FvH4_2g35520

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015152
Physical Location & Seq
Forward (+)
26155494 .. 26161295
5802 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35520.t1

Sequence Viewer

Length: 2139 bp
ATGCCCGGCGTCGCATCAAACTCCGGCGACCTATCCCTGGTCTCCTACTCGCCGGAGCTCCCGCAGCCCGTCGTACACTCTATTCACCATGGCCTCAAGCCTCCGATCGCTCGCCTCTCCATCTCGTGGTCCCGCGGCAATACTCTGCGCGTGTCGGTTCTCCGTCCGCCGTCCGATGAAGACAGCGAGGCCAGCGGGAGAGTAGTGGAGGTCAAGCTCAGTAATGGAGACGGAGAGAATAGCGACGCCAAGTGGCGGAAGATCGCATACGGCTCCGTCACGCCGTTCGCTCATCTCCAGAGCCGCCGGAGCACCATCTCCAACTTATCGAACATGTCTCTCAGTCCATCGCCGTATAGCATCGATTGGTGGGAGTATGTGATGGAGTACAGCAAGGACATAAATTCACTCCTCGGTAGCCTCGATTCAGGTCCTGATCCGGTGATTGACGATCCGAAGATGGTTTTAAAGAGAGTCGAGGAGCCTACCTCTATAAAAGCAGCTTGGGAGCTGATGGAGATATTTTATGCAGACAAGCAGTCTCAGCCATGGCAATTGGAACGGCTTGTTGATTGGTTGGCTGATTATGATAGCTTGCTCTCGAGTACTCACCCAACAGTCCATTCAAAACTTGTGAATTTCCAAAATGAACTTTCCAGCTTACAGGTTATTGAGGACGATCCTAACTATTGGGATGTGTTATCATCAGCACTGGCAGTTGGCTGGATTGATTTAGTGGTGAAACTGTTGCGCTTGCATGGATCTTATCAACTCGATCAGCTTGGAAACCGTGAGACAGAAAATGGACTTGTAGAGGCAGTTGCTGTTCTTATTTCACAGAAGCCACGTATGCGTCCAGGAGTAGAAGATGGAAAGTTGGGTGAATGCTTTAAAGCAAAGCCTGATTTTATCAAGGCATGGGAGAAGTGGAGAGCACAAATTACGAAGCTAGACTGCAGTGGATTCTGGCTTCAGTGTGATCACCATCAAACCCGGGAGGGATTGAAGAATATGATACAGGTTATGCTTGGAAACATTGACAATCTCTGCAATCAAACTTGCCACTGGATAGAGCTGTTCATCTCTCACTTTCTATATGTCAGGCCATTAACAGTGGGTCTCGAAAGCATGTATAGCCTAGCCCAGAAATGCTTACAATTGAAACCAATGTCAGGTGCCCATAGGTTGATAGATATTATTCTTGGAATCCTTGGGGAAAATACCGAGGTTGTCTTGGCGGAATGCTCTAGAGCATTTGGGCCATGGATGGTTGCCCATGCCATTGAGTTGTTGACCACTGGGAGTGATCACGCAGAAAGTCTTCTACATGAAGAACGCTATAACTTGGGGGGAATTAGTATAGCAGAACTACATCGGCTCGTCTACGCTCAAGTTTTATCATCACATGCATTGACTTGGCAAATTGCTCCAATCTATTTGTCCTCGTGTATGAAGCAGGGAATGGGTTTGTTAGAGATTTTGCTGTCTAAGCTGCCTACTGAACACAATGAAACACTGCTTAAGAATATAGAGATTTGTCGTCTTTACGAACTTGATACTGTTAGCTCAGACATTATGAAGATTGCTGGGGTGTACCATTGGAAGCATGGTAGAAAAGGTTGTGGAGTTTTCTGGCTTCAGCAAGCCCGAGATGAAGTTCGCCTTACCAGGATTGCTCAGCATTTATTTGATTCTGTTGGAAAGTCAATCTCTGATGAGAGTTTTAAGCAATGGGAAGGCTTAATTGAATTGTTGGGGTCTGAATCCAAGACTACCGGGGGTCTAGACTTCCTGCACAAGTATAGGGATTTCAAGAAGTCTCTCAAGCAGGTTCGTGACGGAAAAACTACTGATGCTGCTCATCAAGCTGTAGAATCTCTGATATCGCTTATGAAAAACCCATCTACACCTCAACGCTTCTGGCTGCCTCTTCTTCATGACTCGTTGAAGCTGCTAAACTGGCAGGAGCGTCCTCTGCTAAATGTCTCTCAGACAGAGCTCTTGCTCAATAAACTGCAAGAGTTGTCCATGGCTAAGCTCCGTCCGGACTTTATCGAAGCAGACTTGCCATCAGAGGCCCTGAGCTGTGTGAGGTTGGCTCTTGCTTCAAATCTTGGACGAGCCATCTTGGAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nucleopor_Nup85

