Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016275

Physical Location & Seq

Genomic Coordinates Forward (+)

37500456 .. 37501664

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G441700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAAGCAATGAACAGGTGCTCGTCTTCCACTTCGTCTTCCGACACTTCCTCTTCAGAGTCTTCTCTTCCCAGAAATCCTAACAAGCCGGAACGCATCAAGGGTCCGTGGAGCGCGGAAGAGGACCGGGTCTTGACCCGGCTCGTCGAGCGCTACGGACCCAGAAACTGGTCCTTGATAAGCCGGTACATAAAGGGTCGGTCGGGTAAGTCTTGCAGGCTCAGATGGTGCAATCAGCTGAGCCCGAACGTCGAGCACCGACCCTTTTCGCAGGCTGAGGACGAGACCATTTTAGCTGCCCATGCCCGATTCGGGAACCGGTGGGCCACCATTGCCCGGTTGCTCCCGGGTCGAACTGACAACGCCGTGAAAAACCACTGGAACTCGACGTTGAAGAGAAGGGTAAGAGGAGAGCATCACCATCATCACCAAATAGACGGCGTTAATTTTGTTGGCGGTGGCGGCAATGTAGCTAATAATGAAGGGATGAGCACGAGTTCGGTTTCTGGATCTTTGGTTAATGGGTCGGTGGAGTTTGACCCGTTGACCGAGTTGACTTTGGCTCCCCCGGGGATTAGCGGGGCCGCTATGGTGTCGGTGCAGCAAAGGAGTGAGAGTTTGCCGTCGGGGTTTTGGGATACCATGAGGGATGTTATAGCTAGGGAGGTTCGAGATTACGTGGCAACAACATTTTCTGAGCCTTCGGGGCTTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

239

Amino Acids

26.36

Weight (kDa)

