Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0016275

Physical Location & Seq

Genomic Coordinates Forward (+)

9428392 .. 9429258

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1107400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCACCTCGCCCCTAAATATAACACCCAAAACACAACCTTTCTCTCATTCACACCTCCTCCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTTGCACTCACTCCTCACTCAGCTCGAACAAACACCATCACTATTTCCATGGAAGCGATGAATATGTGCTCGTCATCTACTTCGTCTTCCGGCACTTCCTCGTCTGAGTCTTCCCTCCGGAGAAATCCCAACAAGCCCGAACGAATCAAGGGCCCGTGGAGCGCTGAGGAGGACCGGGTCCTGACCCAGCTCGTCGACCGCTACGGGCCTAGAAACTGGTCATTGATAAGCCGGTACATAAAAGGTCGATCTGGGAAGTCGTGCAGGCTCAGGTGGTGCAACCAGCTGAGTCCCAGCGTCCAGCATCGACCCTTCTCTCAGGCCGAGGACGAGACCATCTTGGCCGCACACGCTCGGTTCGGAAACAGGTGGGCCACCATTGCCCGCCTGCTTCCGGGTCGAACTGACAACGCGGTGAAAAATCACTGGAACTCGACGTTGAAGCGGAGGGTCAGGGGAGATCAACTAACGGAGGGTGGTAGTTTTGGGGGCGGCGGCGGCGGCAATGTGAGTAGTAATGAGGGGATGAGCACGAGTTCGGTTTCCGGATCTTTGGCCAATGGGTCGATGGAGTTTGACCCGTTGACGGAGTTGACTTTGGCACCGCCGGGGATTGGTAGCGGAAGCGGCGGGGCGATGGTGGGGGAACAGCAGAGGAATAATGAGAGTGTGCCGTCGGGGTTTTGGGACGCGATGAGGGATGTGATCGCTAGGGAGGTTAGAGATTACGTGGCGACAACATTTTCAGAGCCTTCGGAGCTTCATAGATTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

289

Amino Acids

31.34

Weight (kDa)