Protein Analysis

713

Amino Acids

80.25

Weight (kDa)

5.86

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleopor_Nup85 PF07575 78 - 674 2.1e-143 Nup85 Nucleoporin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32910
fragaria_vesca FvH4_2g35520
malus_domestica MD15G1093200.v1.1
prunus_persica Prupe.1G448000_v2.0.a1
pyrus_communis pycom15g08600
rosa_chinensis RchiOBHm_Chr6g0306261
rosa_laevigata RLG00000010809
rosa_multiflora Rmu_sc0017002.1_g000002 Rmu_sc0037804.1_g000002
rosa_roxburghii Rroxscaffold_7G00161900
rosa_rugosa Rorug06G0348400
rosa_samantha Rh6AG460900 Rh6BG440100 Rh6CG475200 Rh6DG461500
rosa_wichuraiana Rw6G040160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1819
AccB1I GGYRCC 1 cut(s) 1175
AccB7I CCANNNNNTGG 1 cut(s) 126
AccI GTMKAC 1 cut(s) 1383
AccII CGCG 2 cut(s) 135, 150
AccIII TCCGGA 1 cut(s) 2044
AciI CCGC 8 cut(s) 62, 133, 135, 167, 195, 256, 304, 1238
AclWI GGATC 4 cut(s) 431, 446, 674, 769
AcsI RAATTY 2 cut(s) 403, 637
AcuI CTGAAG 2 cut(s) 956, 1622
AcyI GRCGYC 2 cut(s) 9, 246
AfaI GTAC 4 cut(s) 75, 389, 607, 1595
AfiI CCNNNNNNNGG 4 cut(s) 37, 126, 255, 1172
AflII CTTAAG 1 cut(s) 1520
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 7 cut(s) 627, 1006, 1162, 1748, 1813, 1948, 2109
AhdI GACNNNNNGTC 1 cut(s) 538
AjnI CCWGG 3 cut(s) 36, 856, 1667
AjuI GAANNNNNNNTTGG 2 cut(s) 607, 639
Alw21I GWGCWC 4 cut(s) 60, 314, 937, 2001
Alw26I GTCTC 8 cut(s) 46, 222, 342, 546, 788, 1124, 1824, 1990
AlwI GGATC 4 cut(s) 431, 446, 674, 769
AlwNI CAGNNNCTG 2 cut(s) 434, 824
Ama87I CYCGRG 3 cut(s) 601, 993, 1647
Aor13HI TCCGGA 1 cut(s) 2044
AoxI GGCC 5 cut(s) 91, 189, 1103, 1259, 2076
ApeKI GCWGC 6 cut(s) 64, 500, 1492, 1856, 1924, 1951
ApoI RAATTY 2 cut(s) 403, 637
Asp700I GAANNNNTTC 1 cut(s) 1320
AspLEI GCGC 2 cut(s) 150, 753
AspS9I GGNCC 4 cut(s) 129, 431, 1259, 2077
AsuC2I CCSGG 4 cut(s) 6, 994, 995, 1777
AsuHPI GGTGA 6 cut(s) 77, 454, 602, 751, 893, 974
AvaI CYCGRG 3 cut(s) 601, 993, 1647
AvaII GGWCC 2 cut(s) 129, 431
BaeGI GKGCMC 1 cut(s) 1180
BanI GGYRCC 1 cut(s) 1175
BanII GRGCYC 2 cut(s) 60, 2001
BarI GAAGNNNNNNTAC 2 cut(s) 251, 283
BauI CACGAG 2 cut(s) 124, 1444
BbsI GAAGAC 2 cut(s) 186, 1313
Bbv12I GWGCWC 4 cut(s) 60, 314, 937, 2001
BbvI GCAGC 6 cut(s) 76, 512, 1479, 1843, 1911, 1938
BceAI ACGGC 5 cut(s) 154, 268, 286, 337, 578
