Rh6BG434300
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
65438635 .. 65440170
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG434300.1

Sequence Viewer

Length: 780 bp
ATGGATGCAAATATTGCCATGAATATGTGCTCTTCTTCTACTTCTACCTCCGACTCTTCTTCCTCGGAGTCCTCGCAGCCCAGAAATCCCAACAAGGCCGAGAGAATCAAGGGCCCATGGAGCGCCGAGGAGGACCGGGCTCTAACCCGCCTCGTCGAGCGCTACGGCCCCAGAAATTGGTCTTTGATTAGCCGCTACATTAAGGGTCGCTCGGGCAAGTCCTGCAGGCTTAGGTGGTGCAACCAGCTCAGCCCCAGCGTCCAGCACCGTCCCTTTTCCCAAGCCGAAGACGAAACCATCCTTGCCGCGCACGCCCGCTACGGCAACCGGTGGGCCACCATTGCCCGGTTGCTCCCGGGCCGGACCGACAATGCGGTCAAGAACCACTGGAACTCGACCCTGAAGAGAAGGGTAAGAGAACCACAAGACCACCAAGAACTGGATCATCAGGGCGAGGGTAATATTGGCATTGCAGCGATTGAGGTGATGATGATGGGTAATACTACTACTACTACTACTACTACTACTACTAGTAGTGCTTCAGCTGCCTCCGGGCGTAATGGGTCCATGGATCTGGATGACCCGTTGACCGAGTTGACTCTGGCCACGCCGGGGATTGGTGGCTCTGTGGTGTCGTCGTCGGAACAACACCACCATCACCAGAGCAGCAGCGAGAGTTTTCCTCCGGCGGGGTTTTGGGATGTGATGAGGGGTGTGATTGCCAGGGAAGTTAGGGATTACGTGAGCTCGTCATTTTCAGAAACTTCTGGGCTTCATTGA

Protein Analysis

259

Amino Acids

28.47

Weight (kDa)