9.5

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	80 - 126	1.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	83 - 142	1.3e-17	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	133 - 176	4.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	135 - 184	5.4e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35010
malus_domestica	MD08G1107400.v1.1 MD15G1088000.v1.1
prunus_persica	Prupe.1G441700_v2.0.a1
pyrus_communis	pycom08g08930 pycom15g08260
rosa_chinensis	RchiOBHm_Chr6g0307001
rosa_laevigata	RLG00000010748
rosa_roxburghii	Rroxscaffold_7G00161290
rosa_rugosa	Rorug06G0354900
rosa_samantha	Rh6AG466700 Rh6BG434300 Rh6CG481700 Rh6DG468000
rosa_wichuraiana	Rw6G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	691
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	2 cut(s)	503, 782
AccIII	TCCGGA	2 cut(s)	207, 635
AclWI	GGATC	1 cut(s)	646
AcoI	YGGCCR	2 cut(s)	432, 645
AfaI	GTAC	1 cut(s)	326
AfeI	AGCGCT	1 cut(s)	253
AfiI	CCNNNNNNNGG	3 cut(s)	484, 676, 704
AgsI	TTSAA	1 cut(s)	532
AluBI	AGCT	4 cut(s)	113, 280, 376, 850
AluI	AGCT	4 cut(s)	113, 280, 376, 850
Alw21I	GWGCWC	2 cut(s)	161, 623
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	1 cut(s)	646
Aor13HI	TCCGGA	2 cut(s)	207, 635
Aor51HI	AGCGCT	1 cut(s)	253
AoxI	GGCC	6 cut(s)	241, 296, 411, 432, 462, 645
ApaI	GGGCCC	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	6 cut(s)	241, 242, 262, 268, 296, 462
AsuC2I	CCSGG	3 cut(s)	266, 486, 699
AsuHPI	GGTGA	1 cut(s)	517
AvaII	GGWCC	2 cut(s)	262, 268
BaeGI	GKGCMC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	647
BanI	GGYRCC	1 cut(s)	691
BanII	GRGCYC	1 cut(s)	245
BauI	CACGAG	1 cut(s)	622
BbsI	GAAGAC	2 cut(s)	168, 192
Bbv12I	GWGCWC	2 cut(s)	161, 623
BbvCI	CCTCAGC	1 cut(s)	255
BccI	CCATC	4 cut(s)	134, 434, 652, 721
BceAI	ACGGC	1 cut(s)	748
BcnI	CCSGG	3 cut(s)	266, 486, 699
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	2 cut(s)	300, 801
BfoI	RGCGCY	1 cut(s)	255
BisI	GCNGC	6 cut(s)	435, 583, 586, 589, 592, 718
BlsI	GCNGC	6 cut(s)	436, 584, 587, 590, 593, 719
Bme1390I	CCNGG	3 cut(s)	266, 486, 699
Bme18I	GGWCC	2 cut(s)	262, 268
BmgT120I	GGNCC	6 cut(s)	241, 242, 262, 268, 296, 462
BmiI	GGNNCC	3 cut(s)	243, 269, 693
BmrFI	CCNGG	3 cut(s)	266, 486, 699
BmsI	GCATC	1 cut(s)	403
BpiI	GAAGAC	2 cut(s)	168, 192
Bpu10I	CCTNAGC	2 cut(s)	255, 359
BpuMI	CCSGG	3 cut(s)	266, 486, 699
BsaAI	YACGTR	1 cut(s)	820
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	4 cut(s)	138, 245, 414, 698
BsaWI	WCCGGW	2 cut(s)	207, 635
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bsc4I	CCNNNNNNNGG	3 cut(s)	484, 676, 704
Bse118I	RCCGGY	1 cut(s)	321
Bse1I	ACTGG	2 cut(s)	311, 521
Bse3DI	GCAATG	2 cut(s)	468, 601
BseAI	TCCGGA	2 cut(s)	207, 635
BseDI	CCNNGG	4 cut(s)	138, 245, 414, 698
BseGI	GGATG	2 cut(s)	621, 796
BseLI	CCNNNNNNNGG	3 cut(s)	484, 676, 704
BseMI	GCAATG	2 cut(s)	468, 601
BseMII	CTCAG	6 cut(s)	123, 186, 246, 368, 373, 422
BseNI	ACTGG	2 cut(s)	311, 521
BseRI	GAGGAG	4 cut(s)	48, 51, 93, 272
BseSI	GKGCMC	1 cut(s)	245
BseYI	CCCAGC	2 cut(s)	276, 383
BsgI	GTGCAG	1 cut(s)	373
Bsh1236I	CGCG	2 cut(s)	503, 782
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	6 cut(s)	243, 298, 413, 434, 464, 647
BshNI	GGYRCC	1 cut(s)	691
BsiEI	CGRYCG	1 cut(s)	289
BsiHKAI	GWGCWC	2 cut(s)	161, 623
BsiSI	CCGG	7 cut(s)	180, 208, 265, 322, 485, 636, 698
