAACGCGGTGAAAAATCACTGGAACTCGACGTTGAAGCGGAGGGTGAGGGGAGATCAACTAACGGAGGGTGGCAGTTTTCTTGGAGGCGGCGGCAATGTGGGTAGCAATGAGGGGATGAGCACGAATTCGGTTTCCGGATCTTTGGTTAATGGGTCGATGGAGTTTGACCCGTTGACGGAGTTGACTTTGGCACCGCCGGGGATTGGTAGCGGAAGCGGCGGGGCGATGGTGGCAGAGCAGCGGAGGAATAATGAGAGTGTGCCGGCGGGGTTTTGGGACGCGATGAGGGATGTTATCGCTAGGGAGGTTAGAGATTACGTGGCGACAACATTTTCAGAGCCTTCGGGGCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

239

Amino Acids

25.87

Weight (kDa)

9.18

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	34 - 80	5.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	37 - 96	3.1e-17	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	88 - 130	1.4e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	89 - 138	1.4e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35010
malus_domestica	MD08G1107400.v1.1 MD15G1088000.v1.1
prunus_persica	Prupe.1G441700_v2.0.a1
pyrus_communis	pycom08g08930 pycom15g08260
rosa_chinensis	RchiOBHm_Chr6g0307001
rosa_laevigata	RLG00000010748
rosa_roxburghii	Rroxscaffold_7G00161290
rosa_rugosa	Rorug06G0354900
rosa_samantha	Rh6AG466700 Rh6BG434300 Rh6CG481700 Rh6DG468000
rosa_wichuraiana	Rw6G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	550
AccII	CGCG	3 cut(s)	337, 365, 641
AccIII	TCCGGA	1 cut(s)	494
AclWI	GGATC	2 cut(s)	255, 505
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	484
AfeI	AGCGCT	2 cut(s)	115, 152
AfiI	CCNNNNNNNGG	3 cut(s)	346, 535, 563
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	13, 394
AjiI	CACGTC	1 cut(s)	48
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	2 cut(s)	255, 505
Ama87I	CYCGRG	1 cut(s)	244
Aor13HI	TCCGGA	1 cut(s)	494
Aor51HI	AGCGCT	2 cut(s)	115, 152
AoxI	GGCC	6 cut(s)	103, 158, 273, 294, 303, 324
ApaI	GGGCCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	598
ApoI	RAATTY	1 cut(s)	484
AspLEI	GCGC	4 cut(s)	116, 153, 337, 339
AspS9I	GGNCC	8 cut(s)	103, 104, 124, 158, 201, 304, 324, 354
AsuC2I	CCSGG	6 cut(s)	128, 139, 205, 307, 348, 558
AsuHPI	GGTGA	2 cut(s)	379, 415
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	3 cut(s)	124, 201, 354
BaeGI	GKGCMC	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	550
BanII	GRGCYC	2 cut(s)	107, 245
BbsI	GAAGAC	3 cut(s)	18, 30, 54
Bbv12I	GWGCWC	1 cut(s)	482
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	4 cut(s)	296, 315, 511, 580
BcnI	CCSGG	6 cut(s)	128, 139, 205, 307, 348, 558
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	2 cut(s)	162, 660
BfoI	RGCGCY	2 cut(s)	117, 154
BglI	GCCNNNNNGGC	2 cut(s)	302, 706
BisI	GCNGC	5 cut(s)	297, 448, 451, 577, 599
BlpI	GCTNAGC	1 cut(s)	239
BlsI	GCNGC	5 cut(s)	298, 449, 452, 578, 600
Bme1390I	CCNGG	6 cut(s)	128, 139, 205, 307, 348, 558
