Rh6AG466700
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
64904791 .. 64905549
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG466700.1

Sequence Viewer

Length: 759 bp
ATGGATGCAAATATTGCCATGAATATGTGCTCTTCTTCTACTTCTACCTCCGACTCTTCTTCCTCGGAGTCCTCGCAGCCCAGAAATCCCAACAAGGCCTACAGAATCAAGGGCCCGTGGAGCGCCGAGGAGGACCGGGTTCTCACCCGCCTCGTCGAGCGCTACGGCCCCAGAAATTGGTCTTTGATTAGCCGCTACATTAAGGGTCGCTCGGGCAAGTCCTGCAGGCTTAGGTGGTGCAACCAGCTCAGCCCCAGTGTCCAGCACCGTCCCTTTTCCCAAGCCGAAGACGAAACCATCCTCGCCGCGCACGCCCGCTACGGCAACCGGTGGGCCACCATTGCCCGGTTGCTCCCGGGCCGGACCGACAATGCGGTCAAGAACCACTGGAACTCGACCCTGAAGAGAAGGGTAAGAGAACCACAAGACCACCAAGAACTGGATCATCAGGGCGAGGGTAATATTGGCAATGCAGCGATTGAGGTGATGATGATGGGTAATACTACTACTAGTAGTGCTTCAGCTGCCTCCGGGCGTAATGGGTCCATGGATCTGGATGACCCGTTGACCGAGTTGACTCTGGCCACGCCGGGGATCGGTGGCTCTGTGGTGTCGTCGTCGGAACAACACCACCATCACCGGAGCAGCAGCGAGAGTTTTCCTCCGGCGGGGTTTTGGGATGTGATGAGGGGTGTGATTGCCAGGGAAGTTAGGGATTACGTCAGCTCGTCATTTTCAGAAACTTCTGGGCTTCATTGA

Protein Analysis

252

Amino Acids

27.86

Weight (kDa)