BslFI	GGGAC	2 cut(s)	366, 791
BslI	CCNNNNNNNGG	3 cut(s)	484, 676, 704
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	2 cut(s)	366, 791
BsnI	GGCC	6 cut(s)	243, 298, 413, 434, 464, 647
Bso31I	GGTCTC	1 cut(s)	416
Bsp120I	GGGCCC	1 cut(s)	241
Bsp1286I	GDGCHC	3 cut(s)	161, 245, 623
Bsp13I	TCCGGA	2 cut(s)	207, 635
Bsp143I	GATC	4 cut(s)	338, 550, 638, 795
Bsp19I	CCATGG	1 cut(s)	138
BspANI	GGCC	6 cut(s)	243, 298, 413, 434, 464, 647
BspCNI	CTCAG	6 cut(s)	122, 187, 247, 369, 372, 421
BspEI	TCCGGA	2 cut(s)	207, 635
BspFNI	CGCG	2 cut(s)	503, 782
BspLI	GGNNCC	3 cut(s)	243, 269, 693
BspPI	GGATC	1 cut(s)	646
BspT107I	GGYRCC	1 cut(s)	691
BspTNI	GGTCTC	1 cut(s)	416
BsrDI	GCAATG	2 cut(s)	468, 601
BsrFI	RCCGGY	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	311, 521
BssAI	RCCGGY	1 cut(s)	321
BssECI	CCNNGG	4 cut(s)	138, 245, 414, 698
BssMI	GATC	4 cut(s)	338, 550, 638, 795
BssSI	CACGAG	1 cut(s)	622
BssT1I	CCWWGG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	622
BstBAI	YACGTR	1 cut(s)	820
BstC8I	GCNNGC	3 cut(s)	356, 475, 479
BstDEI	CTNAG	6 cut(s)	109, 195, 255, 359, 377, 408
BstDSI	CCRYGG	2 cut(s)	138, 245
BstF5I	GGATG	2 cut(s)	621, 796
BstFNI	CGCG	2 cut(s)	503, 782
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	4 cut(s)	341, 553, 641, 798
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	4 cut(s)	338, 550, 638, 795
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	7 cut(s)	249, 440, 470, 588, 591, 717, 847
BstSCI	CCNGG	3 cut(s)	264, 484, 697
BstSLI	GKGCMC	1 cut(s)	245
BstUI	CGCG	2 cut(s)	503, 782
BstV2I	GAAGAC	2 cut(s)	168, 192
BstX2I	RGATCY	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	638
BsuRI	GGCC	6 cut(s)	243, 298, 413, 434, 464, 647
BtgI	CCRYGG	2 cut(s)	138, 245
BtgZI	GCGATG	3 cut(s)	161, 740, 797
BtsCI	GGATG	2 cut(s)	621, 796
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	3 cut(s)	356, 475, 479
CfoI	GCGC	1 cut(s)	254
Cfr10I	RCCGGY	1 cut(s)	321
Cfr13I	GGNCC	6 cut(s)	241, 242, 262, 268, 296, 462
CseI	GACGC	2 cut(s)	376, 788
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	1 cut(s)	139
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	6 cut(s)	109, 195, 255, 359, 377, 408
DpnI	GATC	4 cut(s)	340, 552, 640, 797
DpnII	GATC	4 cut(s)	338, 550, 638, 795
EaeI	YGGCCR	2 cut(s)	432, 645
Eco130I	CCWWGG	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	416
Eco47I	GGWCC	2 cut(s)	262, 268
Eco47III	AGCGCT	1 cut(s)	253
EcoO109I	RGGNCCY	2 cut(s)	241, 268
EcoT14I	CCWWGG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	142
FaiI	YATR	5 cut(s)	21, 140, 155, 329, 855
FaqI	GGGAC	2 cut(s)	366, 791
FatI	CATG	1 cut(s)	138
FauI	CCCGC	2 cut(s)	482, 713
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	6 cut(s)	435, 583, 586, 589, 592, 718
FokI	GGATG	2 cut(s)	628, 803
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	6 cut(s)	435, 583, 586, 589, 592, 718
FspBI	CTAG	2 cut(s)	300, 801
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	6 cut(s)	435, 583, 586, 589, 592, 718
GsaI	CCCAGC	2 cut(s)	280, 387
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	6 cut(s)	243, 298, 413, 434, 464, 647
HapII	CCGG	7 cut(s)	180, 208, 265, 322, 485, 636, 698
HgaI	GACGC	2 cut(s)	376, 788
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	3 cut(s)	286, 675, 684
HindII	GTYRAC	3 cut(s)	286, 675, 684
HinfI	GANTC	3 cut(s)	197, 234, 379
