Rh6CG481700
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
64831254 .. 64832030
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG481700.1

Sequence Viewer

Length: 777 bp
ATGGATGCAAATATTGCCATGAATATGTGCTCTTCTTCTACTTCTACCTCCGACTCTTCTTCCTCGGAGTCCTCGCAGCCCAGAAATCCCAACAAGGCCGAGAGAATCAAGGGCCCATGGAGCGCCGAGGAGGACCGGGTTCTCACCCGCCTCGTCGAGCGCTACGGCCCCAGAAATTGGTCTTTGATTAGCCGCTACATTAAGGGTCGCTCGGGCAAGTCCTGCAGGCTTAGGTGGTGCAACCAGCTCAGCCCCAGCGTCCAGCACCGTCCCTTTTCCCAAGCCGAAGACGAAACCATCCTCGCCGCGCACGCCCGCTACGGCAACCGGTGGGCCACCATTGCCCGGTTGCTCCCGGGCCGGACCGACAATGCGGTCAAGAACCACTGGAACTCGACCCTGAAGAGAAGGGTAAGAGAACCACAAGACCACCAAGAACTGGATCATCAGGGCGAGGGTAATATTGGCATTGCAGCGATTGAGGTGATGATGATGGGTAATACCACTACTACTACTACTACTACTACTAGTAGTGCTTCAGCTGCCTCCGGGCGTAATGGGTCCATGGATCTGGATGACCCGTTGACCGAGTTGACTCTGGCCACGCCGGGGATTGGTGGCTCTGTGGTGTCGTCGTCGGAACAACACCACCATCACCAGAGCAGCAGCGAGAGTTTTCCTCCGGCGGGGTTTTGGGATGTGATGAGGGGTGTGATTGCCAGGGAAGTTAGGGATTACGTGAGCTCGTCATTTTCAGAAACTTCTGGGCTTCATTGA

Protein Analysis

258

Amino Acids

28.4

Weight (kDa)