8.5

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 37 - 83 6.2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 40 - 99 8.6e-18 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 90 - 133 9.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 92 - 146 5.9e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016275)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 374
AccB7I CCANNNNNTGG 2 cut(s) 177, 439
AccII CGCG 1 cut(s) 308
AciI CCGC 6 cut(s) 148, 193, 306, 316, 374, 668
AclWI GGATC 3 cut(s) 450, 558, 602
AcoI YGGCCR 1 cut(s) 582
AcuI CTGAAG 2 cut(s) 422, 504
AfeI AGCGCT 1 cut(s) 161
AfiI CCNNNNNNNGG 6 cut(s) 177, 345, 439, 591, 596, 668
AgeI ACCGGT 1 cut(s) 327
AhlI ACTAGT 1 cut(s) 509
AjnI CCWGG 1 cut(s) 701
AluBI AGCT 3 cut(s) 247, 524, 726
AluI AGCT 3 cut(s) 247, 524, 726
Alw21I GWGCWC 1 cut(s) 32
AlwI GGATC 3 cut(s) 450, 558, 602
Ama87I CYCGRG 2 cut(s) 211, 355
Aor51HI AGCGCT 1 cut(s) 161
AoxI GGCC 6 cut(s) 96, 112, 166, 333, 358, 582
ApaI GGGCCC 1 cut(s) 116
ApeKI GCWGC 5 cut(s) 76, 473, 524, 645, 648
AsiGI ACCGGT 1 cut(s) 327
AspLEI GCGC 3 cut(s) 125, 162, 310
AspS9I GGNCC 8 cut(s) 112, 113, 133, 167, 333, 358, 363, 543
AsuC2I CCSGG 6 cut(s) 137, 346, 356, 357, 532, 591
AsuHPI GGTGA 3 cut(s) 136, 496, 629
AvaI CYCGRG 2 cut(s) 211, 355
AvaII GGWCC 3 cut(s) 133, 363, 543
BaeGI GKGCMC 1 cut(s) 116
BalI TGGCCA 1 cut(s) 584
BanII GRGCYC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 5 cut(s) 88, 485, 511, 657, 660
BccI CCATC 3 cut(s) 305, 487, 642
BceAI ACGGC 2 cut(s) 181, 337
BciT130I CCWGG 1 cut(s) 703
BcnI CCSGG 6 cut(s) 137, 346, 356, 357, 532, 591
BcuI ACTAGT 1 cut(s) 509
BfaI CTAG 1 cut(s) 510
BfmI CTRYAG 2 cut(s) 100, 223
BfoI RGCGCY 2 cut(s) 126, 163
BisI GCNGC 7 cut(s) 77, 193, 306, 474, 525, 646, 649
BlpI GCTNAGC 1 cut(s) 248
BlsI GCNGC 7 cut(s) 78, 194, 307, 475, 526, 647, 650
Bme1390I CCNGG 7 cut(s) 137, 346, 356, 357, 532, 591, 703
Bme18I GGWCC 3 cut(s) 133, 363, 543
BmeT110I CYCGRG 2 cut(s) 211, 355
BmgT120I GGNCC 8 cut(s) 112, 113, 133, 167, 333, 358, 363, 543
BmiI GGNNCC 3 cut(s) 114, 169, 544
BmrFI CCNGG 7 cut(s) 137, 346, 356, 357, 532, 591, 703
BmrI ACTGGG 1 cut(s) 249
BmuI ACTGGG 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 294
BplI GAGNNNNNCTC 2 cut(s) 646, 678
Bpu10I CCTNAGC 1 cut(s) 230
Bpu1102I GCTNAGC 1 cut(s) 248
BpuMI CCSGG 6 cut(s) 137, 346, 356, 357, 532, 591
BsaJI CCNNGG 7 cut(s) 63, 116, 126, 355, 546, 590, 702
BsaWI WCCGGW 2 cut(s) 327, 639
Bsc4I CCNNNNNNNGG 6 cut(s) 177, 345, 439, 591, 596, 668
Bse118I RCCGGY 1 cut(s) 327
Bse1I ACTGG 3 cut(s) 255, 392, 444
Bse3DI GCAATG 2 cut(s) 339, 475
BseBI CCWGG 1 cut(s) 703
BseDI CCNNGG 7 cut(s) 63, 116, 126, 355, 546, 590, 702
BseGI GGATG 4 cut(s) 10, 297, 562, 685
BseLI CCNNNNNNNGG 6 cut(s) 177, 345, 439, 591, 596, 668
BseMI GCAATG 2 cut(s) 339, 475
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 3 cut(s) 255, 392, 444
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 5 cut(s) 88, 485, 511, 657, 660
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 6 cut(s) 98, 114, 168, 335, 360, 584
BshTI ACCGGT 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 2 cut(s) 211, 355
BsiSI CCGG 9 cut(s) 136, 328, 346, 356, 361, 531, 590, 640, 665
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 6 cut(s) 177, 345, 439, 591, 596, 668
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 6 cut(s) 98, 114, 168, 335, 360, 584
BsoBI CYCGRG 2 cut(s) 211, 355
Bsp120I GGGCCC 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 32, 116
