RLG00000010748
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
4074743 .. 4075504
762 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010748

Sequence Viewer

Length: 762 bp
ATGGATGCAAATATTGCCAATATGTGCTCTTCTTCTACTTCTACCTCCGACTCTTCTTCCTCAGAGTCCTCGCAGCCCAGAAATCCCAACAAGGCCGAGAGAATCAAGGGCCCGTGGAGCGCCGAGGAGGATCGGGTTCTCACCCGCCTCGTCGAGCGCTACGGCCCCAGAAATTGGTCTTTGATTAGCCGCTACATTAAGGGTCGCTCGGGCAAGTCCTGCAGGCTTAGGTGGTGCAACCAGCTCAGCCCCAGCGTCCAGCACCGTCCCTTTTCCCAAGCCGAAGACGAAACCATCCTCGCCGCGCACTCCCGCTACGGCAACCGGTGGGCCACCATTGCCCGGTTGCTCCCGGGCCGGACCGACAATGCGGTCAAGAACCACTGGAACTCGACCCTGAAGAGAAGGGTAAGAGAACCACAAGACCACCAAGAATTGGATCATCAGGGCGAGGGTAATATTGGCAATGCAGCGATTGAGGTGATGATGATGGGTAATACTACTACCACTACTACTAGTGCTTCAGCTGCCTCCGGGCGTAATGGGTCCATGGATCTGGATGACCCGTTGACCGAGTTGACTCTGGCCACGCCGGGGATTGGTGGCTCTGTGGTGTCGTCGTCGGAACAACACCACCATCACCGGAGCAGCAGCGAGAGTTTTCCTCCGGCGGGGTTTTGGGATGTGATGAGGGGTGTGATTGCCAGGGAAGTTAGGGATTACGTGAGCTCGTCATTTTCAGAAACTTCTGGGCTTCATTGA

Protein Analysis

254

Amino Acids

27.92

Weight (kDa)