Bme18I	GGWCC	3 cut(s)	124, 201, 354
BmeT110I	CYCGRG	1 cut(s)	244
BmgBI	CACGTC	1 cut(s)	48
BmgT120I	GGNCC	8 cut(s)	103, 104, 124, 158, 201, 304, 324, 354
BmiI	GGNNCC	2 cut(s)	105, 552
BmrFI	CCNGG	6 cut(s)	128, 139, 205, 307, 348, 558
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	3 cut(s)	18, 30, 54
Bpu10I	CCTNAGC	2 cut(s)	117, 221
Bpu1102I	GCTNAGC	1 cut(s)	239
BpuMI	CCSGG	6 cut(s)	128, 139, 205, 307, 348, 558
Bsa29I	ATCGAT	1 cut(s)	259
BsaAI	YACGTR	1 cut(s)	679
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	3 cut(s)	107, 276, 557
BsaWI	WCCGGW	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 535, 563
Bse118I	RCCGGY	2 cut(s)	183, 622
Bse1I	ACTGG	2 cut(s)	173, 383
Bse3DI	GCAATG	3 cut(s)	330, 460, 472
BseAI	TCCGGA	1 cut(s)	494
BseCI	ATCGAT	1 cut(s)	259
BseDI	CCNNGG	3 cut(s)	107, 276, 557
BseGI	GGATG	2 cut(s)	480, 655
BseLI	CCNNNNNNNGG	3 cut(s)	346, 535, 563
BseMI	GCAATG	3 cut(s)	330, 460, 472
BseMII	CTCAG	2 cut(s)	108, 230
BseNI	ACTGG	2 cut(s)	173, 383
BsePI	GCGCGC	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	610
Bsh1236I	CGCG	3 cut(s)	337, 365, 641
BshFI	GGCC	6 cut(s)	105, 160, 275, 296, 305, 326
BshNI	GGYRCC	1 cut(s)	550
BshVI	ATCGAT	1 cut(s)	259
BsiHKAI	GWGCWC	1 cut(s)	482
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	9 cut(s)	127, 139, 184, 204, 307, 347, 495, 557, 623
BslFI	GGGAC	2 cut(s)	210, 650
BslI	CCNNNNNNNGG	3 cut(s)	346, 535, 563
BsmAI	GTCTC	1 cut(s)	278
BsmFI	GGGAC	2 cut(s)	210, 650
BsnI	GGCC	6 cut(s)	105, 160, 275, 296, 305, 326
Bso31I	GGTCTC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	244
Bsp120I	GGGCCC	1 cut(s)	103
Bsp1286I	GDGCHC	3 cut(s)	107, 245, 482
Bsp13I	TCCGGA	1 cut(s)	494
Bsp143I	GATC	3 cut(s)	260, 412, 497
Bsp1720I	GCTNAGC	1 cut(s)	239
BspANI	GGCC	6 cut(s)	105, 160, 275, 296, 305, 326
BspCNI	CTCAG	2 cut(s)	109, 231
BspDI	ATCGAT	1 cut(s)	259
BspEI	TCCGGA	1 cut(s)	494
BspFNI	CGCG	3 cut(s)	337, 365, 641
BspLI	GGNNCC	2 cut(s)	105, 552
BspPI	GGATC	2 cut(s)	255, 505
BspT107I	GGYRCC	1 cut(s)	550
BspTNI	GGTCTC	1 cut(s)	278
BsrDI	GCAATG	3 cut(s)	330, 460, 472
BsrFI	RCCGGY	2 cut(s)	183, 622
BsrI	ACTGG	2 cut(s)	173, 383
BssAI	RCCGGY	2 cut(s)	183, 622
BssECI	CCNNGG	3 cut(s)	107, 276, 557
BssHII	GCGCGC	1 cut(s)	335
BssMI	GATC	3 cut(s)	260, 412, 497
Bst4CI	ACNGT	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	679
BstC8I	GCNNGC	5 cut(s)	218, 273, 337, 341, 624
BstDEI	CTNAG	3 cut(s)	117, 221, 239
BstDSI	CCRYGG	1 cut(s)	107
BstF5I	GGATG	2 cut(s)	480, 655
BstFNI	CGCG	3 cut(s)	337, 365, 641
BstH2I	RGCGCY	2 cut(s)	117, 154
BstHHI	GCGC	4 cut(s)	116, 153, 337, 339
BstKTI	GATC	3 cut(s)	263, 415, 500
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	3 cut(s)	260, 412, 497