7.17

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 37 - 83 2.3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 40 - 99 6.5e-18 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 90 - 133 1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 92 - 146 6.2e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016275)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 374
AccB7I CCANNNNNTGG 2 cut(s) 177, 439
AccII CGCG 1 cut(s) 308
AciI CCGC 6 cut(s) 148, 193, 306, 316, 374, 689
AclWI GGATC 2 cut(s) 450, 579
AcoI YGGCCR 1 cut(s) 603
AcuI CTGAAG 2 cut(s) 422, 525
AfeI AGCGCT 1 cut(s) 161
AfiI CCNNNNNNNGG 6 cut(s) 177, 345, 439, 612, 617, 689
AgeI ACCGGT 1 cut(s) 327
AhlI ACTAGT 1 cut(s) 530
AjnI CCWGG 1 cut(s) 722
AluBI AGCT 3 cut(s) 247, 545, 747
AluI AGCT 3 cut(s) 247, 545, 747
Alw21I GWGCWC 2 cut(s) 32, 749
AlwI GGATC 2 cut(s) 450, 579
Ama87I CYCGRG 2 cut(s) 211, 355
Aor51HI AGCGCT 1 cut(s) 161
AoxI GGCC 6 cut(s) 96, 112, 166, 333, 358, 603
ApaI GGGCCC 1 cut(s) 116
ApeKI GCWGC 5 cut(s) 76, 473, 545, 666, 669
AsiGI ACCGGT 1 cut(s) 327
AspLEI GCGC 3 cut(s) 125, 162, 310
AspS9I GGNCC 8 cut(s) 112, 113, 133, 167, 333, 358, 363, 564
AsuC2I CCSGG 6 cut(s) 137, 346, 356, 357, 553, 612
AsuHPI GGTGA 2 cut(s) 496, 650
AvaI CYCGRG 2 cut(s) 211, 355
AvaII GGWCC 3 cut(s) 133, 363, 564
BaeGI GKGCMC 1 cut(s) 116
BalI TGGCCA 1 cut(s) 605
BanII GRGCYC 3 cut(s) 116, 142, 749
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 2 cut(s) 32, 749
BbvI GCAGC 5 cut(s) 88, 485, 532, 678, 681
BccI CCATC 3 cut(s) 305, 487, 663
BceAI ACGGC 2 cut(s) 181, 337
BciT130I CCWGG 1 cut(s) 724
BcnI CCSGG 6 cut(s) 137, 346, 356, 357, 553, 612
BcuI ACTAGT 1 cut(s) 530
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 223
BfoI RGCGCY 2 cut(s) 126, 163
BisI GCNGC 7 cut(s) 77, 193, 306, 474, 546, 667, 670
BlpI GCTNAGC 1 cut(s) 248
BlsI GCNGC 7 cut(s) 78, 194, 307, 475, 547, 668, 671
Bme1390I CCNGG 7 cut(s) 137, 346, 356, 357, 553, 612, 724
Bme18I GGWCC 3 cut(s) 133, 363, 564
BmeT110I CYCGRG 2 cut(s) 211, 355
BmgT120I GGNCC 8 cut(s) 112, 113, 133, 167, 333, 358, 363, 564
BmiI GGNNCC 3 cut(s) 114, 169, 565
BmrFI CCNGG 7 cut(s) 137, 346, 356, 357, 553, 612, 724
BpiI GAAGAC 1 cut(s) 294
BplI GAGNNNNNCTC 2 cut(s) 667, 699
Bpu10I CCTNAGC 1 cut(s) 230
Bpu1102I GCTNAGC 1 cut(s) 248
BpuMI CCSGG 6 cut(s) 137, 346, 356, 357, 553, 612
BsaAI YACGTR 1 cut(s) 742
BsaJI CCNNGG 7 cut(s) 63, 116, 126, 355, 567, 611, 723
BsaWI WCCGGW 1 cut(s) 327
Bsc4I CCNNNNNNNGG 6 cut(s) 177, 345, 439, 612, 617, 689
Bse118I RCCGGY 1 cut(s) 327
Bse1I ACTGG 2 cut(s) 392, 444
Bse3DI GCAATG 2 cut(s) 339, 468
BseBI CCWGG 1 cut(s) 724
BseDI CCNNGG 7 cut(s) 63, 116, 126, 355, 567, 611, 723
BseGI GGATG 4 cut(s) 10, 297, 583, 706
BseLI CCNNNNNNNGG 6 cut(s) 177, 345, 439, 612, 617, 689
BseMI GCAATG 2 cut(s) 339, 468
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 2 cut(s) 392, 444
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 5 cut(s) 88, 485, 532, 678, 681
BseYI CCCAGC 1 cut(s) 254
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 6 cut(s) 98, 114, 168, 335, 360, 605
BshTI ACCGGT 1 cut(s) 327
BsiHKAI GWGCWC 2 cut(s) 32, 749
BsiHKCI CYCGRG 2 cut(s) 211, 355
BsiSI CCGG 8 cut(s) 136, 328, 346, 356, 361, 552, 611, 686
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 6 cut(s) 177, 345, 439, 612, 617, 689
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 6 cut(s) 98, 114, 168, 335, 360, 605
BsoBI CYCGRG 2 cut(s) 211, 355
Bsp120I GGGCCC 1 cut(s) 112
Bsp1286I GDGCHC 4 cut(s) 32, 116, 142, 749
Bsp143I GATC 2 cut(s) 442, 571
Bsp1720I GCTNAGC 1 cut(s) 248
Bsp19I CCATGG 2 cut(s) 116, 567
