pycom15g08260
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
5161554 .. 5162270
717 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g08260.1

Sequence Viewer

Length: 717 bp
ATGGAAGCATTGAATATTTGCTCGTCTTCTGCCTCGTCTTCCGACACGTCCTCGTCGGAGTCTTCTCTTCCGAGAAATCCCAATAAGCCCGAACGAATCAAGGGCCCGTGGAGCGCTGAGGAGGACCGGGTCTTGACCCGGCTCGTCGAGCGCTACGGGCCTAGAAACTGGTCATTGATAAGCCGGTATATAAAGGGACGGTCCGGGAAGTCGTGCAGGCTAAGGTGGTGCAACCAGCTGAGCCCGAGCGTCCAGCATCGATCCTTTTCGCAGGCCGAGGACGAGACCATCTTGGCCGCACAGGCCCGGTTCGGAAACAGATGGGCCACCATTGCGCGCCTGCTTCCGGGTCGAACCGACAACGCGGTGAAAAATCACTGGAACTCCACGTTGAAGCGGAGGGTCAGGGGAGATCAACTAACGGAGGTTGGCAGTTTTCTTGGCGCCGGCGGCAATGTGGGTAGCAATGAGGGGATGAGCACGAGTTCGGTTTCCGGATCTTTGGTTAATGGGTCGATGGAGTTTGACCCGTTGACGGAGTTGACTTTGGCACCGCCGGGGATTGGTAGCGGAAGCGGCGGGGCGATGGTGGCGGAGCAGCGGAGGAATAATGAGAGTGTGCCGGCGGGGTTTTGGGACGCGATGAGGGATGTGATTGCCAGGGAGGTTAGAGATTACGTGACGACAACATTTTCAGAGCCTTCGGGGCTTCTTTGA

Protein Analysis

239

Amino Acids

25.92

Weight (kDa)