7.85

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 36 - 82 6.2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 39 - 98 8.7e-18 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 89 - 132 1.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 91 - 145 2.8e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016275)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 371
AccB7I CCANNNNNTGG 2 cut(s) 174, 436
AccII CGCG 1 cut(s) 305
AciI CCGC 6 cut(s) 145, 190, 303, 313, 371, 671
AclWI GGATC 3 cut(s) 138, 447, 561
AcoI YGGCCR 1 cut(s) 585
AcuI CTGAAG 2 cut(s) 419, 507
AfeI AGCGCT 1 cut(s) 158
AfiI CCNNNNNNNGG 6 cut(s) 174, 342, 436, 594, 599, 671
AgeI ACCGGT 1 cut(s) 324
AhlI ACTAGT 1 cut(s) 515
AjnI CCWGG 1 cut(s) 704
AluBI AGCT 3 cut(s) 244, 527, 729
AluI AGCT 3 cut(s) 244, 527, 729
Alw21I GWGCWC 2 cut(s) 29, 731
AlwI GGATC 3 cut(s) 138, 447, 561
Ama87I CYCGRG 2 cut(s) 208, 352
Aor51HI AGCGCT 1 cut(s) 158
AoxI GGCC 6 cut(s) 93, 109, 163, 330, 355, 585
ApaI GGGCCC 1 cut(s) 113
ApeKI GCWGC 5 cut(s) 73, 470, 527, 648, 651
AsiGI ACCGGT 1 cut(s) 324
AspLEI GCGC 3 cut(s) 122, 159, 307
AspS9I GGNCC 7 cut(s) 109, 110, 164, 330, 355, 360, 546
AsuC2I CCSGG 5 cut(s) 343, 353, 354, 535, 594
AsuHPI GGTGA 3 cut(s) 133, 493, 632
AvaI CYCGRG 2 cut(s) 208, 352
AvaII GGWCC 2 cut(s) 360, 546
BaeGI GKGCMC 1 cut(s) 113
BalI TGGCCA 1 cut(s) 587
BanII GRGCYC 2 cut(s) 113, 731
BbsI GAAGAC 1 cut(s) 291
Bbv12I GWGCWC 2 cut(s) 29, 731
BbvI GCAGC 5 cut(s) 85, 482, 514, 660, 663
BccI CCATC 3 cut(s) 302, 484, 645
BceAI ACGGC 2 cut(s) 178, 334
BciT130I CCWGG 1 cut(s) 706
BcnI CCSGG 5 cut(s) 343, 353, 354, 535, 594
BcuI ACTAGT 1 cut(s) 515
BfaI CTAG 1 cut(s) 516
BfmI CTRYAG 1 cut(s) 220
BfoI RGCGCY 2 cut(s) 123, 160
BisI GCNGC 7 cut(s) 74, 190, 303, 471, 528, 649, 652
BlpI GCTNAGC 1 cut(s) 245
BlsI GCNGC 7 cut(s) 75, 191, 304, 472, 529, 650, 653
Bme1390I CCNGG 6 cut(s) 343, 353, 354, 535, 594, 706
Bme18I GGWCC 2 cut(s) 360, 546
BmeT110I CYCGRG 2 cut(s) 208, 352
BmgT120I GGNCC 7 cut(s) 109, 110, 164, 330, 355, 360, 546
BmiI GGNNCC 3 cut(s) 111, 166, 547
BmrFI CCNGG 6 cut(s) 343, 353, 354, 535, 594, 706
BpiI GAAGAC 1 cut(s) 291
BplI GAGNNNNNCTC 2 cut(s) 649, 681
Bpu10I CCTNAGC 1 cut(s) 227
Bpu1102I GCTNAGC 1 cut(s) 245
BpuMI CCSGG 5 cut(s) 343, 353, 354, 535, 594
BsaAI YACGTR 1 cut(s) 724
BsaJI CCNNGG 6 cut(s) 113, 123, 352, 549, 593, 705
BsaWI WCCGGW 2 cut(s) 324, 642
Bsc4I CCNNNNNNNGG 6 cut(s) 174, 342, 436, 594, 599, 671
Bse118I RCCGGY 1 cut(s) 324
Bse1I ACTGG 1 cut(s) 389
Bse3DI GCAATG 2 cut(s) 336, 472
BseBI CCWGG 1 cut(s) 706
BseDI CCNNGG 6 cut(s) 113, 123, 352, 549, 593, 705