BspACI CCGC 6 cut(s) 148, 193, 306, 316, 374, 689
BspANI GGCC 6 cut(s) 98, 114, 168, 335, 360, 605
BspCNI CTCAG 1 cut(s) 261
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 3 cut(s) 114, 169, 565
BspMAI CTGCAG 1 cut(s) 227
BspPI GGATC 2 cut(s) 450, 579
BspQI GCTCTTC 1 cut(s) 37
BsrDI GCAATG 2 cut(s) 339, 468
BsrFI RCCGGY 1 cut(s) 327
BsrI ACTGG 2 cut(s) 392, 444
BssAI RCCGGY 1 cut(s) 327
BssECI CCNNGG 7 cut(s) 63, 116, 126, 355, 567, 611, 723
BssMI GATC 2 cut(s) 442, 571
BssT1I CCWWGG 2 cut(s) 116, 567
Bst2UI CCWGG 1 cut(s) 724
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 3 cut(s) 37, 61, 398
BstAPI GCANNNNNTGC 2 cut(s) 14, 222
BstBAI YACGTR 1 cut(s) 742
BstC8I GCNNGC 3 cut(s) 227, 312, 316
BstDEI CTNAG 2 cut(s) 230, 248
BstDSI CCRYGG 2 cut(s) 116, 567
BstF5I GGATG 4 cut(s) 10, 297, 583, 706
BstFNI CGCG 1 cut(s) 308
BstH2I RGCGCY 2 cut(s) 126, 163
BstHHI GCGC 3 cut(s) 125, 162, 310
BstKTI GATC 2 cut(s) 445, 574
BstMBI GATC 2 cut(s) 442, 571
BstMWI GCNNNNNNNGC 6 cut(s) 14, 120, 222, 311, 341, 545
BstNI CCWGG 1 cut(s) 724
BstSCI CCNGG 7 cut(s) 135, 344, 354, 355, 551, 610, 722
BstSFI CTRYAG 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 116
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 5 cut(s) 88, 485, 532, 678, 681
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 571
BstXI CCANNNNNNTGG 1 cut(s) 574
BstYI RGATCY 1 cut(s) 571
BsuRI GGCC 6 cut(s) 98, 114, 168, 335, 360, 605
BtgI CCRYGG 2 cut(s) 116, 567
BtsCI GGATG 4 cut(s) 10, 297, 583, 706
BtsIMutI CAGTG 1 cut(s) 385
Cac8I GCNNGC 3 cut(s) 227, 312, 316
CfoI GCGC 3 cut(s) 125, 162, 310
Cfr10I RCCGGY 1 cut(s) 327
Cfr13I GGNCC 8 cut(s) 112, 113, 133, 167, 333, 358, 363, 564
Cfr9I CCCGGG 1 cut(s) 355
CpoI CGGWCCG 1 cut(s) 363
CseI GACGC 1 cut(s) 247
CspAI ACCGGT 1 cut(s) 327
CspI CGGWCCG 1 cut(s) 363
CviAII CATG 3 cut(s) 19, 117, 568
DdeI CTNAG 2 cut(s) 230, 248
DpnI GATC 2 cut(s) 444, 573
DpnII GATC 2 cut(s) 442, 571
DrdI GACNNNNNNGTC 1 cut(s) 374
DseDI GACNNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 1 cut(s) 603
Eam1104I CTCTTC 3 cut(s) 37, 61, 398
EarI CTCTTC 3 cut(s) 37, 61, 398
Ecl136II GAGCTC 1 cut(s) 747
Eco130I CCWWGG 2 cut(s) 116, 567
Eco24I GRGCYC 3 cut(s) 116, 142, 749
Eco47I GGWCC 3 cut(s) 133, 363, 564
Eco47III AGCGCT 1 cut(s) 161
Eco53kI GAGCTC 1 cut(s) 747
Eco57I CTGAAG 2 cut(s) 422, 525
Eco88I CYCGRG 2 cut(s) 211, 355
EcoICRI GAGCTC 1 cut(s) 747
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 722
EcoT14I CCWWGG 2 cut(s) 116, 567
EcoT38I GRGCYC 3 cut(s) 116, 142, 749
ErhI CCWWGG 2 cut(s) 116, 567
FaeI CATG 3 cut(s) 22, 120, 571
FaiI YATR 4 cut(s) 20, 26, 118, 569
FaqI GGGAC 1 cut(s) 255
FatI CATG 3 cut(s) 18, 116, 567
FauI CCCGC 3 cut(s) 155, 323, 682
Fnu4HI GCNGC 7 cut(s) 77, 193, 306, 474, 546, 667, 670
FokI GGATG 4 cut(s) 17, 284, 590, 713
FriOI GRGCYC 3 cut(s) 116, 142, 749
Fsp4HI GCNGC 7 cut(s) 77, 193, 306, 474, 546, 667, 670
FspBI CTAG 1 cut(s) 531
GlaI GCGC 3 cut(s) 124, 161, 309
GluI GCNGC 7 cut(s) 77, 193, 306, 474, 546, 667, 670
GsaI CCCAGC 1 cut(s) 258
HaeII RGCGCY 2 cut(s) 126, 163
HaeIII GGCC 6 cut(s) 98, 114, 168, 335, 360, 605
HapII CCGG 8 cut(s) 136, 328, 346, 356, 361, 552, 611, 686
HgaI GACGC 1 cut(s) 247
HhaI GCGC 3 cut(s) 125, 162, 310
Hin1II CATG 3 cut(s) 22, 120, 571
Hin6I GCGC 3 cut(s) 123, 160, 308
HinP1I GCGC 3 cut(s) 123, 160, 308
HincII GTYRAC 2 cut(s) 588, 597
HindII GTYRAC 2 cut(s) 588, 597
HinfI GANTC 4 cut(s) 53, 68, 105, 598
HpaII CCGG 8 cut(s) 136, 328, 346, 356, 361, 552, 611, 686
HphI GGTGA 2 cut(s) 496, 650
Hpy166II GTNNAC 2 cut(s) 588, 597
Hpy188I TCNGA 4 cut(s) 52, 67, 643, 760
Hpy188III TCNNGA 2 cut(s) 379, 575
