Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0016275

Physical Location & Seq

Genomic Coordinates Forward (+)

7219330 .. 7220061

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g08930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAAGCGATGAATATGTGCTCGTCATCTACTTCGTCTTCCGGCGCTTCCTCGTCTGAGTCTTCCCTCCCGAGAAATCCCAACAAGCCCGAACGAATCAAGGGCCCGTGGAGCGCTGAGGAGGACCGTGTCCTGACCCAGCTCGTCGACCGCTACGGGCCTAGAAACTGGTCATTAATAAGCCGGTACATAAAGGGCCGGTCCGGGAAGTCGTGCAGGCTCAGGTGGTGCAACCAGCTGAGCCCCAGCGTCCAGCACCGACCCTTCTCTCAGGCCGAGGACGAGACCATCTTGGCCGCACACGCTCGGTTCGGAAACAGGTGGGCCACCATTGCCCGCCTGCTTCCGGGTCGAACTGACAACGCGGTGAAAAATCACTGGAACTCGACGTTGAAGCGGAGGGTCATGGGAGATCAACTAACGGAGGGTGGTAGTTTTGGGGGCGGCGGCGGCGGCGGCAATGTGGGTAGTAATGAGGGGATGAGCACGAGTTCGGTTTCCGGATCTTTGGCCAATGGGTCGATGGAGTTTGACCCGTTGACGGAGTTGACTTTGGCACCGCCGGGGATTGGTAGCGGAAGCGGCGGGGCGAAGGTGGGGGAGCAGCAGAGGAATAATGAGAGTGGGCCGTCGGGGTTTTGGGACTCGATGAGGGATGTGATCGCTAGGGAGGTTAGAGATTACGTGGCGACAACATTTTCAGAGCCTTCGGAGCTTCATAGATTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

244

Amino Acids

26.22

Weight (kDa)