BseGI GGATG 4 cut(s) 10, 294, 565, 688
BseLI CCNNNNNNNGG 6 cut(s) 174, 342, 436, 594, 599, 671
BseMI GCAATG 2 cut(s) 336, 472
BseMII CTCAG 2 cut(s) 75, 259
BseNI ACTGG 1 cut(s) 389
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 113
BseXI GCAGC 5 cut(s) 85, 482, 514, 660, 663
BseYI CCCAGC 1 cut(s) 251
Bsh1236I CGCG 1 cut(s) 305
BshFI GGCC 6 cut(s) 95, 111, 165, 332, 357, 587
BshTI ACCGGT 1 cut(s) 324
BsiHKAI GWGCWC 2 cut(s) 29, 731
BsiHKCI CYCGRG 2 cut(s) 208, 352
BsiSI CCGG 8 cut(s) 325, 343, 353, 358, 534, 593, 643, 668
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 6 cut(s) 174, 342, 436, 594, 599, 671
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 6 cut(s) 95, 111, 165, 332, 357, 587
BsoBI CYCGRG 2 cut(s) 208, 352
Bsp120I GGGCCC 1 cut(s) 109
Bsp1286I GDGCHC 3 cut(s) 29, 113, 731
Bsp143I GATC 3 cut(s) 130, 439, 553
Bsp1720I GCTNAGC 1 cut(s) 245
Bsp19I CCATGG 1 cut(s) 549
BspACI CCGC 6 cut(s) 145, 190, 303, 313, 371, 671
BspANI GGCC 6 cut(s) 95, 111, 165, 332, 357, 587
BspCNI CTCAG 2 cut(s) 74, 258
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 3 cut(s) 111, 166, 547
BspMAI CTGCAG 1 cut(s) 224
BspPI GGATC 3 cut(s) 138, 447, 561
BspQI GCTCTTC 1 cut(s) 34
BsrDI GCAATG 2 cut(s) 336, 472
BsrFI RCCGGY 1 cut(s) 324
BsrI ACTGG 1 cut(s) 389
BssAI RCCGGY 1 cut(s) 324
BssECI CCNNGG 6 cut(s) 113, 123, 352, 549, 593, 705
BssMI GATC 3 cut(s) 130, 439, 553
BssT1I CCWWGG 1 cut(s) 549
Bst2UI CCWGG 1 cut(s) 706
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 3 cut(s) 34, 58, 395
BstAPI GCANNNNNTGC 2 cut(s) 14, 219
BstBAI YACGTR 1 cut(s) 724
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 3 cut(s) 61, 227, 245
BstDSI CCRYGG 2 cut(s) 113, 549
BstF5I GGATG 4 cut(s) 10, 294, 565, 688
BstFNI CGCG 1 cut(s) 305
BstH2I RGCGCY 2 cut(s) 123, 160
BstHHI GCGC 3 cut(s) 122, 159, 307
BstKTI GATC 3 cut(s) 133, 442, 556
BstMBI GATC 3 cut(s) 130, 439, 553
BstMWI GCNNNNNNNGC 5 cut(s) 14, 117, 219, 338, 527
BstNI CCWGG 1 cut(s) 706
BstSCI CCNGG 6 cut(s) 341, 351, 352, 533, 592, 704
BstSFI CTRYAG 1 cut(s) 220
BstSLI GKGCMC 1 cut(s) 113
BstUI CGCG 1 cut(s) 305
BstV1I GCAGC 5 cut(s) 85, 482, 514, 660, 663
BstV2I GAAGAC 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 553
BstXI CCANNNNNNTGG 1 cut(s) 556
BstYI RGATCY 1 cut(s) 553
BsuRI GGCC 6 cut(s) 95, 111, 165, 332, 357, 587
BtgI CCRYGG 2 cut(s) 113, 549
BtsCI GGATG 4 cut(s) 10, 294, 565, 688
BtsIMutI CAGTG 1 cut(s) 382
Cac8I GCNNGC 1 cut(s) 224
CfoI GCGC 3 cut(s) 122, 159, 307
Cfr10I RCCGGY 1 cut(s) 324
Cfr13I GGNCC 7 cut(s) 109, 110, 164, 330, 355, 360, 546
Cfr9I CCCGGG 1 cut(s) 352
CpoI CGGWCCG 1 cut(s) 360
CseI GACGC 1 cut(s) 244