7.17

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 37 - 83 6.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 40 - 99 9e-18 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 90 - 133 1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 92 - 146 6.1e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016275)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 374
AccB7I CCANNNNNTGG 2 cut(s) 177, 439
AccII CGCG 1 cut(s) 308
AciI CCGC 6 cut(s) 148, 193, 306, 316, 374, 686
AclWI GGATC 2 cut(s) 450, 576
AcoI YGGCCR 1 cut(s) 600
AcuI CTGAAG 2 cut(s) 422, 522
AfeI AGCGCT 1 cut(s) 161
AfiI CCNNNNNNNGG 6 cut(s) 177, 345, 439, 609, 614, 686
AgeI ACCGGT 1 cut(s) 327
AhlI ACTAGT 1 cut(s) 527
AjnI CCWGG 1 cut(s) 719
AluBI AGCT 3 cut(s) 247, 542, 744
AluI AGCT 3 cut(s) 247, 542, 744
Alw21I GWGCWC 2 cut(s) 32, 746
AlwI GGATC 2 cut(s) 450, 576
Ama87I CYCGRG 2 cut(s) 211, 355
Aor51HI AGCGCT 1 cut(s) 161
AoxI GGCC 6 cut(s) 96, 112, 166, 333, 358, 600
ApaI GGGCCC 1 cut(s) 116
ApeKI GCWGC 5 cut(s) 76, 473, 542, 663, 666
AsiGI ACCGGT 1 cut(s) 327
AspLEI GCGC 3 cut(s) 125, 162, 310
AspS9I GGNCC 8 cut(s) 112, 113, 133, 167, 333, 358, 363, 561
AsuC2I CCSGG 6 cut(s) 137, 346, 356, 357, 550, 609
AsuHPI GGTGA 3 cut(s) 136, 496, 647
AvaI CYCGRG 2 cut(s) 211, 355
AvaII GGWCC 3 cut(s) 133, 363, 561
BaeGI GKGCMC 1 cut(s) 116
BalI TGGCCA 1 cut(s) 602
BanII GRGCYC 2 cut(s) 116, 746
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 2 cut(s) 32, 746
BbvI GCAGC 5 cut(s) 88, 485, 529, 675, 678
BccI CCATC 3 cut(s) 305, 487, 660
BceAI ACGGC 2 cut(s) 181, 337
BciT130I CCWGG 1 cut(s) 721
BcnI CCSGG 6 cut(s) 137, 346, 356, 357, 550, 609
BcuI ACTAGT 1 cut(s) 527
BfaI CTAG 1 cut(s) 528
BfmI CTRYAG 1 cut(s) 223
BfoI RGCGCY 2 cut(s) 126, 163
BisI GCNGC 7 cut(s) 77, 193, 306, 474, 543, 664, 667
BlpI GCTNAGC 1 cut(s) 248
BlsI GCNGC 7 cut(s) 78, 194, 307, 475, 544, 665, 668
Bme1390I CCNGG 7 cut(s) 137, 346, 356, 357, 550, 609, 721
Bme18I GGWCC 3 cut(s) 133, 363, 561
BmeT110I CYCGRG 2 cut(s) 211, 355
BmgT120I GGNCC 8 cut(s) 112, 113, 133, 167, 333, 358, 363, 561
BmiI GGNNCC 3 cut(s) 114, 169, 562
BmrFI CCNGG 7 cut(s) 137, 346, 356, 357, 550, 609, 721
BpiI GAAGAC 1 cut(s) 294
BplI GAGNNNNNCTC 2 cut(s) 664, 696
Bpu10I CCTNAGC 1 cut(s) 230
Bpu1102I GCTNAGC 1 cut(s) 248
BpuMI CCSGG 6 cut(s) 137, 346, 356, 357, 550, 609
BsaAI YACGTR 1 cut(s) 739
BsaJI CCNNGG 7 cut(s) 63, 116, 126, 355, 564, 608, 720
BsaWI WCCGGW 1 cut(s) 327
Bsc4I CCNNNNNNNGG 6 cut(s) 177, 345, 439, 609, 614, 686
Bse118I RCCGGY 1 cut(s) 327
Bse1I ACTGG 2 cut(s) 392, 444
Bse3DI GCAATG 2 cut(s) 339, 468
BseBI CCWGG 1 cut(s) 721
BseDI CCNNGG 7 cut(s) 63, 116, 126, 355, 564, 608, 720
BseGI GGATG 4 cut(s) 10, 297, 580, 703
BseLI CCNNNNNNNGG 6 cut(s) 177, 345, 439, 609, 614, 686
BseMI GCAATG 2 cut(s) 339, 468
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 2 cut(s) 392, 444
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 5 cut(s) 88, 485, 529, 675, 678
BseYI CCCAGC 1 cut(s) 254
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 6 cut(s) 98, 114, 168, 335, 360, 602
BshTI ACCGGT 1 cut(s) 327
BsiHKAI GWGCWC 2 cut(s) 32, 746
BsiHKCI CYCGRG 2 cut(s) 211, 355
BsiSI CCGG 8 cut(s) 136, 328, 346, 356, 361, 549, 608, 683
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 6 cut(s) 177, 345, 439, 609, 614, 686
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 6 cut(s) 98, 114, 168, 335, 360, 602
BsoBI CYCGRG 2 cut(s) 211, 355
Bsp120I GGGCCC 1 cut(s) 112
Bsp1286I GDGCHC 3 cut(s) 32, 116, 746
Bsp143I GATC 2 cut(s) 442, 568
Bsp1720I GCTNAGC 1 cut(s) 248
Bsp19I CCATGG 2 cut(s) 116, 564