Bsp143I GATC 3 cut(s) 442, 550, 594
Bsp1720I GCTNAGC 1 cut(s) 248
Bsp19I CCATGG 1 cut(s) 546
BspACI CCGC 6 cut(s) 148, 193, 306, 316, 374, 668
BspANI GGCC 6 cut(s) 98, 114, 168, 335, 360, 584
BspCNI CTCAG 1 cut(s) 261
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 3 cut(s) 114, 169, 544
BspMAI CTGCAG 1 cut(s) 227
BspPI GGATC 3 cut(s) 450, 558, 602
BspQI GCTCTTC 1 cut(s) 37
BsrDI GCAATG 2 cut(s) 339, 475
BsrFI RCCGGY 1 cut(s) 327
BsrI ACTGG 3 cut(s) 255, 392, 444
BssAI RCCGGY 1 cut(s) 327
BssECI CCNNGG 7 cut(s) 63, 116, 126, 355, 546, 590, 702
BssMI GATC 3 cut(s) 442, 550, 594
BssT1I CCWWGG 1 cut(s) 546
Bst2UI CCWGG 1 cut(s) 703
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 3 cut(s) 37, 61, 398
BstAPI GCANNNNNTGC 2 cut(s) 14, 222
BstC8I GCNNGC 3 cut(s) 227, 312, 316
BstDEI CTNAG 2 cut(s) 230, 248
BstDSI CCRYGG 2 cut(s) 116, 546
BstF5I GGATG 4 cut(s) 10, 297, 562, 685
BstFNI CGCG 1 cut(s) 308
BstH2I RGCGCY 2 cut(s) 126, 163
BstHHI GCGC 3 cut(s) 125, 162, 310
BstKTI GATC 3 cut(s) 445, 553, 597
BstMBI GATC 3 cut(s) 442, 550, 594
BstMWI GCNNNNNNNGC 6 cut(s) 14, 120, 222, 311, 341, 524
BstNI CCWGG 1 cut(s) 703
BstSCI CCNGG 7 cut(s) 135, 344, 354, 355, 530, 589, 701
BstSFI CTRYAG 2 cut(s) 100, 223
BstSLI GKGCMC 1 cut(s) 116
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 5 cut(s) 88, 485, 511, 657, 660
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 550
BstXI CCANNNNNNTGG 1 cut(s) 553
BstYI RGATCY 1 cut(s) 550
BsuRI GGCC 6 cut(s) 98, 114, 168, 335, 360, 584
BtgI CCRYGG 2 cut(s) 116, 546
BtsCI GGATG 4 cut(s) 10, 297, 562, 685
BtsIMutI CAGTG 2 cut(s) 262, 385
Cac8I GCNNGC 3 cut(s) 227, 312, 316
CfoI GCGC 3 cut(s) 125, 162, 310
Cfr10I RCCGGY 1 cut(s) 327
Cfr13I GGNCC 8 cut(s) 112, 113, 133, 167, 333, 358, 363, 543
Cfr9I CCCGGG 1 cut(s) 355
CpoI CGGWCCG 1 cut(s) 363
CspAI ACCGGT 1 cut(s) 327
CspI CGGWCCG 1 cut(s) 363
CviAII CATG 2 cut(s) 19, 547
DdeI CTNAG 2 cut(s) 230, 248
DpnI GATC 3 cut(s) 444, 552, 596
DpnII GATC 3 cut(s) 442, 550, 594
DrdI GACNNNNNNGTC 1 cut(s) 374
DseDI GACNNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 1 cut(s) 582
Eam1104I CTCTTC 3 cut(s) 37, 61, 398
EarI CTCTTC 3 cut(s) 37, 61, 398
Eco130I CCWWGG 1 cut(s) 546
Eco147I AGGCCT 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 116
Eco47I GGWCC 3 cut(s) 133, 363, 543
Eco47III AGCGCT 1 cut(s) 161
Eco57I CTGAAG 2 cut(s) 422, 504
Eco88I CYCGRG 2 cut(s) 211, 355
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 701
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 2 cut(s) 22, 550
FaiI YATR 3 cut(s) 20, 26, 548
FaqI GGGAC 1 cut(s) 255
FatI CATG 2 cut(s) 18, 546
FauI CCCGC 3 cut(s) 155, 323, 661
Fnu4HI GCNGC 7 cut(s) 77, 193, 306, 474, 525, 646, 649
FokI GGATG 4 cut(s) 17, 284, 569, 692
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 7 cut(s) 77, 193, 306, 474, 525, 646, 649
FspBI CTAG 1 cut(s) 510
GlaI GCGC 3 cut(s) 124, 161, 309
GluI GCNGC 7 cut(s) 77, 193, 306, 474, 525, 646, 649
HaeII RGCGCY 2 cut(s) 126, 163
HaeIII GGCC 6 cut(s) 98, 114, 168, 335, 360, 584
HapII CCGG 9 cut(s) 136, 328, 346, 356, 361, 531, 590, 640, 665
HhaI GCGC 3 cut(s) 125, 162, 310
Hin1II CATG 2 cut(s) 22, 550
Hin6I GCGC 3 cut(s) 123, 160, 308
HinP1I GCGC 3 cut(s) 123, 160, 308
HincII GTYRAC 2 cut(s) 567, 576
HindII GTYRAC 2 cut(s) 567, 576
HinfI GANTC 4 cut(s) 53, 68, 105, 577
HpaII CCGG 9 cut(s) 136, 328, 346, 356, 361, 531, 590, 640, 665
HphI GGTGA 3 cut(s) 136, 496, 629
Hpy166II GTNNAC 2 cut(s) 567, 576
Hpy188I TCNGA 4 cut(s) 52, 67, 622, 739
Hpy188III TCNNGA 2 cut(s) 379, 554