9.18

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 34 - 80 5.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 37 - 96 3.1e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 88 - 130 1.4e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 89 - 138 1.4e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016275)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 443, 550
AccII CGCG 3 cut(s) 337, 365, 641
AccIII TCCGGA 1 cut(s) 494
AclWI GGATC 2 cut(s) 255, 505
AcoI YGGCCR 1 cut(s) 294
AcyI GRCGYC 1 cut(s) 444
AfeI AGCGCT 2 cut(s) 115, 152
AfiI CCNNNNNNNGG 3 cut(s) 346, 535, 563
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 2 cut(s) 13, 394
AjiI CACGTC 1 cut(s) 48
AjnI CCWGG 1 cut(s) 659
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw21I GWGCWC 1 cut(s) 482
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 2 cut(s) 255, 505
Ama87I CYCGRG 1 cut(s) 244
Aor13HI TCCGGA 1 cut(s) 494
Aor51HI AGCGCT 2 cut(s) 115, 152
AoxI GGCC 6 cut(s) 103, 158, 273, 294, 303, 324
ApaI GGGCCC 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 598
AspLEI GCGC 5 cut(s) 116, 153, 337, 339, 446
AspS9I GGNCC 7 cut(s) 103, 104, 124, 158, 201, 304, 324
AsuC2I CCSGG 6 cut(s) 128, 139, 205, 307, 348, 558
AsuHPI GGTGA 1 cut(s) 379
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 2 cut(s) 124, 201
BaeGI GKGCMC 1 cut(s) 107
BanI GGYRCC 2 cut(s) 443, 550
BanII GRGCYC 2 cut(s) 107, 245
BauI CACGAG 1 cut(s) 481
BbsI GAAGAC 3 cut(s) 18, 30, 54
Bbv12I GWGCWC 1 cut(s) 482
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 610
BccI CCATC 4 cut(s) 296, 315, 511, 580
BciT130I CCWGG 1 cut(s) 661
BcnI CCSGG 6 cut(s) 128, 139, 205, 307, 348, 558
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 162
BfoI RGCGCY 3 cut(s) 117, 154, 447
BglI GCCNNNNNGGC 2 cut(s) 302, 706
BisI GCNGC 4 cut(s) 297, 451, 577, 599
BlpI GCTNAGC 1 cut(s) 239
BlsI GCNGC 4 cut(s) 298, 452, 578, 600
Bme1390I CCNGG 7 cut(s) 128, 139, 205, 307, 348, 558, 661
Bme18I GGWCC 2 cut(s) 124, 201
BmeT110I CYCGRG 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 48
BmgT120I GGNCC 7 cut(s) 103, 104, 124, 158, 201, 304, 324
BmiI GGNNCC 3 cut(s) 105, 445, 552
BmrFI CCNGG 7 cut(s) 128, 139, 205, 307, 348, 558, 661
BmsI GCATC 1 cut(s) 265
BpiI GAAGAC 3 cut(s) 18, 30, 54
Bpu10I CCTNAGC 2 cut(s) 117, 221
Bpu1102I GCTNAGC 1 cut(s) 239
BpuMI CCSGG 6 cut(s) 128, 139, 205, 307, 348, 558
Bsa29I ATCGAT 1 cut(s) 259
BsaAI YACGTR 1 cut(s) 679
BsaHI GRCGYC 1 cut(s) 444
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 4 cut(s) 107, 276, 557, 660
BsaWI WCCGGW 1 cut(s) 494
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 3 cut(s) 346, 535, 563
Bse118I RCCGGY 3 cut(s) 183, 446, 622
Bse1I ACTGG 2 cut(s) 173, 383
Bse3DI GCAATG 3 cut(s) 330, 460, 472
BseAI TCCGGA 1 cut(s) 494
BseBI CCWGG 1 cut(s) 661
BseCI ATCGAT 1 cut(s) 259
BseDI CCNNGG 4 cut(s) 107, 276, 557, 660
BseGI GGATG 2 cut(s) 480, 655
BseLI CCNNNNNNNGG 3 cut(s) 346, 535, 563
BseMI GCAATG 3 cut(s) 330, 460, 472
BseMII CTCAG 2 cut(s) 108, 230
BseNI ACTGG 2 cut(s) 173, 383
BsePI GCGCGC 1 cut(s) 335
BseRI GAGGAG 1 cut(s) 134
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 1 cut(s) 610
BsgI GTGCAG 1 cut(s) 235
Bsh1236I CGCG 3 cut(s) 337, 365, 641
BshFI GGCC 6 cut(s) 105, 160, 275, 296, 305, 326
BshNI GGYRCC 2 cut(s) 443, 550
BshVI ATCGAT 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 482
BsiHKCI CYCGRG 1 cut(s) 244
BslFI GGGAC 2 cut(s) 210, 650
BslI CCNNNNNNNGG 3 cut(s) 346, 535, 563