BciT130I CCWGG 3 cut(s) 38, 858, 1669
BclI TGATCA 2 cut(s) 979, 1306
BcnI CCSGG 4 cut(s) 6, 994, 995, 1777
BcoDI GTCTC 8 cut(s) 46, 222, 342, 546, 788, 1124, 1824, 1990
BfaI CTAG 4 cut(s) 950, 1139, 1248, 1784
BfmI CTRYAG 2 cut(s) 955, 1869
BfrI CTTAAG 1 cut(s) 1520
BfuAI ACCTGC 1 cut(s) 1819
BisI GCNGC 8 cut(s) 65, 136, 304, 501, 1493, 1857, 1925, 1952
BlpI GCTNAGC 2 cut(s) 1677, 2034
BlsI GCNGC 8 cut(s) 66, 137, 305, 502, 1494, 1858, 1926, 1953
BmcAI AGTACT 1 cut(s) 607
Bme1390I CCNGG 7 cut(s) 6, 38, 858, 994, 995, 1669, 1777
Bme18I GGWCC 2 cut(s) 129, 431
BmeRI GACNNNNNGTC 1 cut(s) 538
BmeT110I CYCGRG 3 cut(s) 601, 993, 1647
BmgT120I GGNCC 4 cut(s) 129, 431, 1259, 2077
BmiI GGNNCC 4 cut(s) 131, 274, 483, 1177
BmrFI CCNGG 7 cut(s) 6, 38, 858, 994, 995, 1669, 1777
BmrI ACTGGG 1 cut(s) 1308
BmsI GCATC 3 cut(s) 23, 369, 1843
BmuI ACTGGG 1 cut(s) 1308
BpiI GAAGAC 2 cut(s) 186, 1313
BplI GAGNNNNNCTC 4 cut(s) 473, 505, 2083, 2115
BpmI CTGGAG 1 cut(s) 281
Bpu10I CCTNAGC 1 cut(s) 2081
Bpu1102I GCTNAGC 2 cut(s) 1677, 2034
BpuEI CTTGAG 3 cut(s) 80, 1374, 1808
BpuMI CCSGG 4 cut(s) 6, 994, 995, 1777
Bsa29I ATCGAT 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 848
BsaBI GATNNNNATC 1 cut(s) 984
BsaHI GRCGYC 2 cut(s) 9, 246
BsaI GGTCTC 2 cut(s) 46, 1124
BsaWI WCCGGW 2 cut(s) 439, 2044
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 126, 255, 1172
Bse1I ACTGG 4 cut(s) 717, 1070, 1303, 1964
Bse3DI GCAATG 1 cut(s) 1736
Bse8I GATNNNNATC 1 cut(s) 984
BseAI TCCGGA 1 cut(s) 2044
BseBI CCWGG 3 cut(s) 38, 858, 1669
BseCI ATCGAT 1 cut(s) 363
BseGI GGATG 2 cut(s) 700, 1272
BseJI GATNNNNATC 1 cut(s) 984
BseLI CCNNNNNNNGG 4 cut(s) 37, 126, 255, 1172
BseMI GCAATG 1 cut(s) 1736
BseMII CTCAG 7 cut(s) 232, 355, 557, 1581, 1691, 2003, 2072
BseNI ACTGG 4 cut(s) 717, 1070, 1303, 1964
BseRI GAGGAG 2 cut(s) 401, 494
BseSI GKGCMC 1 cut(s) 1180
BseXI GCAGC 6 cut(s) 76, 512, 1479, 1843, 1911, 1938
BseYI CCCAGC 1 cut(s) 1586
BsgI GTGCAG 1 cut(s) 1778
Bsh1236I CGCG 2 cut(s) 135, 150
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 5 cut(s) 93, 191, 1105, 1261, 2078
BshNI GGYRCC 1 cut(s) 1175
BshVI ATCGAT 1 cut(s) 363
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 4 cut(s) 60, 314, 937, 2001
BsiHKCI CYCGRG 3 cut(s) 601, 993, 1647
BsiSI CCGG 8 cut(s) 6, 24, 53, 307, 440, 994, 1776, 2045
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 4 cut(s) 37, 126, 255, 1172