Hpy8I GTNNAC 2 cut(s) 567, 576
Hpy99I CGWCG 3 cut(s) 158, 619, 622
HpyAV CCTTC 1 cut(s) 402
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 720
HpyCH4V TGCA 4 cut(s) 8, 225, 240, 473
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 120, 222, 311, 341, 524
HpyF3I CTNAG 2 cut(s) 230, 248
HpySE526I ACGT 1 cut(s) 720
Hsp92II CATG 2 cut(s) 22, 550
HspAI GCGC 3 cut(s) 123, 160, 308
Kzo9I GATC 3 cut(s) 442, 550, 594
LguI GCTCTTC 1 cut(s) 37
LmnI GCTCC 3 cut(s) 120, 357, 642
Lsp1109I GCAGC 5 cut(s) 88, 485, 511, 657, 660
MaeI CTAG 1 cut(s) 510
MaeII ACGT 1 cut(s) 720
MalI GATC 3 cut(s) 444, 552, 596
MboI GATC 3 cut(s) 442, 550, 594
MboII GAAGA 6 cut(s) 24, 27, 48, 51, 299, 415
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 2 cut(s) 32, 116
MlsI TGGCCA 1 cut(s) 584
MluCI AATT 1 cut(s) 175
MluNI TGGCCA 1 cut(s) 584
MlyI GAGTC 3 cut(s) 47, 77, 571
MmeI TCCRAC 2 cut(s) 75, 600
Mox20I TGGCCA 1 cut(s) 584
MscI TGGCCA 1 cut(s) 584
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 23
Msp20I TGGCCA 1 cut(s) 584
MspA1I CMGCKG 1 cut(s) 524
MspI CCGG 9 cut(s) 136, 328, 346, 356, 361, 531, 590, 640, 665
MspR9I CCNGG 7 cut(s) 137, 346, 356, 357, 532, 591, 703
MvaI CCWGG 1 cut(s) 703
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 6 cut(s) 14, 120, 222, 311, 341, 524
NciI CCSGG 6 cut(s) 137, 346, 356, 357, 532, 591
NcoI CCATGG 1 cut(s) 546
NdeII GATC 3 cut(s) 442, 550, 594
NlaIII CATG 2 cut(s) 22, 550
NlaIV GGNNCC 3 cut(s) 114, 169, 544
NmeAIII GCCGAG 1 cut(s) 151
PceI AGGCCT 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 105
PflMI CCANNNNNTGG 2 cut(s) 177, 439
PinAI ACCGGT 1 cut(s) 327
PkrI GCNGC 7 cut(s) 78, 194, 307, 475, 526, 647, 650
PleI GAGTC 3 cut(s) 47, 76, 571
PpsI GAGTC 3 cut(s) 47, 76, 571
Psp6I CCWGG 1 cut(s) 701
PspGI CCWGG 1 cut(s) 701
PspN4I GGNNCC 3 cut(s) 114, 169, 544
PspOMI GGGCCC 1 cut(s) 112
PspPI GGNCC 8 cut(s) 112, 113, 133, 167, 333, 358, 363, 543
PstI CTGCAG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 550
PvuII CAGCTG 1 cut(s) 524
RseI CAYNNNNRTG 1 cut(s) 23
Rsr2I CGGWCCG 1 cut(s) 363
RsrII CGGWCCG 1 cut(s) 363
SapI GCTCTTC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 7 cut(s) 77, 193, 306, 474, 525, 646, 649
Sau3AI GATC 3 cut(s) 442, 550, 594
Sau96I GGNCC 8 cut(s) 112, 113, 133, 167, 333, 358, 363, 543
SbfI CCTGCAGG 1 cut(s) 227
SchI GAGTC 3 cut(s) 47, 77, 571
ScrFI CCNGG 7 cut(s) 137, 346, 356, 357, 532, 591, 703
SdaI CCTGCAGG 1 cut(s) 227
SduI GDGCHC 2 cut(s) 32, 116
SetI ASST 7 cut(s) 50, 236, 249, 486, 526, 723, 728
SfcI CTRYAG 2 cut(s) 100, 223
SinI GGWCC 3 cut(s) 133, 363, 543
SmaI CCCGGG 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 23
SpeI ACTAGT 1 cut(s) 509
Sse8387I CCTGCAGG 1 cut(s) 227
Sse9I AATT 1 cut(s) 175
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 6 cut(s) 148, 193, 306, 316, 374, 668
SspI AATATT 2 cut(s) 13, 463
SspMI CTAG 1 cut(s) 510
StuI AGGCCT 1 cut(s) 98
StyD4I CCNGG 7 cut(s) 135, 344, 354, 355, 530, 589, 701
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 1 cut(s) 723
TaqI TCGA 2 cut(s) 156, 395
TaqII GACCGA 2 cut(s) 380, 584
TasI AATT 1 cut(s) 175
TauI GCSGC 2 cut(s) 195, 308
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 2 cut(s) 262, 392
TseI GCWGC 5 cut(s) 76, 473, 524, 645, 648
TspDTI ATGAA 2 cut(s) 35, 743
TspMI CCCGGG 1 cut(s) 355
TspRI CASTG 2 cut(s) 262, 392
Van91I CCANNNNNTGG 2 cut(s) 177, 439
VpaK11BI GGWCC 3 cut(s) 133, 363, 543
XmaI CCCGGG 1 cut(s) 355
XspI CTAG 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.