BspACI CCGC 6 cut(s) 148, 193, 306, 316, 374, 686
BspANI GGCC 6 cut(s) 98, 114, 168, 335, 360, 602
BspCNI CTCAG 1 cut(s) 261
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 3 cut(s) 114, 169, 562
BspMAI CTGCAG 1 cut(s) 227
BspPI GGATC 2 cut(s) 450, 576
BspQI GCTCTTC 1 cut(s) 37
BsrDI GCAATG 2 cut(s) 339, 468
BsrFI RCCGGY 1 cut(s) 327
BsrI ACTGG 2 cut(s) 392, 444
BssAI RCCGGY 1 cut(s) 327
BssECI CCNNGG 7 cut(s) 63, 116, 126, 355, 564, 608, 720
BssMI GATC 2 cut(s) 442, 568
BssT1I CCWWGG 2 cut(s) 116, 564
Bst2UI CCWGG 1 cut(s) 721
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 3 cut(s) 37, 61, 398
BstAPI GCANNNNNTGC 2 cut(s) 14, 222
BstBAI YACGTR 1 cut(s) 739
BstC8I GCNNGC 3 cut(s) 227, 312, 316
BstDEI CTNAG 2 cut(s) 230, 248
BstDSI CCRYGG 2 cut(s) 116, 564
BstF5I GGATG 4 cut(s) 10, 297, 580, 703
BstFNI CGCG 1 cut(s) 308
BstH2I RGCGCY 2 cut(s) 126, 163
BstHHI GCGC 3 cut(s) 125, 162, 310
BstKTI GATC 2 cut(s) 445, 571
BstMBI GATC 2 cut(s) 442, 568
BstMWI GCNNNNNNNGC 6 cut(s) 14, 120, 222, 311, 341, 542
BstNI CCWGG 1 cut(s) 721
BstSCI CCNGG 7 cut(s) 135, 344, 354, 355, 548, 607, 719
BstSFI CTRYAG 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 116
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 5 cut(s) 88, 485, 529, 675, 678
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 568
BstXI CCANNNNNNTGG 1 cut(s) 571
BstYI RGATCY 1 cut(s) 568
BsuRI GGCC 6 cut(s) 98, 114, 168, 335, 360, 602
BtgI CCRYGG 2 cut(s) 116, 564
BtsCI GGATG 4 cut(s) 10, 297, 580, 703
BtsIMutI CAGTG 1 cut(s) 385
Cac8I GCNNGC 3 cut(s) 227, 312, 316
CfoI GCGC 3 cut(s) 125, 162, 310
Cfr10I RCCGGY 1 cut(s) 327
Cfr13I GGNCC 8 cut(s) 112, 113, 133, 167, 333, 358, 363, 561
Cfr9I CCCGGG 1 cut(s) 355
CpoI CGGWCCG 1 cut(s) 363
CseI GACGC 1 cut(s) 247
CspAI ACCGGT 1 cut(s) 327
CspI CGGWCCG 1 cut(s) 363
CviAII CATG 3 cut(s) 19, 117, 565
DdeI CTNAG 2 cut(s) 230, 248
DpnI GATC 2 cut(s) 444, 570
DpnII GATC 2 cut(s) 442, 568
DrdI GACNNNNNNGTC 1 cut(s) 374
DseDI GACNNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 1 cut(s) 600
Eam1104I CTCTTC 3 cut(s) 37, 61, 398
EarI CTCTTC 3 cut(s) 37, 61, 398
Ecl136II GAGCTC 1 cut(s) 744
Eco130I CCWWGG 2 cut(s) 116, 564
Eco24I GRGCYC 2 cut(s) 116, 746
Eco47I GGWCC 3 cut(s) 133, 363, 561
Eco47III AGCGCT 1 cut(s) 161
Eco53kI GAGCTC 1 cut(s) 744
Eco57I CTGAAG 2 cut(s) 422, 522
Eco88I CYCGRG 2 cut(s) 211, 355
EcoICRI GAGCTC 1 cut(s) 744
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 719
EcoT14I CCWWGG 2 cut(s) 116, 564
EcoT38I GRGCYC 2 cut(s) 116, 746
ErhI CCWWGG 2 cut(s) 116, 564
FaeI CATG 3 cut(s) 22, 120, 568
FaiI YATR 4 cut(s) 20, 26, 118, 566
FaqI GGGAC 1 cut(s) 255
FatI CATG 3 cut(s) 18, 116, 564
FauI CCCGC 3 cut(s) 155, 323, 679
Fnu4HI GCNGC 7 cut(s) 77, 193, 306, 474, 543, 664, 667
FokI GGATG 4 cut(s) 17, 284, 587, 710
FriOI GRGCYC 2 cut(s) 116, 746
Fsp4HI GCNGC 7 cut(s) 77, 193, 306, 474, 543, 664, 667
FspBI CTAG 1 cut(s) 528
GlaI GCGC 3 cut(s) 124, 161, 309
GluI GCNGC 7 cut(s) 77, 193, 306, 474, 543, 664, 667
GsaI CCCAGC 1 cut(s) 258
HaeII RGCGCY 2 cut(s) 126, 163
HaeIII GGCC 6 cut(s) 98, 114, 168, 335, 360, 602
HapII CCGG 8 cut(s) 136, 328, 346, 356, 361, 549, 608, 683
HgaI GACGC 1 cut(s) 247
HhaI GCGC 3 cut(s) 125, 162, 310
Hin1II CATG 3 cut(s) 22, 120, 568
Hin6I GCGC 3 cut(s) 123, 160, 308
HinP1I GCGC 3 cut(s) 123, 160, 308
HincII GTYRAC 2 cut(s) 585, 594
HindII GTYRAC 2 cut(s) 585, 594
HinfI GANTC 4 cut(s) 53, 68, 105, 595
HpaII CCGG 8 cut(s) 136, 328, 346, 356, 361, 549, 608, 683
HphI GGTGA 3 cut(s) 136, 496, 647
Hpy166II GTNNAC 2 cut(s) 585, 594
Hpy188I TCNGA 4 cut(s) 52, 67, 640, 757
Hpy188III TCNNGA 2 cut(s) 379, 572