Hpy8I GTNNAC 2 cut(s) 588, 597
Hpy99I CGWCG 3 cut(s) 158, 640, 643
HpyAV CCTTC 1 cut(s) 402
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 741
HpyCH4V TGCA 4 cut(s) 8, 225, 240, 473
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 120, 222, 311, 341, 545
HpyF3I CTNAG 2 cut(s) 230, 248
HpySE526I ACGT 1 cut(s) 741
Hsp92II CATG 3 cut(s) 22, 120, 571
HspAI GCGC 3 cut(s) 123, 160, 308
Kzo9I GATC 2 cut(s) 442, 571
LguI GCTCTTC 1 cut(s) 37
LmnI GCTCC 2 cut(s) 120, 357
Lsp1109I GCAGC 5 cut(s) 88, 485, 532, 678, 681
MaeI CTAG 1 cut(s) 531
MaeII ACGT 1 cut(s) 741
MalI GATC 2 cut(s) 444, 573
MboI GATC 2 cut(s) 442, 571
MboII GAAGA 6 cut(s) 24, 27, 48, 51, 299, 415
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 4 cut(s) 32, 116, 142, 749
MlsI TGGCCA 1 cut(s) 605
MluCI AATT 1 cut(s) 175
MluNI TGGCCA 1 cut(s) 605
MlyI GAGTC 3 cut(s) 47, 77, 592
MmeI TCCRAC 2 cut(s) 75, 621
Mox20I TGGCCA 1 cut(s) 605
MscI TGGCCA 1 cut(s) 605
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 23
Msp20I TGGCCA 1 cut(s) 605
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 8 cut(s) 136, 328, 346, 356, 361, 552, 611, 686
MspR9I CCNGG 7 cut(s) 137, 346, 356, 357, 553, 612, 724
MvaI CCWGG 1 cut(s) 724
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 6 cut(s) 14, 120, 222, 311, 341, 545
NciI CCSGG 6 cut(s) 137, 346, 356, 357, 553, 612
NcoI CCATGG 2 cut(s) 116, 567
NdeII GATC 2 cut(s) 442, 571
NlaIII CATG 3 cut(s) 22, 120, 571
NlaIV GGNNCC 3 cut(s) 114, 169, 565
NmeAIII GCCGAG 2 cut(s) 124, 151
PciSI GCTCTTC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 105
PflMI CCANNNNNTGG 2 cut(s) 177, 439
PinAI ACCGGT 1 cut(s) 327
PkrI GCNGC 7 cut(s) 78, 194, 307, 475, 547, 668, 671
PleI GAGTC 3 cut(s) 47, 76, 592
PpsI GAGTC 3 cut(s) 47, 76, 592
Ppu21I YACGTR 1 cut(s) 742
Psp124BI GAGCTC 1 cut(s) 749
Psp6I CCWGG 1 cut(s) 722
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 1 cut(s) 722
PspN4I GGNNCC 3 cut(s) 114, 169, 565
PspOMI GGGCCC 1 cut(s) 112
PspPI GGNCC 8 cut(s) 112, 113, 133, 167, 333, 358, 363, 564
PstI CTGCAG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 571
PvuII CAGCTG 1 cut(s) 545
RseI CAYNNNNRTG 1 cut(s) 23
Rsr2I CGGWCCG 1 cut(s) 363
RsrII CGGWCCG 1 cut(s) 363
SacI GAGCTC 1 cut(s) 749
SapI GCTCTTC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 7 cut(s) 77, 193, 306, 474, 546, 667, 670
Sau3AI GATC 2 cut(s) 442, 571
Sau96I GGNCC 8 cut(s) 112, 113, 133, 167, 333, 358, 363, 564
SbfI CCTGCAGG 1 cut(s) 227
SchI GAGTC 3 cut(s) 47, 77, 592
ScrFI CCNGG 7 cut(s) 137, 346, 356, 357, 553, 612, 724
SdaI CCTGCAGG 1 cut(s) 227
SduI GDGCHC 4 cut(s) 32, 116, 142, 749
SetI ASST 7 cut(s) 50, 236, 249, 486, 547, 744, 749
SfcI CTRYAG 1 cut(s) 223
SinI GGWCC 3 cut(s) 133, 363, 564
SmaI CCCGGG 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 23
SpeI ACTAGT 1 cut(s) 530
Sse8387I CCTGCAGG 1 cut(s) 227
Sse9I AATT 1 cut(s) 175
SsiI CCGC 6 cut(s) 148, 193, 306, 316, 374, 689
SspI AATATT 2 cut(s) 13, 463
SspMI CTAG 1 cut(s) 531
SstI GAGCTC 1 cut(s) 749
StyD4I CCNGG 7 cut(s) 135, 344, 354, 355, 551, 610, 722
StyI CCWWGG 2 cut(s) 116, 567
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 1 cut(s) 744
TaqI TCGA 2 cut(s) 156, 395
TaqII GACCGA 2 cut(s) 380, 605
TasI AATT 1 cut(s) 175
TauI GCSGC 2 cut(s) 195, 308
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 1 cut(s) 392
TseI GCWGC 5 cut(s) 76, 473, 545, 666, 669
TspDTI ATGAA 2 cut(s) 35, 764
TspMI CCCGGG 1 cut(s) 355
TspRI CASTG 1 cut(s) 392
Van91I CCANNNNNTGG 2 cut(s) 177, 439
VpaK11BI GGWCC 3 cut(s) 133, 363, 564
XmaI CCCGGG 1 cut(s) 355
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.