HpaII	CCGG	7 cut(s)	180, 208, 265, 322, 485, 636, 698
HphI	GGTGA	1 cut(s)	517
Hpy166II	GTNNAC	3 cut(s)	286, 675, 684
Hpy188I	TCNGA	4 cut(s)	196, 452, 838, 847
Hpy188III	TCNNGA	3 cut(s)	208, 271, 636
Hpy8I	GTNNAC	3 cut(s)	286, 675, 684
Hpy99I	CGWCG	3 cut(s)	287, 529, 769
HpyAV	CCTTC	2 cut(s)	412, 852
HpyCH4IV	ACGT	2 cut(s)	527, 819
HpyCH4V	TGCA	4 cut(s)	4, 95, 354, 369
HpyF10VI	GCNNNNNNNGC	7 cut(s)	249, 440, 470, 588, 591, 717, 847
HpyF3I	CTNAG	6 cut(s)	109, 195, 255, 359, 377, 408
HpySE526I	ACGT	2 cut(s)	527, 819
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	252
Kpn2I	TCCGGA	2 cut(s)	207, 635
Kzo9I	GATC	4 cut(s)	338, 550, 638, 795
LmnI	GCTCC	2 cut(s)	249, 847
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	2 cut(s)	300, 801
MaeII	ACGT	2 cut(s)	527, 819
MalI	GATC	4 cut(s)	340, 552, 640, 797
MboI	GATC	4 cut(s)	338, 550, 638, 795
MboII	GAAGA	2 cut(s)	168, 192
MflI	RGATCY	1 cut(s)	638
MhlI	GDGCHC	3 cut(s)	161, 245, 623
MlsI	TGGCCA	1 cut(s)	647
MluCI	AATT	1 cut(s)	862
MluNI	TGGCCA	1 cut(s)	647
MlyI	GAGTC	2 cut(s)	206, 388
Mox20I	TGGCCA	1 cut(s)	647
MroI	TCCGGA	2 cut(s)	207, 635
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	2 cut(s)	860, 865
Msp20I	TGGCCA	1 cut(s)	647
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	7 cut(s)	180, 208, 265, 322, 485, 636, 698
MspR9I	CCNGG	3 cut(s)	266, 486, 699
MvnI	CGCG	2 cut(s)	503, 782
MwoI	GCNNNNNNNGC	7 cut(s)	249, 440, 470, 588, 591, 717, 847
NciI	CCSGG	3 cut(s)	266, 486, 699
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	4 cut(s)	338, 550, 638, 795
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	3 cut(s)	243, 269, 693
NmeAIII	GCCGAG	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	234
PflFI	GACNNNGTC	1 cut(s)	266
PkrI	GCNGC	6 cut(s)	436, 584, 587, 590, 593, 719
PleI	GAGTC	2 cut(s)	205, 387
PpsI	GAGTC	2 cut(s)	205, 387
Ppu21I	YACGTR	1 cut(s)	820
PpuMI	RGGWCCY	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	268
PspFI	CCCAGC	2 cut(s)	276, 383
PspN4I	GGNNCC	3 cut(s)	243, 269, 693
PspOMI	GGGCCC	1 cut(s)	241
PspPI	GGNCC	6 cut(s)	241, 242, 262, 268, 296, 462
PspPPI	RGGWCCY	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	638
PsyI	GACNNNGTC	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SalI	GTCGAC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	860, 865
SatI	GCNGC	6 cut(s)	435, 583, 586, 589, 592, 718
Sau3AI	GATC	4 cut(s)	338, 550, 638, 795
Sau96I	GGNCC	6 cut(s)	241, 242, 262, 268, 296, 462
SchI	GAGTC	2 cut(s)	206, 388
ScrFI	CCNGG	3 cut(s)	266, 486, 699
SduI	GDGCHC	3 cut(s)	161, 245, 623
SfaNI	GCATC	1 cut(s)	403
SinI	GGWCC	2 cut(s)	262, 268
Sse9I	AATT	1 cut(s)	862
SspMI	CTAG	2 cut(s)	300, 801
StyD4I	CCNGG	3 cut(s)	264, 484, 697
StyI	CCWWGG	1 cut(s)	138
TaiI	ACGT	2 cut(s)	530, 822
TaqI	TCGA	7 cut(s)	115, 285, 337, 397, 490, 524, 656
TasI	AATT	1 cut(s)	862
TauI	GCSGC	6 cut(s)	437, 585, 588, 591, 594, 720
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	2 cut(s)	860, 865
Tru9I	TTAA	2 cut(s)	860, 865
TscAI	CASTG	1 cut(s)	521
TspDTI	ATGAA	2 cut(s)	164, 842
TspGWI	ACGGA	2 cut(s)	575, 692
TspRI	CASTG	1 cut(s)	521
Tth111I	GACNNNGTC	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	262, 268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	655
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	2 cut(s)	300, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.