9.4

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35010
malus_domestica	MD08G1107400.v1.1 MD15G1088000.v1.1
prunus_persica	Prupe.1G441700_v2.0.a1
pyrus_communis	pycom08g08930 pycom15g08260
rosa_chinensis	RchiOBHm_Chr6g0307001
rosa_laevigata	RLG00000010748
rosa_roxburghii	Rroxscaffold_7G00161290
rosa_rugosa	Rorug06G0354900
rosa_samantha	Rh6AG466700 Rh6BG434300 Rh6CG481700 Rh6DG468000
rosa_wichuraiana	Rw6G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	168
AccII	CGCG	1 cut(s)	116
AciI	CCGC	5 cut(s)	116, 456, 462, 579, 585
AclWI	GGATC	1 cut(s)	517
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	1 cut(s)	188
AfeI	AGCGCT	1 cut(s)	152
AfiI	CCNNNNNNNGG	3 cut(s)	168, 312, 336
AgeI	ACCGGT	1 cut(s)	318
AgsI	TTSAA	1 cut(s)	394
AluBI	AGCT	4 cut(s)	238, 296, 473, 659
AluI	AGCT	4 cut(s)	238, 296, 473, 659
Alw21I	GWGCWC	3 cut(s)	23, 258, 494
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	517
AlwNI	CAGNNNCTG	1 cut(s)	168
Ama87I	CYCGRG	2 cut(s)	346, 568
Aor51HI	AGCGCT	1 cut(s)	152
AoxI	GGCC	2 cut(s)	324, 582
ApeKI	GCWGC	2 cut(s)	296, 601
AsiGI	ACCGGT	1 cut(s)	318
AspLEI	GCGC	2 cut(s)	116, 153
AspS9I	GGNCC	6 cut(s)	104, 124, 158, 171, 324, 582
AsuC2I	CCSGG	7 cut(s)	128, 139, 337, 347, 348, 569, 570
AsuHPI	GGTGA	2 cut(s)	410, 419
AvaI	CYCGRG	2 cut(s)	346, 568
AvaII	GGWCC	4 cut(s)	104, 124, 158, 171
BanII	GRGCYC	1 cut(s)	245
BauI	CACGAG	1 cut(s)	493
BbsI	GAAGAC	3 cut(s)	18, 30, 54
Bbv12I	GWGCWC	3 cut(s)	23, 258, 494
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	283, 613
BccI	CCATC	2 cut(s)	219, 429
BceAI	ACGGC	3 cut(s)	350, 454, 607
BciVI	GTATCC	1 cut(s)	631
BcnI	CCSGG	7 cut(s)	128, 139, 337, 347, 348, 569, 570
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	660
BfoI	RGCGCY	1 cut(s)	154
BfuI	GTATCC	1 cut(s)	631
BglI	GCCNNNNNGGC	1 cut(s)	706
BisI	GCNGC	4 cut(s)	297, 463, 585, 602
BlpI	GCTNAGC	1 cut(s)	239
BlsI	GCNGC	4 cut(s)	298, 464, 586, 603
Bme1390I	CCNGG	7 cut(s)	128, 139, 337, 347, 348, 569, 570
Bme18I	GGWCC	4 cut(s)	104, 124, 158, 171
BmeT110I	CYCGRG	2 cut(s)	346, 568
BmgT120I	GGNCC	6 cut(s)	104, 124, 158, 171, 324, 582
BmiI	GGNNCC	5 cut(s)	105, 160, 317, 564, 583
BmrFI	CCNGG	7 cut(s)	128, 139, 337, 347, 348, 569, 570
BmsI	GCATC	2 cut(s)	105, 424
BpiI	GAAGAC	3 cut(s)	18, 30, 54
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu1102I	GCTNAGC	1 cut(s)	239
BpuMI	CCSGG	7 cut(s)	128, 139, 337, 347, 348, 569, 570
BsaAI	YACGTR	1 cut(s)	679
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	5 cut(s)	107, 346, 567, 568, 569
BsaWI	WCCGGW	1 cut(s)	318
BsaXI	ACNNNNNCTCC	4 cut(s)	547, 577, 601, 631
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 312, 336
Bse118I	RCCGGY	2 cut(s)	183, 318
Bse1I	ACTGG	2 cut(s)	173, 383
Bse3DI	GCAATG	3 cut(s)	15, 330, 472
BseDI	CCNNGG	5 cut(s)	107, 346, 567, 568, 569
BseGI	GGATG	2 cut(s)	492, 655
BseLI	CCNNNNNNNGG	3 cut(s)	168, 312, 336
BseMI	GCAATG	3 cut(s)	15, 330, 472
BseMII	CTCAG	4 cut(s)	230, 235, 267, 687
BseNI	ACTGG	2 cut(s)	173, 383
BseRI	GAGGAG	1 cut(s)	423
BseXI	GCAGC	2 cut(s)	283, 613
BsgI	GTGCAG	1 cut(s)	620
Bsh1236I	CGCG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	203
BshFI	GGCC	2 cut(s)	326, 584
BshTI	ACCGGT	1 cut(s)	318