BstMWI	GCNNNNNNNGC	8 cut(s)	111, 148, 157, 302, 332, 576, 590, 706
BstSCI	CCNGG	6 cut(s)	126, 137, 203, 305, 346, 556
BstSLI	GKGCMC	1 cut(s)	107
BstUI	CGCG	3 cut(s)	337, 365, 641
BstV1I	GCAGC	1 cut(s)	610
BstV2I	GAAGAC	3 cut(s)	18, 30, 54
BstX2I	RGATCY	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	497
Bsu15I	ATCGAT	1 cut(s)	259
BsuRI	GGCC	6 cut(s)	105, 160, 275, 296, 305, 326
BsuTUI	ATCGAT	1 cut(s)	259
BtgI	CCRYGG	1 cut(s)	107
BtgZI	GCGATG	2 cut(s)	599, 656
BtrI	CACGTC	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	480, 655
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	5 cut(s)	218, 273, 337, 341, 624
CfoI	GCGC	4 cut(s)	116, 153, 337, 339
Cfr10I	RCCGGY	2 cut(s)	183, 622
Cfr13I	GGNCC	8 cut(s)	103, 104, 124, 158, 201, 304, 324, 354
ClaI	ATCGAT	1 cut(s)	259
CpoI	CGGWCCG	2 cut(s)	201, 354
CseI	GACGC	2 cut(s)	238, 647
CspI	CGGWCCG	2 cut(s)	201, 354
DdeI	CTNAG	3 cut(s)	117, 221, 239
DpnI	GATC	3 cut(s)	262, 414, 499
DpnII	GATC	3 cut(s)	260, 412, 497
EaeI	YGGCCR	1 cut(s)	294
Eco24I	GRGCYC	2 cut(s)	107, 245
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	3 cut(s)	124, 201, 354
Eco47III	AGCGCT	2 cut(s)	115, 152
Eco88I	CYCGRG	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	484
EcoT38I	GRGCYC	2 cut(s)	107, 245
FaiI	YATR	2 cut(s)	189, 191
FaqI	GGGAC	2 cut(s)	210, 650
FauI	CCCGC	2 cut(s)	572, 619
Fnu4HI	GCNGC	5 cut(s)	297, 448, 451, 577, 599
FokI	GGATG	2 cut(s)	487, 662
FriOI	GRGCYC	2 cut(s)	107, 245
Fsp4HI	GCNGC	5 cut(s)	297, 448, 451, 577, 599
FspBI	CTAG	2 cut(s)	162, 660
GlaI	GCGC	4 cut(s)	115, 152, 336, 338
GluI	GCNGC	5 cut(s)	297, 448, 451, 577, 599
HaeII	RGCGCY	2 cut(s)	117, 154
HaeIII	GGCC	6 cut(s)	105, 160, 275, 296, 305, 326
HapII	CCGG	9 cut(s)	127, 139, 184, 204, 307, 347, 495, 557, 623
HgaI	GACGC	2 cut(s)	238, 647
HhaI	GCGC	4 cut(s)	116, 153, 337, 339
Hin6I	GCGC	4 cut(s)	114, 151, 335, 337
HinP1I	GCGC	4 cut(s)	114, 151, 335, 337
HincII	GTYRAC	2 cut(s)	534, 543
HindII	GTYRAC	2 cut(s)	534, 543
HinfI	GANTC	2 cut(s)	59, 96
HpaII	CCGG	9 cut(s)	127, 139, 184, 204, 307, 347, 495, 557, 623
HphI	GGTGA	2 cut(s)	379, 415
Hpy166II	GTNNAC	2 cut(s)	534, 543
Hpy188I	TCNGA	6 cut(s)	43, 58, 69, 314, 354, 697
Hpy188III	TCNNGA	2 cut(s)	133, 495
Hpy8I	GTNNAC	2 cut(s)	534, 543
Hpy99I	CGWCG	2 cut(s)	58, 391
HpyAV	CCTTC	1 cut(s)	711
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4IV	ACGT	3 cut(s)	47, 389, 678
HpyCH4V	TGCA	2 cut(s)	216, 231
HpyF10VI	GCNNNNNNNGC	8 cut(s)	111, 148, 157, 302, 332, 576, 590, 706
HpyF3I	CTNAG	3 cut(s)	117, 221, 239
HpySE526I	ACGT	3 cut(s)	47, 389, 678
HspAI	GCGC	4 cut(s)	114, 151, 335, 337
Kpn2I	TCCGGA	1 cut(s)	494