BsmAI GTCTC 8 cut(s) 46, 222, 342, 546, 788, 1124, 1824, 1990
BsmBI CGTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 115
BsmI GAATGC 2 cut(s) 890, 1247
BsnI GGCC 5 cut(s) 93, 191, 1105, 1261, 2078
Bso31I GGTCTC 2 cut(s) 46, 1124
BsoBI CYCGRG 3 cut(s) 601, 993, 1647
Bsp1286I GDGCHC 5 cut(s) 60, 314, 937, 1180, 2001
Bsp13I TCCGGA 1 cut(s) 2044
Bsp143I GATC 9 cut(s) 105, 261, 436, 451, 679, 761, 775, 979, 1306
Bsp1720I GCTNAGC 2 cut(s) 1677, 2034
Bsp19I CCATGG 4 cut(s) 88, 548, 1262, 2028
BspACI CCGC 8 cut(s) 62, 133, 135, 167, 195, 256, 304, 1238
BspANI GGCC 5 cut(s) 93, 191, 1105, 1261, 2078
BspCNI CTCAG 7 cut(s) 231, 354, 556, 1580, 1690, 2002, 2073
BspDI ATCGAT 1 cut(s) 363
BspEI TCCGGA 1 cut(s) 2044
BspFNI CGCG 2 cut(s) 135, 150
BspHI TCATGA 1 cut(s) 1936
BspLI GGNNCC 4 cut(s) 131, 274, 483, 1177
BspMAI CTGCAG 1 cut(s) 959
BspMI ACCTGC 1 cut(s) 1819
BspPI GGATC 4 cut(s) 431, 446, 674, 769
BspT107I GGYRCC 1 cut(s) 1175
BspTI CTTAAG 1 cut(s) 1520
BspTNI GGTCTC 2 cut(s) 46, 1124
BsrDI GCAATG 1 cut(s) 1736
BsrI ACTGG 4 cut(s) 717, 1070, 1303, 1964
BssMI GATC 9 cut(s) 105, 261, 436, 451, 679, 761, 775, 979, 1306
BssNI GRCGYC 2 cut(s) 9, 246
BssSI CACGAG 2 cut(s) 124, 1444
BssT1I CCWWGG 5 cut(s) 88, 548, 1210, 1262, 2028
Bst2BI CACGAG 2 cut(s) 124, 1444
Bst2UI CCWGG 3 cut(s) 38, 858, 1669
Bst4CI ACNGT 5 cut(s) 619, 747, 791, 1114, 1561
Bst6I CTCTTC 1 cut(s) 1935
BstACI GRCGYC 2 cut(s) 9, 246
BstAFI CTTAAG 1 cut(s) 1520
BstBAI YACGTR 1 cut(s) 848
BstC8I GCNNGC 5 cut(s) 112, 193, 596, 755, 1644
BstDEI CTNAG 9 cut(s) 218, 341, 543, 1488, 1567, 1677, 1989, 2034, 2081
BstDSI CCRYGG 5 cut(s) 88, 133, 548, 1262, 2028
BstF5I GGATG 2 cut(s) 700, 1272
BstFNI CGCG 2 cut(s) 135, 150
BstHHI GCGC 2 cut(s) 150, 753
BstKTI GATC 9 cut(s) 108, 264, 439, 454, 682, 764, 778, 982, 1309
BstMAI GTCTC 8 cut(s) 46, 222, 342, 546, 788, 1124, 1824, 1990
BstMBI GATC 9 cut(s) 105, 261, 436, 451, 679, 761, 775, 979, 1306
BstMCI CGRYCG 1 cut(s) 108
BstNI CCWGG 3 cut(s) 38, 858, 1669
BstNSI RCATGY 3 cut(s) 337, 1132, 1409
BstSCI CCNGG 7 cut(s) 4, 36, 856, 992, 993, 1667, 1775
BstSFI CTRYAG 2 cut(s) 955, 1869
BstSLI GKGCMC 1 cut(s) 1180
BstUI CGCG 2 cut(s) 135, 150
BstV1I GCAGC 6 cut(s) 76, 512, 1479, 1843, 1911, 1938
BstV2I GAAGAC 2 cut(s) 186, 1313
BstX2I RGATCY 1 cut(s) 761
BstYI RGATCY 1 cut(s) 761