8.88

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	34 - 80	1.1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	37 - 96	9.5e-18	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	87 - 130	3.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	89 - 135	1.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35010
malus_domestica	MD08G1107400.v1.1 MD15G1088000.v1.1
prunus_persica	Prupe.1G441700_v2.0.a1
pyrus_communis	pycom08g08930 pycom15g08260
rosa_chinensis	RchiOBHm_Chr6g0307001
rosa_laevigata	RLG00000010748
rosa_roxburghii	Rroxscaffold_7G00161290
rosa_rugosa	Rorug06G0354900
rosa_samantha	Rh6AG466700 Rh6BG434300 Rh6CG481700 Rh6DG468000
rosa_wichuraiana	Rw6G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	365
AccIII	TCCGGA	1 cut(s)	500
AclWI	GGATC	1 cut(s)	511
AcoI	YGGCCR	2 cut(s)	294, 510
AfaI	GTAC	1 cut(s)	188
AfeI	AGCGCT	1 cut(s)	115
AfiI	CCNNNNNNNGG	3 cut(s)	346, 541, 569
AgsI	TTSAA	1 cut(s)	394
AluBI	AGCT	3 cut(s)	142, 238, 715
AluI	AGCT	3 cut(s)	142, 238, 715
Alw21I	GWGCWC	2 cut(s)	23, 488
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	511
Ama87I	CYCGRG	1 cut(s)	70
Aor13HI	TCCGGA	1 cut(s)	500
Aor51HI	AGCGCT	1 cut(s)	115
AoxI	GGCC	8 cut(s)	103, 158, 196, 273, 294, 324, 510, 626
ApaI	GGGCCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	604
AseI	ATTAAT	1 cut(s)	176
AspLEI	GCGC	2 cut(s)	47, 116
AspS9I	GGNCC	8 cut(s)	103, 104, 124, 158, 196, 201, 324, 626
AsuC2I	CCSGG	3 cut(s)	205, 348, 564
AsuHPI	GGTGA	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	2 cut(s)	124, 201
BaeGI	GKGCMC	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	556
BanII	GRGCYC	2 cut(s)	107, 245
BauI	CACGAG	1 cut(s)	487
BbsI	GAAGAC	2 cut(s)	30, 54
Bbv12I	GWGCWC	2 cut(s)	23, 488
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	2 cut(s)	296, 517
BceAI	ACGGC	1 cut(s)	613
BcnI	CCSGG	3 cut(s)	205, 348, 564
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	2 cut(s)	162, 666
BfoI	RGCGCY	2 cut(s)	48, 117
BisI	GCNGC	8 cut(s)	297, 445, 448, 451, 454, 457, 583, 605
BlpI	GCTNAGC	1 cut(s)	239
BlsI	GCNGC	8 cut(s)	298, 446, 449, 452, 455, 458, 584, 606
Bme1390I	CCNGG	3 cut(s)	205, 348, 564
Bme18I	GGWCC	2 cut(s)	124, 201
BmeT110I	CYCGRG	1 cut(s)	70
BmgT120I	GGNCC	8 cut(s)	103, 104, 124, 158, 196, 201, 324, 626
BmiI	GGNNCC	2 cut(s)	105, 558
BmrFI	CCNGG	3 cut(s)	205, 348, 564
BpiI	GAAGAC	2 cut(s)	30, 54
Bpu10I	CCTNAGC	2 cut(s)	117, 221
Bpu1102I	GCTNAGC	1 cut(s)	239
BpuMI	CCSGG	3 cut(s)	205, 348, 564
BsaAI	YACGTR	1 cut(s)	685
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	3 cut(s)	107, 276, 563
BsaWI	WCCGGW	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 541, 569
Bse118I	RCCGGY	2 cut(s)	183, 198
Bse1I	ACTGG	2 cut(s)	173, 383
Bse3DI	GCAATG	2 cut(s)	330, 466
BseAI	TCCGGA	1 cut(s)	500
BseDI	CCNNGG	3 cut(s)	107, 276, 563
BseGI	GGATG	2 cut(s)	486, 661
BseLI	CCNNNNNNNGG	3 cut(s)	346, 541, 569
BseMI	GCAATG	2 cut(s)	330, 466
BseMII	CTCAG	5 cut(s)	48, 108, 230, 235, 284
BseNI	ACTGG	2 cut(s)	173, 383
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	616
BseYI	CCCAGC	2 cut(s)	138, 245
BsgI	GTGCAG	1 cut(s)	235
Bsh1236I	CGCG	1 cut(s)	365
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	8 cut(s)	105, 160, 198, 275, 296, 326, 512, 628
BshNI	GGYRCC	1 cut(s)	556
BsiEI	CGRYCG	1 cut(s)	151
BsiHKAI	GWGCWC	2 cut(s)	23, 488
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	7 cut(s)	42, 184, 199, 204, 347, 501, 563