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 2 cut(s) 210, 650
BsnI GGCC 6 cut(s) 105, 160, 275, 296, 305, 326
Bso31I GGTCTC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 244
Bsp120I GGGCCC 1 cut(s) 103
Bsp1286I GDGCHC 3 cut(s) 107, 245, 482
Bsp13I TCCGGA 1 cut(s) 494
Bsp143I GATC 3 cut(s) 260, 412, 497
Bsp1720I GCTNAGC 1 cut(s) 239
BspANI GGCC 6 cut(s) 105, 160, 275, 296, 305, 326
BspCNI CTCAG 2 cut(s) 109, 231
BspDI ATCGAT 1 cut(s) 259
BspEI TCCGGA 1 cut(s) 494
BspFNI CGCG 3 cut(s) 337, 365, 641
BspLI GGNNCC 3 cut(s) 105, 445, 552
BspPI GGATC 2 cut(s) 255, 505
BspT107I GGYRCC 2 cut(s) 443, 550
BspTNI GGTCTC 1 cut(s) 278
BsrDI GCAATG 3 cut(s) 330, 460, 472
BsrFI RCCGGY 3 cut(s) 183, 446, 622
BsrI ACTGG 2 cut(s) 173, 383
BssAI RCCGGY 3 cut(s) 183, 446, 622
BssECI CCNNGG 4 cut(s) 107, 276, 557, 660
BssHII GCGCGC 1 cut(s) 335
BssMI GATC 3 cut(s) 260, 412, 497
BssNI GRCGYC 1 cut(s) 444
BssSI CACGAG 1 cut(s) 481
Bst2BI CACGAG 1 cut(s) 481
Bst2UI CCWGG 1 cut(s) 661
Bst4CI ACNGT 1 cut(s) 201
Bst6I CTCTTC 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 444
BstBAI YACGTR 1 cut(s) 679
BstC8I GCNNGC 6 cut(s) 218, 273, 337, 341, 448, 624
BstDEI CTNAG 3 cut(s) 117, 221, 239
BstDSI CCRYGG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 480, 655
BstFNI CGCG 3 cut(s) 337, 365, 641
BstH2I RGCGCY 3 cut(s) 117, 154, 447
BstHHI GCGC 5 cut(s) 116, 153, 337, 339, 446
BstKTI GATC 3 cut(s) 263, 415, 500
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 3 cut(s) 260, 412, 497
BstMWI GCNNNNNNNGC 9 cut(s) 111, 148, 157, 302, 332, 450, 576, 590, 706
BstNI CCWGG 1 cut(s) 661
BstSCI CCNGG 7 cut(s) 126, 137, 203, 305, 346, 556, 659
BstSLI GKGCMC 1 cut(s) 107
BstUI CGCG 3 cut(s) 337, 365, 641
BstV1I GCAGC 1 cut(s) 610
BstV2I GAAGAC 3 cut(s) 18, 30, 54
BstX2I RGATCY 1 cut(s) 497
BstYI RGATCY 1 cut(s) 497
Bsu15I ATCGAT 1 cut(s) 259
BsuRI GGCC 6 cut(s) 105, 160, 275, 296, 305, 326
BsuTUI ATCGAT 1 cut(s) 259
BtgI CCRYGG 1 cut(s) 107
BtgZI GCGATG 2 cut(s) 599, 656
BtrI CACGTC 1 cut(s) 48
BtsCI GGATG 2 cut(s) 480, 655
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 6 cut(s) 218, 273, 337, 341, 448, 624
CfoI GCGC 5 cut(s) 116, 153, 337, 339, 446
Cfr10I RCCGGY 3 cut(s) 183, 446, 622
Cfr13I GGNCC 7 cut(s) 103, 104, 124, 158, 201, 304, 324
ClaI ATCGAT 1 cut(s) 259
CpoI CGGWCCG 1 cut(s) 201
CseI GACGC 2 cut(s) 238, 647
CspI CGGWCCG 1 cut(s) 201
DdeI CTNAG 3 cut(s) 117, 221, 239
DinI GGCGCC 1 cut(s) 445
DpnI GATC 3 cut(s) 262, 414, 499
DpnII GATC 3 cut(s) 260, 412, 497
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
EciI GGCGGA 1 cut(s) 608
Eco24I GRGCYC 2 cut(s) 107, 245
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 2 cut(s) 124, 201
Eco47III AGCGCT 2 cut(s) 115, 152
Eco88I CYCGRG 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 659
EcoT38I GRGCYC 2 cut(s) 107, 245
EgeI GGCGCC 1 cut(s) 445
EheI GGCGCC 1 cut(s) 445
FaiI YATR 2 cut(s) 189, 191
FaqI GGGAC 2 cut(s) 210, 650
FauI CCCGC 2 cut(s) 572, 619
Fnu4HI GCNGC 4 cut(s) 297, 451, 577, 599
FokI GGATG 2 cut(s) 487, 662
FriOI GRGCYC 2 cut(s) 107, 245
Fsp4HI GCNGC 4 cut(s) 297, 451, 577, 599
FspBI CTAG 1 cut(s) 162
GlaI GCGC 5 cut(s) 115, 152, 336, 338, 445
GluI GCNGC 4 cut(s) 297, 451, 577, 599
HaeII RGCGCY 3 cut(s) 117, 154, 447
HaeIII GGCC 6 cut(s) 105, 160, 275, 296, 305, 326
HgaI GACGC 2 cut(s) 238, 647
HhaI GCGC 5 cut(s) 116, 153, 337, 339, 446
Hin1I GRCGYC 1 cut(s) 444
Hin6I GCGC 5 cut(s) 114, 151, 335, 337, 444
HinP1I GCGC 5 cut(s) 114, 151, 335, 337, 444
HincII GTYRAC 2 cut(s) 534, 543