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 5 cut(s) 93, 191, 1105, 1261, 2078
BsuTUI ATCGAT 1 cut(s) 363
BtgI CCRYGG 5 cut(s) 88, 133, 548, 1262, 2028
BtgZI GCGATG 1 cut(s) 333
BtsCI GGATG 2 cut(s) 700, 1272
BtsI GCAGTG 2 cut(s) 964, 1514
BtsIMutI CAGTG 7 cut(s) 710, 964, 980, 1063, 1119, 1296, 1514
BveI ACCTGC 1 cut(s) 1819
Cac8I GCNNGC 5 cut(s) 112, 193, 596, 755, 1644
CaiI CAGNNNCTG 2 cut(s) 434, 824
CciI TCATGA 1 cut(s) 1936
CfoI GCGC 2 cut(s) 150, 753
Cfr13I GGNCC 4 cut(s) 129, 431, 1259, 2077
Cfr42I CCGCGG 1 cut(s) 136
Cfr9I CCCGGG 1 cut(s) 993
ClaI ATCGAT 1 cut(s) 363
CseI GACGC 3 cut(s) 254, 842, 1958
Csp6I GTAC 4 cut(s) 74, 388, 606, 1594
CviQI GTAC 4 cut(s) 74, 388, 606, 1594
DdeI CTNAG 9 cut(s) 218, 341, 543, 1488, 1567, 1677, 1989, 2034, 2081
DpnI GATC 9 cut(s) 107, 263, 438, 453, 681, 763, 777, 981, 1308
DpnII GATC 9 cut(s) 105, 261, 436, 451, 679, 761, 775, 979, 1306
DraI TTTAAA 2 cut(s) 468, 892
DriI GACNNNNNGTC 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 1935
Eam1105I GACNNNNNGTC 1 cut(s) 538
EarI CTCTTC 1 cut(s) 1935
EciI GGCGGA 3 cut(s) 156, 271, 1253
Ecl136II GAGCTC 2 cut(s) 58, 1999
Eco130I CCWWGG 5 cut(s) 88, 548, 1210, 1262, 2028
Eco24I GRGCYC 2 cut(s) 60, 2001
Eco31I GGTCTC 2 cut(s) 46, 1124
Eco32I GATATC 1 cut(s) 1884
Eco47I GGWCC 2 cut(s) 129, 431
Eco53kI GAGCTC 2 cut(s) 58, 1999
Eco57I CTGAAG 2 cut(s) 956, 1622
Eco88I CYCGRG 3 cut(s) 601, 993, 1647
EcoICRI GAGCTC 2 cut(s) 58, 1999
EcoO109I RGGNCCY 2 cut(s) 431, 2077
EcoRII CCWGG 3 cut(s) 36, 856, 1667
EcoRV GATATC 1 cut(s) 1884
EcoT14I CCWWGG 5 cut(s) 88, 548, 1210, 1262, 2028
EcoT22I ATGCAT 1 cut(s) 1411
EcoT38I GRGCYC 2 cut(s) 60, 2001
ErhI CCWWGG 5 cut(s) 88, 548, 1210, 1262, 2028
Esp3I CGTCTC 1 cut(s) 222
FalI AAGNNNNNCTT 2 cut(s) 1647, 1679
FaqI GGGAC 1 cut(s) 115
FauI CCCGC 3 cut(s) 69, 140, 188
FbaI TGATCA 2 cut(s) 979, 1306
FblI GTMKAC 1 cut(s) 1383
Fnu4HI GCNGC 8 cut(s) 65, 136, 304, 501, 1493, 1857, 1925, 1952
FokI GGATG 2 cut(s) 707, 1279
FriOI GRGCYC 2 cut(s) 60, 2001
Fsp4HI GCNGC 8 cut(s) 65, 136, 304, 501, 1493, 1857, 1925, 1952
FspBI CTAG 4 cut(s) 950, 1139, 1248, 1784
GlaI GCGC 2 cut(s) 149, 752
GluI GCNGC 8 cut(s) 65, 136, 304, 501, 1493, 1857, 1925, 1952
GsaI CCCAGC 1 cut(s) 1590
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 5 cut(s) 93, 191, 1105, 1261, 2078
HapII CCGG 8 cut(s) 6, 24, 53, 307, 440, 994, 1776, 2045