BslFI	GGGAC	1 cut(s)	656
BslI	CCNNNNNNNGG	3 cut(s)	346, 541, 569
BsmAI	GTCTC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	656
BsnI	GGCC	8 cut(s)	105, 160, 198, 275, 296, 326, 512, 628
Bso31I	GGTCTC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	70
Bsp120I	GGGCCC	1 cut(s)	103
Bsp1286I	GDGCHC	4 cut(s)	23, 107, 245, 488
Bsp13I	TCCGGA	1 cut(s)	500
Bsp143I	GATC	3 cut(s)	412, 503, 660
Bsp1720I	GCTNAGC	1 cut(s)	239
BspANI	GGCC	8 cut(s)	105, 160, 198, 275, 296, 326, 512, 628
BspCNI	CTCAG	5 cut(s)	49, 109, 231, 234, 283
BspEI	TCCGGA	1 cut(s)	500
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	2 cut(s)	105, 558
BspPI	GGATC	1 cut(s)	511
BspT107I	GGYRCC	1 cut(s)	556
BspTNI	GGTCTC	1 cut(s)	278
BsrDI	GCAATG	2 cut(s)	330, 466
BsrFI	RCCGGY	2 cut(s)	183, 198
BsrI	ACTGG	2 cut(s)	173, 383
BssAI	RCCGGY	2 cut(s)	183, 198
BssECI	CCNNGG	3 cut(s)	107, 276, 563
BssMI	GATC	3 cut(s)	412, 503, 660
BssSI	CACGAG	1 cut(s)	487
Bst2BI	CACGAG	1 cut(s)	487
Bst4CI	ACNGT	1 cut(s)	128
BstBAI	YACGTR	1 cut(s)	685
BstC8I	GCNNGC	3 cut(s)	218, 337, 341
BstDEI	CTNAG	5 cut(s)	57, 117, 221, 239, 270
BstDSI	CCRYGG	1 cut(s)	107
BstF5I	GGATG	2 cut(s)	486, 661
BstFNI	CGCG	1 cut(s)	365
BstH2I	RGCGCY	2 cut(s)	48, 117
BstHHI	GCGC	2 cut(s)	47, 116
BstKTI	GATC	3 cut(s)	415, 506, 663
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	3 cut(s)	412, 503, 660
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	8 cut(s)	111, 302, 332, 450, 453, 456, 582, 712
BstSCI	CCNGG	3 cut(s)	203, 346, 562
BstSLI	GKGCMC	1 cut(s)	107
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	616
BstV2I	GAAGAC	2 cut(s)	30, 54
BstX2I	RGATCY	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	503
BsuRI	GGCC	8 cut(s)	105, 160, 198, 275, 296, 326, 512, 628
BtgI	CCRYGG	1 cut(s)	107
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	486, 661
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	3 cut(s)	218, 337, 341
CfoI	GCGC	2 cut(s)	47, 116
Cfr10I	RCCGGY	2 cut(s)	183, 198
Cfr13I	GGNCC	8 cut(s)	103, 104, 124, 158, 196, 201, 324, 626
CpoI	CGGWCCG	1 cut(s)	201
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	187
CspI	CGGWCCG	1 cut(s)	201
CviAII	CATG	1 cut(s)	406
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	5 cut(s)	57, 117, 221, 239, 270
DpnI	GATC	3 cut(s)	414, 505, 662
DpnII	GATC	3 cut(s)	412, 503, 660
EaeI	YGGCCR	2 cut(s)	294, 510
Eco24I	GRGCYC	2 cut(s)	107, 245
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	2 cut(s)	124, 201
Eco47III	AGCGCT	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	103
EcoT38I	GRGCYC	2 cut(s)	107, 245
FaeI	CATG	1 cut(s)	409
FaiI	YATR	4 cut(s)	17, 191, 407, 720
FaqI	GGGAC	1 cut(s)	656
FatI	CATG	1 cut(s)	405
FauI	CCCGC	2 cut(s)	344, 578
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	8 cut(s)	297, 445, 448, 451, 454, 457, 583, 605
FokI	GGATG	2 cut(s)	493, 668
FriOI	GRGCYC	2 cut(s)	107, 245
Fsp4HI	GCNGC	8 cut(s)	297, 445, 448, 451, 454, 457, 583, 605
FspBI	CTAG	2 cut(s)	162, 666
GlaI	GCGC	2 cut(s)	46, 115
GluI	GCNGC	8 cut(s)	297, 445, 448, 451, 454, 457, 583, 605
GsaI	CCCAGC	2 cut(s)	142, 249
HaeII	RGCGCY	2 cut(s)	48, 117
HaeIII	GGCC	8 cut(s)	105, 160, 198, 275, 296, 326, 512, 628
HapII	CCGG	7 cut(s)	42, 184, 199, 204, 347, 501, 563
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	2 cut(s)	47, 116
Hin1II	CATG	1 cut(s)	409
Hin6I	GCGC	2 cut(s)	45, 114
HinP1I	GCGC	2 cut(s)	45, 114
HincII	GTYRAC	3 cut(s)	148, 540, 549