BsiEI	CGRYCG	1 cut(s)	203
BsiHKAI	GWGCWC	3 cut(s)	23, 258, 494
BsiHKCI	CYCGRG	2 cut(s)	346, 568
BsiSI	CCGG	8 cut(s)	89, 127, 139, 184, 319, 337, 347, 569
BslI	CCNNNNNNNGG	3 cut(s)	168, 312, 336
BsmAI	GTCTC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	326, 584
Bso31I	GGTCTC	1 cut(s)	278
BsoBI	CYCGRG	2 cut(s)	346, 568
Bsp1286I	GDGCHC	4 cut(s)	23, 245, 258, 494
Bsp143I	GATC	1 cut(s)	509
Bsp1720I	GCTNAGC	1 cut(s)	239
BspACI	CCGC	5 cut(s)	116, 456, 462, 579, 585
BspANI	GGCC	2 cut(s)	326, 584
BspCNI	CTCAG	4 cut(s)	231, 234, 268, 688
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	5 cut(s)	105, 160, 317, 564, 583
BspPI	GGATC	1 cut(s)	517
BspTNI	GGTCTC	1 cut(s)	278
BsrDI	GCAATG	3 cut(s)	15, 330, 472
BsrFI	RCCGGY	2 cut(s)	183, 318
BsrI	ACTGG	2 cut(s)	173, 383
BssAI	RCCGGY	2 cut(s)	183, 318
BssECI	CCNNGG	5 cut(s)	107, 346, 567, 568, 569
BssMI	GATC	1 cut(s)	509
BssSI	CACGAG	1 cut(s)	493
Bst2BI	CACGAG	1 cut(s)	493
Bst6I	CTCTTC	4 cut(s)	58, 72, 114, 389
BstBAI	YACGTR	1 cut(s)	679
BstC8I	GCNNGC	2 cut(s)	218, 273
BstDEI	CTNAG	4 cut(s)	221, 239, 276, 696
BstDSI	CCRYGG	1 cut(s)	107
BstF5I	GGATG	2 cut(s)	492, 655
BstFNI	CGCG	1 cut(s)	116
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	2 cut(s)	116, 153
BstKTI	GATC	1 cut(s)	512
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	509
BstMCI	CGRYCG	1 cut(s)	203
BstMWI	GCNNNNNNNGC	5 cut(s)	148, 302, 332, 462, 706
BstSCI	CCNGG	7 cut(s)	126, 137, 335, 345, 346, 567, 568
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	283, 613
BstV2I	GAAGAC	3 cut(s)	18, 30, 54
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	2 cut(s)	326, 584
BtgI	CCRYGG	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	492, 655
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	2 cut(s)	218, 273
CaiI	CAGNNNCTG	1 cut(s)	168
CfoI	GCGC	2 cut(s)	116, 153
Cfr10I	RCCGGY	2 cut(s)	183, 318
Cfr13I	GGNCC	6 cut(s)	104, 124, 158, 171, 324, 582
Cfr9I	CCCGGG	2 cut(s)	346, 568
Csp6I	GTAC	1 cut(s)	187
CspAI	ACCGGT	1 cut(s)	318
CviAII	CATG	2 cut(s)	302, 643
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	4 cut(s)	221, 239, 276, 696
DpnI	GATC	1 cut(s)	511
DpnII	GATC	1 cut(s)	509
Eam1104I	CTCTTC	4 cut(s)	58, 72, 114, 389
EarI	CTCTTC	4 cut(s)	58, 72, 114, 389
Eco24I	GRGCYC	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	4 cut(s)	104, 124, 158, 171
Eco47III	AGCGCT	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	39
Eco88I	CYCGRG	2 cut(s)	346, 568
EcoT38I	GRGCYC	1 cut(s)	245
FaeI	CATG	2 cut(s)	305, 646
FaiI	YATR	5 cut(s)	191, 303, 590, 644, 656
FatI	CATG	2 cut(s)	301, 642
FauI	CCCGC	1 cut(s)	572
Fnu4HI	GCNGC	4 cut(s)	297, 463, 585, 602
FokI	GGATG	2 cut(s)	499, 662
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	4 cut(s)	297, 463, 585, 602
FspBI	CTAG	1 cut(s)	660
GlaI	GCGC	2 cut(s)	115, 152
GluI	GCNGC	4 cut(s)	297, 463, 585, 602
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	2 cut(s)	326, 584
HapII	CCGG	8 cut(s)	89, 127, 139, 184, 319, 337, 347, 569
HhaI	GCGC	2 cut(s)	116, 153
Hin1II	CATG	2 cut(s)	305, 646
Hin6I	GCGC	2 cut(s)	114, 151
HinP1I	GCGC	2 cut(s)	114, 151
HincII	GTYRAC	2 cut(s)	546, 555
HindII	GTYRAC	2 cut(s)	546, 555
HinfI	GANTC	2 cut(s)	59, 309