HgaI GACGC 3 cut(s) 254, 842, 1958
HhaI GCGC 2 cut(s) 150, 753
Hin1I GRCGYC 2 cut(s) 9, 246
Hin6I GCGC 2 cut(s) 148, 751
HinP1I GCGC 2 cut(s) 148, 751
HincII GTYRAC 1 cut(s) 1293
HindII GTYRAC 1 cut(s) 1293
HinfI GANTC 8 cut(s) 425, 474, 963, 1206, 1691, 1763, 1874, 1940
HpaII CCGG 8 cut(s) 6, 24, 53, 307, 440, 994, 1776, 2045
HphI GGTGA 6 cut(s) 77, 454, 602, 751, 893, 974
Hpy166II GTNNAC 4 cut(s) 76, 1293, 1384, 1594
Hpy188I TCNGA 9 cut(s) 105, 175, 456, 1570, 1714, 1762, 1881, 1992, 2074
Hpy8I GTNNAC 4 cut(s) 76, 1293, 1384, 1594
Hpy99I CGWCG 3 cut(s) 14, 74, 248
HpyAV CCTTC 1 cut(s) 1730
HpyCH4III ACNGT 5 cut(s) 619, 747, 791, 1114, 1561
HpyCH4IV ACGT 1 cut(s) 847
HpyCH4V TGCA 7 cut(s) 530, 757, 957, 1050, 1409, 1795, 2017
HpyF3I CTNAG 9 cut(s) 218, 341, 543, 1488, 1567, 1677, 1989, 2034, 2081
HpySE526I ACGT 1 cut(s) 847
Hsp92I GRCGYC 2 cut(s) 9, 246
HspAI GCGC 2 cut(s) 148, 751
Kpn2I TCCGGA 1 cut(s) 2044
Ksp22I TGATCA 2 cut(s) 979, 1306
KspI CCGCGG 1 cut(s) 136
Kzo9I GATC 9 cut(s) 105, 261, 436, 451, 679, 761, 775, 979, 1306
LmnI GCTCC 9 cut(s) 55, 63, 278, 309, 481, 508, 1432, 1966, 2043
Lsp1109I GCAGC 6 cut(s) 76, 512, 1479, 1843, 1911, 1938
LweI GCATC 3 cut(s) 23, 369, 1843
MaeI CTAG 4 cut(s) 950, 1139, 1248, 1784
MaeII ACGT 1 cut(s) 847
MaeIII GTNAC 2 cut(s) 277, 1835
MalI GATC 9 cut(s) 107, 263, 438, 453, 681, 763, 777, 981, 1308
MboI GATC 9 cut(s) 105, 261, 436, 451, 679, 761, 775, 979, 1306
MfeI CAATTG 2 cut(s) 554, 1157
MflI RGATCY 1 cut(s) 761
MhlI GDGCHC 5 cut(s) 60, 314, 937, 1180, 2001
MluCI AATT 9 cut(s) 403, 554, 637, 939, 1157, 1353, 1422, 1743, 1748
MlyI GAGTC 2 cut(s) 483, 1934
MmeI TCCRAC 2 cut(s) 345, 1678
Mph1103I ATGCAT 1 cut(s) 1411
MroI TCCGGA 1 cut(s) 2044
MroXI GAANNNNTTC 1 cut(s) 1320
MseI TTAA 6 cut(s) 467, 891, 1109, 1521, 1725, 1742
MspA1I CMGCKG 2 cut(s) 135, 195
MspCI CTTAAG 1 cut(s) 1520
MspI CCGG 8 cut(s) 6, 24, 53, 307, 440, 994, 1776, 2045
MspR9I CCNGG 7 cut(s) 6, 38, 858, 994, 995, 1669, 1777
MunI CAATTG 2 cut(s) 554, 1157
Mva1269I GAATGC 2 cut(s) 890, 1247
MvaI CCWGG 3 cut(s) 38, 858, 1669
MvnI CGCG 2 cut(s) 135, 150
NciI CCSGG 4 cut(s) 6, 994, 995, 1777
NcoI CCATGG 4 cut(s) 88, 548, 1262, 2028
NdeII GATC 9 cut(s) 105, 261, 436, 451, 679, 761, 775, 979, 1306
NlaIV GGNNCC 4 cut(s) 131, 274, 483, 1177
NmuCI GTSAC 2 cut(s) 277, 1835
NsiI ATGCAT 1 cut(s) 1411
NspI RCATGY 3 cut(s) 337, 1132, 1409