HindII	GTYRAC	3 cut(s)	148, 540, 549
HinfI	GANTC	3 cut(s)	59, 96, 644
HpaII	CCGG	7 cut(s)	42, 184, 199, 204, 347, 501, 563
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	3 cut(s)	148, 540, 549
Hpy188I	TCNGA	4 cut(s)	58, 314, 703, 712
Hpy188III	TCNNGA	3 cut(s)	70, 133, 501
Hpy8I	GTNNAC	3 cut(s)	148, 540, 549
Hpy99I	CGWCG	3 cut(s)	149, 391, 634
HpyAV	CCTTC	3 cut(s)	274, 586, 717
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	2 cut(s)	389, 684
HpyCH4V	TGCA	2 cut(s)	216, 231
HpyF10VI	GCNNNNNNNGC	8 cut(s)	111, 302, 332, 450, 453, 456, 582, 712
HpyF3I	CTNAG	5 cut(s)	57, 117, 221, 239, 270
HpySE526I	ACGT	2 cut(s)	389, 684
Hsp92II	CATG	1 cut(s)	409
HspAI	GCGC	2 cut(s)	45, 114
Kpn2I	TCCGGA	1 cut(s)	500
Kzo9I	GATC	3 cut(s)	412, 503, 660
LmnI	GCTCC	3 cut(s)	111, 601, 712
Lsp1109I	GCAGC	1 cut(s)	616
MaeI	CTAG	2 cut(s)	162, 666
MaeII	ACGT	2 cut(s)	389, 684
MalI	GATC	3 cut(s)	414, 505, 662
MboI	GATC	3 cut(s)	412, 503, 660
MboII	GAAGA	2 cut(s)	30, 54
MflI	RGATCY	1 cut(s)	503
MhlI	GDGCHC	4 cut(s)	23, 107, 245, 488
MlsI	TGGCCA	1 cut(s)	512
MluCI	AATT	1 cut(s)	727
MluNI	TGGCCA	1 cut(s)	512
MlyI	GAGTC	2 cut(s)	68, 638
Mox20I	TGGCCA	1 cut(s)	512
MroI	TCCGGA	1 cut(s)	500
MscI	TGGCCA	1 cut(s)	512
MseI	TTAA	3 cut(s)	176, 725, 730
Msp20I	TGGCCA	1 cut(s)	512
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	7 cut(s)	42, 184, 199, 204, 347, 501, 563
MspR9I	CCNGG	3 cut(s)	205, 348, 564
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	8 cut(s)	111, 302, 332, 450, 453, 456, 582, 712
NciI	CCSGG	3 cut(s)	205, 348, 564
NdeII	GATC	3 cut(s)	412, 503, 660
NlaIII	CATG	1 cut(s)	409
NlaIV	GGNNCC	2 cut(s)	105, 558
NmeAIII	GCCGAG	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	96
PflFI	GACNNNGTC	1 cut(s)	128
PfoI	TCCNGGA	1 cut(s)	203
PkrI	GCNGC	8 cut(s)	298, 446, 449, 452, 455, 458, 584, 606
PleI	GAGTC	2 cut(s)	67, 638
PpsI	GAGTC	2 cut(s)	67, 638
Ppu21I	YACGTR	1 cut(s)	685
PshBI	ATTAAT	1 cut(s)	176
PspFI	CCCAGC	2 cut(s)	138, 245
PspN4I	GGNNCC	2 cut(s)	105, 558
PspOMI	GGGCCC	1 cut(s)	103
PspPI	GGNCC	8 cut(s)	103, 104, 124, 158, 196, 201, 324, 626
PsuI	RGATCY	1 cut(s)	503
PsyI	GACNNNGTC	1 cut(s)	128
PvuII	CAGCTG	1 cut(s)	238
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
Rsr2I	CGGWCCG	1 cut(s)	201
RsrII	CGGWCCG	1 cut(s)	201
SalI	GTCGAC	1 cut(s)	146
SaqAI	TTAA	3 cut(s)	176, 725, 730
SatI	GCNGC	8 cut(s)	297, 445, 448, 451, 454, 457, 583, 605
Sau3AI	GATC	3 cut(s)	412, 503, 660
Sau96I	GGNCC	8 cut(s)	103, 104, 124, 158, 196, 201, 324, 626
SchI	GAGTC	2 cut(s)	68, 638
ScrFI	CCNGG	3 cut(s)	205, 348, 564
SduI	GDGCHC	4 cut(s)	23, 107, 245, 488
SetI	ASST	9 cut(s)	144, 227, 240, 323, 392, 597, 675, 687, 717
SinI	GGWCC	2 cut(s)	124, 201
Sse9I	AATT	1 cut(s)	727
SspMI	CTAG	2 cut(s)	162, 666
StyD4I	CCNGG	3 cut(s)	203, 346, 562
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	2 cut(s)	392, 687
TaqI	TCGA	5 cut(s)	147, 352, 386, 521, 647
TasI	AATT	1 cut(s)	727
TauI	GCSGC	7 cut(s)	299, 447, 450, 453, 456, 459, 585
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	3 cut(s)	176, 725, 730
Tru9I	TTAA	3 cut(s)	176, 725, 730
TscAI	CASTG	1 cut(s)	383
TseI	GCWGC	1 cut(s)	604
TspDTI	ATGAA	2 cut(s)	26, 707
TspGWI	ACGGA	2 cut(s)	437, 557
TspRI	CASTG	1 cut(s)	383
Tth111I	GACNNNGTC	1 cut(s)	128
VpaK11BI	GGWCC	2 cut(s)	124, 201
VspI	ATTAAT	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	2 cut(s)	162, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.