CspAI ACCGGT 1 cut(s) 324
CspI CGGWCCG 1 cut(s) 360
CviAII CATG 1 cut(s) 550
DdeI CTNAG 3 cut(s) 61, 227, 245
DpnI GATC 3 cut(s) 132, 441, 555
DpnII GATC 3 cut(s) 130, 439, 553
DrdI GACNNNNNNGTC 1 cut(s) 371
DseDI GACNNNNNNGTC 1 cut(s) 371
EaeI YGGCCR 1 cut(s) 585
Eam1104I CTCTTC 3 cut(s) 34, 58, 395
EarI CTCTTC 3 cut(s) 34, 58, 395
Ecl136II GAGCTC 1 cut(s) 729
Eco130I CCWWGG 1 cut(s) 549
Eco24I GRGCYC 2 cut(s) 113, 731
Eco47I GGWCC 2 cut(s) 360, 546
Eco47III AGCGCT 1 cut(s) 158
Eco53kI GAGCTC 1 cut(s) 729
Eco57I CTGAAG 2 cut(s) 419, 507
Eco88I CYCGRG 2 cut(s) 208, 352
EcoICRI GAGCTC 1 cut(s) 729
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 704
EcoT14I CCWWGG 1 cut(s) 549
EcoT38I GRGCYC 2 cut(s) 113, 731
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 1 cut(s) 553
FaiI YATR 2 cut(s) 23, 551
FaqI GGGAC 1 cut(s) 252
FatI CATG 1 cut(s) 549
FauI CCCGC 3 cut(s) 152, 320, 664
Fnu4HI GCNGC 7 cut(s) 74, 190, 303, 471, 528, 649, 652
FokI GGATG 4 cut(s) 17, 281, 572, 695
FriOI GRGCYC 2 cut(s) 113, 731
Fsp4HI GCNGC 7 cut(s) 74, 190, 303, 471, 528, 649, 652
FspBI CTAG 1 cut(s) 516
GlaI GCGC 3 cut(s) 121, 158, 306
GluI GCNGC 7 cut(s) 74, 190, 303, 471, 528, 649, 652
GsaI CCCAGC 1 cut(s) 255
HaeII RGCGCY 2 cut(s) 123, 160
HaeIII GGCC 6 cut(s) 95, 111, 165, 332, 357, 587
HapII CCGG 8 cut(s) 325, 343, 353, 358, 534, 593, 643, 668
HgaI GACGC 1 cut(s) 244
HhaI GCGC 3 cut(s) 122, 159, 307
Hin1II CATG 1 cut(s) 553
Hin6I GCGC 3 cut(s) 120, 157, 305
HinP1I GCGC 3 cut(s) 120, 157, 305
HincII GTYRAC 2 cut(s) 570, 579
HindII GTYRAC 2 cut(s) 570, 579
HinfI GANTC 4 cut(s) 50, 65, 102, 580
HpaII CCGG 8 cut(s) 325, 343, 353, 358, 534, 593, 643, 668
HphI GGTGA 3 cut(s) 133, 493, 632
Hpy166II GTNNAC 2 cut(s) 570, 579
Hpy188I TCNGA 4 cut(s) 49, 64, 625, 742
Hpy188III TCNNGA 2 cut(s) 376, 557
Hpy8I GTNNAC 2 cut(s) 570, 579
Hpy99I CGWCG 3 cut(s) 155, 622, 625
HpyAV CCTTC 1 cut(s) 399
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 723
HpyCH4V TGCA 4 cut(s) 8, 222, 237, 470
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 117, 219, 338, 527
HpyF3I CTNAG 3 cut(s) 61, 227, 245
HpySE526I ACGT 1 cut(s) 723
Hsp92II CATG 1 cut(s) 553
HspAI GCGC 3 cut(s) 120, 157, 305
Kzo9I GATC 3 cut(s) 130, 439, 553
LguI GCTCTTC 1 cut(s) 34
LmnI GCTCC 3 cut(s) 117, 354, 645
Lsp1109I GCAGC 5 cut(s) 85, 482, 514, 660, 663
MaeI CTAG 1 cut(s) 516
MaeII ACGT 1 cut(s) 723
MalI GATC 3 cut(s) 132, 441, 555
MboI GATC 3 cut(s) 130, 439, 553
MboII GAAGA 6 cut(s) 21, 24, 45, 48, 296, 412
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 3 cut(s) 29, 113, 731
MlsI TGGCCA 1 cut(s) 587
MluCI AATT 2 cut(s) 172, 434