HindII GTYRAC 2 cut(s) 534, 543
HinfI GANTC 2 cut(s) 59, 96
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 2 cut(s) 534, 543
Hpy188I TCNGA 5 cut(s) 43, 58, 72, 314, 697
Hpy188III TCNNGA 2 cut(s) 133, 495
Hpy8I GTNNAC 2 cut(s) 534, 543
Hpy99I CGWCG 2 cut(s) 58, 149
HpyAV CCTTC 1 cut(s) 711
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4IV ACGT 3 cut(s) 47, 389, 678
HpyCH4V TGCA 2 cut(s) 216, 231
HpyF10VI GCNNNNNNNGC 9 cut(s) 111, 148, 157, 302, 332, 450, 576, 590, 706
HpyF3I CTNAG 3 cut(s) 117, 221, 239
HpySE526I ACGT 3 cut(s) 47, 389, 678
Hsp92I GRCGYC 1 cut(s) 444
HspAI GCGC 5 cut(s) 114, 151, 335, 337, 444
KasI GGCGCC 1 cut(s) 443
Kpn2I TCCGGA 1 cut(s) 494
KroI GCCGGC 2 cut(s) 446, 622
KroNI GCCGGC 2 cut(s) 448, 624
Kzo9I GATC 3 cut(s) 260, 412, 497
LmnI GCTCC 2 cut(s) 111, 595
Lsp1109I GCAGC 1 cut(s) 610
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 162
MaeII ACGT 3 cut(s) 47, 389, 678
MaeIII GTNAC 1 cut(s) 679
MalI GATC 3 cut(s) 262, 414, 499
MboI GATC 3 cut(s) 260, 412, 497
MboII GAAGA 4 cut(s) 18, 30, 54, 59
MflI RGATCY 1 cut(s) 497
MhlI GDGCHC 3 cut(s) 107, 245, 482
Mly113I GGCGCC 1 cut(s) 444
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 2 cut(s) 36, 66
MreI CGCCGGCG 1 cut(s) 446
MroI TCCGGA 1 cut(s) 494
MroNI GCCGGC 2 cut(s) 446, 622
MseI TTAA 1 cut(s) 507
MspA1I CMGCKG 2 cut(s) 238, 601
MspR9I CCNGG 7 cut(s) 128, 139, 205, 307, 348, 558, 661
MvaI CCWGG 1 cut(s) 661
MvnI CGCG 3 cut(s) 337, 365, 641
MwoI GCNNNNNNNGC 9 cut(s) 111, 148, 157, 302, 332, 450, 576, 590, 706
NaeI GCCGGC 2 cut(s) 448, 624
NarI GGCGCC 1 cut(s) 444
NciI CCSGG 6 cut(s) 128, 139, 205, 307, 348, 558
NdeII GATC 3 cut(s) 260, 412, 497
NgoMIV GCCGGC 2 cut(s) 446, 622
NlaIV GGNNCC 3 cut(s) 105, 445, 552
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 679
PauI GCGCGC 1 cut(s) 335
PdiI GCCGGC 2 cut(s) 448, 624
PfeI GAWTC 1 cut(s) 96
PflFI GACNNNGTC 1 cut(s) 128
PfoI TCCNGGA 1 cut(s) 203
PkrI GCNGC 4 cut(s) 298, 452, 578, 600
PleI GAGTC 1 cut(s) 67
PluTI GGCGCC 1 cut(s) 447
PpsI GAGTC 1 cut(s) 67
Ppu21I YACGTR 1 cut(s) 679
Psp6I CCWGG 1 cut(s) 659
PspGI CCWGG 1 cut(s) 659
PspN4I GGNNCC 3 cut(s) 105, 445, 552
PspOMI GGGCCC 1 cut(s) 103
PspPI GGNCC 7 cut(s) 103, 104, 124, 158, 201, 304, 324
PsuI RGATCY 1 cut(s) 497
PsyI GACNNNGTC 1 cut(s) 128
PteI GCGCGC 1 cut(s) 335
PvuII CAGCTG 1 cut(s) 238
Rsr2I CGGWCCG 1 cut(s) 201
RsrII CGGWCCG 1 cut(s) 201
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 4 cut(s) 297, 451, 577, 599
Sau3AI GATC 3 cut(s) 260, 412, 497
Sau96I GGNCC 7 cut(s) 103, 104, 124, 158, 201, 304, 324
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 7 cut(s) 128, 139, 205, 307, 348, 558, 661
SduI GDGCHC 3 cut(s) 107, 245, 482
SetI ASST 7 cut(s) 50, 227, 240, 392, 429, 669, 681
SfaNI GCATC 1 cut(s) 265
SfiI GGCCNNNNNGGCC 1 cut(s) 302
SfoI GGCGCC 1 cut(s) 445
SgrAI CRCCGGYG 1 cut(s) 446
SinI GGWCC 2 cut(s) 124, 201
SspDI GGCGCC 1 cut(s) 443
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 7 cut(s) 126, 137, 203, 305, 346, 556, 659
TaaI ACNGT 1 cut(s) 201
TaiI ACGT 3 cut(s) 50, 392, 681
TaqI TCGA 4 cut(s) 147, 259, 352, 515
TauI GCSGC 3 cut(s) 299, 453, 579
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 1 cut(s) 383
TseFI GTSAC 1 cut(s) 679
TseI GCWGC 1 cut(s) 598
Tsp45I GTSAC 1 cut(s) 679
TspGWI ACGGA 2 cut(s) 437, 551
TspRI CASTG 1 cut(s) 383
Tth111I GACNNNGTC 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 124, 201
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.