KroI	GCCGGC	1 cut(s)	622
KroNI	GCCGGC	1 cut(s)	624
Kzo9I	GATC	3 cut(s)	260, 412, 497
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	1 cut(s)	610
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	162, 660
MaeII	ACGT	3 cut(s)	47, 389, 678
MalI	GATC	3 cut(s)	262, 414, 499
MboI	GATC	3 cut(s)	260, 412, 497
MboII	GAAGA	3 cut(s)	18, 30, 54
MflI	RGATCY	1 cut(s)	497
MhlI	GDGCHC	3 cut(s)	107, 245, 482
MluCI	AATT	1 cut(s)	484
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	3 cut(s)	36, 66, 332
MroI	TCCGGA	1 cut(s)	494
MroNI	GCCGGC	1 cut(s)	622
MseI	TTAA	1 cut(s)	507
MspA1I	CMGCKG	2 cut(s)	238, 601
MspI	CCGG	9 cut(s)	127, 139, 184, 204, 307, 347, 495, 557, 623
MspR9I	CCNGG	6 cut(s)	128, 139, 205, 307, 348, 558
MvnI	CGCG	3 cut(s)	337, 365, 641
MwoI	GCNNNNNNNGC	8 cut(s)	111, 148, 157, 302, 332, 576, 590, 706
NaeI	GCCGGC	1 cut(s)	624
NciI	CCSGG	6 cut(s)	128, 139, 205, 307, 348, 558
NdeII	GATC	3 cut(s)	260, 412, 497
NgoMIV	GCCGGC	1 cut(s)	622
NlaIV	GGNNCC	2 cut(s)	105, 552
NmeAIII	GCCGAG	1 cut(s)	301
PauI	GCGCGC	1 cut(s)	335
PdiI	GCCGGC	1 cut(s)	624
PfeI	GAWTC	1 cut(s)	96
PflFI	GACNNNGTC	1 cut(s)	128
PfoI	TCCNGGA	1 cut(s)	203
PkrI	GCNGC	5 cut(s)	298, 449, 452, 578, 600
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Ppu21I	YACGTR	1 cut(s)	679
PspN4I	GGNNCC	2 cut(s)	105, 552
PspOMI	GGGCCC	1 cut(s)	103
PspPI	GGNCC	8 cut(s)	103, 104, 124, 158, 201, 304, 324, 354
PsuI	RGATCY	1 cut(s)	497
PsyI	GACNNNGTC	1 cut(s)	128
PteI	GCGCGC	1 cut(s)	335
PvuII	CAGCTG	1 cut(s)	238
Rsr2I	CGGWCCG	2 cut(s)	201, 354
RsrII	CGGWCCG	2 cut(s)	201, 354
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	5 cut(s)	297, 448, 451, 577, 599
Sau3AI	GATC	3 cut(s)	260, 412, 497
Sau96I	GGNCC	8 cut(s)	103, 104, 124, 158, 201, 304, 324, 354
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	6 cut(s)	128, 139, 205, 307, 348, 558
SduI	GDGCHC	3 cut(s)	107, 245, 482
SetI	ASST	6 cut(s)	50, 227, 240, 392, 669, 681
SfaNI	GCATC	1 cut(s)	265
SfiI	GGCCNNNNNGGCC	1 cut(s)	302
SinI	GGWCC	3 cut(s)	124, 201, 354
Sse9I	AATT	1 cut(s)	484
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	2 cut(s)	162, 660
StyD4I	CCNGG	6 cut(s)	126, 137, 203, 305, 346, 556
TaaI	ACNGT	1 cut(s)	201
TaiI	ACGT	3 cut(s)	50, 392, 681
TaqI	TCGA	4 cut(s)	147, 259, 386, 515
TaqII	GACCGA	1 cut(s)	371
TasI	AATT	1 cut(s)	484
TauI	GCSGC	4 cut(s)	299, 450, 453, 579
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	1 cut(s)	383
TseI	GCWGC	1 cut(s)	598
TspGWI	ACGGA	2 cut(s)	437, 551
TspRI	CASTG	1 cut(s)	383
Tth111I	GACNNNGTC	1 cut(s)	128
VpaK11BI	GGWCC	3 cut(s)	124, 201, 354
XapI	RAATTY	1 cut(s)	484
XspI	CTAG	2 cut(s)	162, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.