Hpy8I GTNNAC 2 cut(s) 585, 594
Hpy99I CGWCG 3 cut(s) 158, 637, 640
HpyAV CCTTC 1 cut(s) 402
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 738
HpyCH4V TGCA 4 cut(s) 8, 225, 240, 473
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 120, 222, 311, 341, 542
HpyF3I CTNAG 2 cut(s) 230, 248
HpySE526I ACGT 1 cut(s) 738
Hsp92II CATG 3 cut(s) 22, 120, 568
HspAI GCGC 3 cut(s) 123, 160, 308
Kzo9I GATC 2 cut(s) 442, 568
LguI GCTCTTC 1 cut(s) 37
LmnI GCTCC 2 cut(s) 120, 357
Lsp1109I GCAGC 5 cut(s) 88, 485, 529, 675, 678
MaeI CTAG 1 cut(s) 528
MaeII ACGT 1 cut(s) 738
MalI GATC 2 cut(s) 444, 570
MboI GATC 2 cut(s) 442, 568
MboII GAAGA 6 cut(s) 24, 27, 48, 51, 299, 415
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 3 cut(s) 32, 116, 746
MlsI TGGCCA 1 cut(s) 602
MluCI AATT 1 cut(s) 175
MluNI TGGCCA 1 cut(s) 602
MlyI GAGTC 3 cut(s) 47, 77, 589
MmeI TCCRAC 2 cut(s) 75, 618
Mox20I TGGCCA 1 cut(s) 602
MscI TGGCCA 1 cut(s) 602
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 23
Msp20I TGGCCA 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 8 cut(s) 136, 328, 346, 356, 361, 549, 608, 683
MspR9I CCNGG 7 cut(s) 137, 346, 356, 357, 550, 609, 721
MvaI CCWGG 1 cut(s) 721
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 6 cut(s) 14, 120, 222, 311, 341, 542
NciI CCSGG 6 cut(s) 137, 346, 356, 357, 550, 609
NcoI CCATGG 2 cut(s) 116, 564
NdeII GATC 2 cut(s) 442, 568
NlaIII CATG 3 cut(s) 22, 120, 568
NlaIV GGNNCC 3 cut(s) 114, 169, 562
NmeAIII GCCGAG 2 cut(s) 124, 151
PciSI GCTCTTC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 105
PflMI CCANNNNNTGG 2 cut(s) 177, 439
PinAI ACCGGT 1 cut(s) 327
PkrI GCNGC 7 cut(s) 78, 194, 307, 475, 544, 665, 668
PleI GAGTC 3 cut(s) 47, 76, 589
PpsI GAGTC 3 cut(s) 47, 76, 589
Ppu21I YACGTR 1 cut(s) 739
Psp124BI GAGCTC 1 cut(s) 746
Psp6I CCWGG 1 cut(s) 719
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 1 cut(s) 719
PspN4I GGNNCC 3 cut(s) 114, 169, 562
PspOMI GGGCCC 1 cut(s) 112
PspPI GGNCC 8 cut(s) 112, 113, 133, 167, 333, 358, 363, 561
PstI CTGCAG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 568
PvuII CAGCTG 1 cut(s) 542
RseI CAYNNNNRTG 1 cut(s) 23
Rsr2I CGGWCCG 1 cut(s) 363
RsrII CGGWCCG 1 cut(s) 363
SacI GAGCTC 1 cut(s) 746
SapI GCTCTTC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 7 cut(s) 77, 193, 306, 474, 543, 664, 667
Sau3AI GATC 2 cut(s) 442, 568
Sau96I GGNCC 8 cut(s) 112, 113, 133, 167, 333, 358, 363, 561
SbfI CCTGCAGG 1 cut(s) 227
SchI GAGTC 3 cut(s) 47, 77, 589
ScrFI CCNGG 7 cut(s) 137, 346, 356, 357, 550, 609, 721
SdaI CCTGCAGG 1 cut(s) 227
SduI GDGCHC 3 cut(s) 32, 116, 746
SetI ASST 7 cut(s) 50, 236, 249, 486, 544, 741, 746
SfcI CTRYAG 1 cut(s) 223
SinI GGWCC 3 cut(s) 133, 363, 561
SmaI CCCGGG 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 23
SpeI ACTAGT 1 cut(s) 527
Sse8387I CCTGCAGG 1 cut(s) 227
Sse9I AATT 1 cut(s) 175
SsiI CCGC 6 cut(s) 148, 193, 306, 316, 374, 686
SspI AATATT 2 cut(s) 13, 463
SspMI CTAG 1 cut(s) 528
SstI GAGCTC 1 cut(s) 746
StyD4I CCNGG 7 cut(s) 135, 344, 354, 355, 548, 607, 719
StyI CCWWGG 2 cut(s) 116, 564
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 1 cut(s) 741
TaqI TCGA 2 cut(s) 156, 395
TaqII GACCGA 2 cut(s) 380, 602
TasI AATT 1 cut(s) 175
TauI GCSGC 2 cut(s) 195, 308
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 1 cut(s) 392
TseI GCWGC 5 cut(s) 76, 473, 542, 663, 666
TspDTI ATGAA 2 cut(s) 35, 761
TspMI CCCGGG 1 cut(s) 355
TspRI CASTG 1 cut(s) 392
Van91I CCANNNNNTGG 2 cut(s) 177, 439
VpaK11BI GGWCC 3 cut(s) 133, 363, 561
XmaI CCCGGG 1 cut(s) 355
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.