HpaII	CCGG	8 cut(s)	89, 127, 139, 184, 319, 337, 347, 569
HphI	GGTGA	2 cut(s)	410, 419
Hpy166II	GTNNAC	2 cut(s)	546, 555
Hpy188I	TCNGA	4 cut(s)	43, 58, 224, 697
Hpy188III	TCNNGA	4 cut(s)	133, 313, 507, 671
Hpy8I	GTNNAC	2 cut(s)	546, 555
Hpy99I	CGWCG	4 cut(s)	149, 254, 391, 628
HpyAV	CCTTC	3 cut(s)	393, 476, 711
HpyCH4IV	ACGT	3 cut(s)	249, 389, 678
HpyCH4V	TGCA	3 cut(s)	216, 231, 601
HpyF10VI	GCNNNNNNNGC	5 cut(s)	148, 302, 332, 462, 706
HpyF3I	CTNAG	4 cut(s)	221, 239, 276, 696
HpySE526I	ACGT	3 cut(s)	249, 389, 678
Hsp92II	CATG	2 cut(s)	305, 646
HspAI	GCGC	2 cut(s)	114, 151
Kzo9I	GATC	1 cut(s)	509
LmnI	GCTCC	3 cut(s)	111, 348, 568
Lsp1109I	GCAGC	2 cut(s)	283, 613
LweI	GCATC	2 cut(s)	105, 424
MaeI	CTAG	1 cut(s)	660
MaeII	ACGT	3 cut(s)	249, 389, 678
MalI	GATC	1 cut(s)	511
MboI	GATC	1 cut(s)	509
MboII	GAAGA	7 cut(s)	18, 30, 45, 54, 59, 131, 406
MflI	RGATCY	1 cut(s)	509
MhlI	GDGCHC	4 cut(s)	23, 245, 258, 494
MluCI	AATT	1 cut(s)	445
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	6 cut(s)	61, 115, 271, 401, 639, 658
MseI	TTAA	2 cut(s)	444, 519
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	8 cut(s)	89, 127, 139, 184, 319, 337, 347, 569
MspR9I	CCNGG	7 cut(s)	128, 139, 337, 347, 348, 569, 570
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	5 cut(s)	148, 302, 332, 462, 706
NciI	CCSGG	7 cut(s)	128, 139, 337, 347, 348, 569, 570
NdeII	GATC	1 cut(s)	509
NlaIII	CATG	2 cut(s)	305, 646
NlaIV	GGNNCC	5 cut(s)	105, 160, 317, 564, 583
PfeI	GAWTC	1 cut(s)	309
PflFI	GACNNNGTC	1 cut(s)	128
PflMI	CCANNNNNTGG	1 cut(s)	168
PinAI	ACCGGT	1 cut(s)	318
PkrI	GCNGC	4 cut(s)	298, 464, 586, 603
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Ppu21I	YACGTR	1 cut(s)	679
PspN4I	GGNNCC	5 cut(s)	105, 160, 317, 564, 583
PspPI	GGNCC	6 cut(s)	104, 124, 158, 171, 324, 582
PstNI	CAGNNNCTG	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	509
PsyI	GACNNNGTC	1 cut(s)	128
PvuII	CAGCTG	1 cut(s)	238
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SaqAI	TTAA	2 cut(s)	444, 519
SatI	GCNGC	4 cut(s)	297, 463, 585, 602
Sau3AI	GATC	1 cut(s)	509
Sau96I	GGNCC	6 cut(s)	104, 124, 158, 171, 324, 582
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	7 cut(s)	128, 139, 337, 347, 348, 569, 570
SduI	GDGCHC	4 cut(s)	23, 245, 258, 494
SetI	ASST	9 cut(s)	20, 240, 252, 298, 392, 475, 661, 669, 681
SfaNI	GCATC	2 cut(s)	105, 424
SinI	GGWCC	4 cut(s)	104, 124, 158, 171
SmaI	CCCGGG	2 cut(s)	348, 570
Sse9I	AATT	1 cut(s)	445
SsiI	CCGC	5 cut(s)	116, 456, 462, 579, 585
SspMI	CTAG	1 cut(s)	660
StyD4I	CCNGG	7 cut(s)	126, 137, 335, 345, 346, 567, 568
TaiI	ACGT	3 cut(s)	252, 392, 681
TaqI	TCGA	5 cut(s)	147, 252, 352, 386, 670
TaqII	GACCGA	2 cut(s)	189, 563
TasI	AATT	1 cut(s)	445
TauI	GCSGC	2 cut(s)	465, 587
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	2 cut(s)	444, 519
Tru9I	TTAA	2 cut(s)	444, 519
TscAI	CASTG	1 cut(s)	383
TseI	GCWGC	2 cut(s)	296, 601
TspDTI	ATGAA	2 cut(s)	26, 495
TspGWI	ACGGA	2 cut(s)	96, 171
TspMI	CCCGGG	2 cut(s)	346, 568
TspRI	CASTG	1 cut(s)	383
Tth111I	GACNNNGTC	1 cut(s)	128
Van91I	CCANNNNNTGG	1 cut(s)	168
VpaK11BI	GGWCC	4 cut(s)	104, 124, 158, 171
XmaI	CCCGGG	2 cut(s)	346, 568
XspI	CTAG	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.