MluNI TGGCCA 1 cut(s) 587
MlyI GAGTC 3 cut(s) 44, 74, 574
MmeI TCCRAC 2 cut(s) 72, 603
Mox20I TGGCCA 1 cut(s) 587
MscI TGGCCA 1 cut(s) 587
MseI TTAA 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 587
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 8 cut(s) 325, 343, 353, 358, 534, 593, 643, 668
MspR9I CCNGG 6 cut(s) 343, 353, 354, 535, 594, 706
MvaI CCWGG 1 cut(s) 706
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 5 cut(s) 14, 117, 219, 338, 527
NciI CCSGG 5 cut(s) 343, 353, 354, 535, 594
NcoI CCATGG 1 cut(s) 549
NdeII GATC 3 cut(s) 130, 439, 553
NlaIII CATG 1 cut(s) 553
NlaIV GGNNCC 3 cut(s) 111, 166, 547
NmeAIII GCCGAG 2 cut(s) 121, 148
PciSI GCTCTTC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 102
PflMI CCANNNNNTGG 2 cut(s) 174, 436
PinAI ACCGGT 1 cut(s) 324
PkrI GCNGC 7 cut(s) 75, 191, 304, 472, 529, 650, 653
PleI GAGTC 3 cut(s) 44, 73, 574
PpsI GAGTC 3 cut(s) 44, 73, 574
Ppu21I YACGTR 1 cut(s) 724
Psp124BI GAGCTC 1 cut(s) 731
Psp6I CCWGG 1 cut(s) 704
PspFI CCCAGC 1 cut(s) 251
PspGI CCWGG 1 cut(s) 704
PspN4I GGNNCC 3 cut(s) 111, 166, 547
PspOMI GGGCCC 1 cut(s) 109
PspPI GGNCC 7 cut(s) 109, 110, 164, 330, 355, 360, 546
PstI CTGCAG 1 cut(s) 224
PsuI RGATCY 1 cut(s) 553
PvuII CAGCTG 1 cut(s) 527
Rsr2I CGGWCCG 1 cut(s) 360
RsrII CGGWCCG 1 cut(s) 360
SacI GAGCTC 1 cut(s) 731
SapI GCTCTTC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 7 cut(s) 74, 190, 303, 471, 528, 649, 652
Sau3AI GATC 3 cut(s) 130, 439, 553
Sau96I GGNCC 7 cut(s) 109, 110, 164, 330, 355, 360, 546
SbfI CCTGCAGG 1 cut(s) 224
SchI GAGTC 3 cut(s) 44, 74, 574
ScrFI CCNGG 6 cut(s) 343, 353, 354, 535, 594, 706
SdaI CCTGCAGG 1 cut(s) 224
SduI GDGCHC 3 cut(s) 29, 113, 731
SetI ASST 7 cut(s) 47, 233, 246, 483, 529, 726, 731
SfcI CTRYAG 1 cut(s) 220
SinI GGWCC 2 cut(s) 360, 546
SmaI CCCGGG 1 cut(s) 354
SpeI ACTAGT 1 cut(s) 515
Sse8387I CCTGCAGG 1 cut(s) 224
Sse9I AATT 2 cut(s) 172, 434
SsiI CCGC 6 cut(s) 145, 190, 303, 313, 371, 671
SspI AATATT 2 cut(s) 13, 460
SspMI CTAG 1 cut(s) 516
SstI GAGCTC 1 cut(s) 731
StyD4I CCNGG 6 cut(s) 341, 351, 352, 533, 592, 704
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 1 cut(s) 726
TaqI TCGA 2 cut(s) 153, 392
TaqII GACCGA 2 cut(s) 377, 587
TasI AATT 2 cut(s) 172, 434
TauI GCSGC 2 cut(s) 192, 305
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 1 cut(s) 389
TseI GCWGC 5 cut(s) 73, 470, 527, 648, 651
TspDTI ATGAA 1 cut(s) 746
TspMI CCCGGG 1 cut(s) 352
TspRI CASTG 1 cut(s) 389
Van91I CCANNNNNTGG 2 cut(s) 174, 436
VpaK11BI GGWCC 2 cut(s) 360, 546
XmaI CCCGGG 1 cut(s) 352
XspI CTAG 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.