PaeR7I CTCGAG 1 cut(s) 601
PagI TCATGA 1 cut(s) 1936
PciI ACATGT 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 420
PctI GAATGC 2 cut(s) 890, 1247
PdmI GAANNNNTTC 1 cut(s) 1320
PfeI GAWTC 6 cut(s) 425, 963, 1206, 1691, 1763, 1874
PflMI CCANNNNNTGG 1 cut(s) 126
PfoI TCCNGGA 1 cut(s) 856
PkrI GCNGC 8 cut(s) 66, 137, 305, 502, 1494, 1858, 1926, 1953
Ple19I CGATCG 1 cut(s) 108
PleI GAGTC 2 cut(s) 482, 1934
PpsI GAGTC 2 cut(s) 482, 1934
Ppu21I YACGTR 1 cut(s) 848
PpuMI RGGWCCY 1 cut(s) 431
PscI ACATGT 1 cut(s) 333
Psp124BI GAGCTC 2 cut(s) 60, 2001
Psp5II RGGWCCY 1 cut(s) 431
Psp6I CCWGG 3 cut(s) 36, 856, 1667
PspFI CCCAGC 1 cut(s) 1586
PspGI CCWGG 3 cut(s) 36, 856, 1667
PspN4I GGNNCC 4 cut(s) 131, 274, 483, 1177
PspPI GGNCC 4 cut(s) 129, 431, 1259, 2077
PspPPI RGGWCCY 1 cut(s) 431
PstI CTGCAG 1 cut(s) 959
PstNI CAGNNNCTG 2 cut(s) 434, 824
PsuI RGATCY 1 cut(s) 761
PvuI CGATCG 1 cut(s) 108
RsaI GTAC 4 cut(s) 75, 389, 607, 1595
RsaNI GTAC 4 cut(s) 74, 388, 606, 1594
SacI GAGCTC 2 cut(s) 60, 2001
SacII CCGCGG 1 cut(s) 136
SaqAI TTAA 6 cut(s) 467, 891, 1109, 1521, 1725, 1742
SatI GCNGC 8 cut(s) 65, 136, 304, 501, 1493, 1857, 1925, 1952
Sau3AI GATC 9 cut(s) 105, 261, 436, 451, 679, 761, 775, 979, 1306
Sau96I GGNCC 4 cut(s) 129, 431, 1259, 2077
ScaI AGTACT 1 cut(s) 607
SchI GAGTC 2 cut(s) 483, 1934
ScrFI CCNGG 7 cut(s) 6, 38, 858, 994, 995, 1669, 1777
SduI GDGCHC 5 cut(s) 60, 314, 937, 1180, 2001
SfaNI GCATC 3 cut(s) 23, 369, 1843
SfcI CTRYAG 2 cut(s) 955, 1869
Sfr274I CTCGAG 1 cut(s) 601
Sfr303I CCGCGG 1 cut(s) 136
SgrBI CCGCGG 1 cut(s) 136
SinI GGWCC 2 cut(s) 129, 431
SlaI CTCGAG 1 cut(s) 601
SmaI CCCGGG 1 cut(s) 995
SmlI CTYRAG 5 cut(s) 95, 601, 1389, 1520, 1823
SmoI CTYRAG 5 cut(s) 95, 601, 1389, 1520, 1823
Sse9I AATT 9 cut(s) 403, 554, 637, 939, 1157, 1353, 1422, 1743, 1748
SsiI CCGC 8 cut(s) 62, 133, 135, 167, 195, 256, 304, 1238
SspMI CTAG 4 cut(s) 950, 1139, 1248, 1784
SstI GAGCTC 2 cut(s) 60, 2001
StyD4I CCNGG 7 cut(s) 4, 36, 856, 992, 993, 1667, 1775
StyI CCWWGG 5 cut(s) 88, 548, 1210, 1262, 2028
TaaI ACNGT 5 cut(s) 619, 747, 791, 1114, 1561
TaiI ACGT 1 cut(s) 850
TaqI TCGA 8 cut(s) 329, 363, 423, 477, 602, 774, 1122, 2055
TasI AATT 9 cut(s) 403, 554, 637, 939, 1157, 1353, 1422, 1743, 1748
TatI WGTACW 2 cut(s) 387, 605
TauI GCSGC 2 cut(s) 138, 306
TfiI GAWTC 6 cut(s) 425, 963, 1206, 1691, 1763, 1874
Tru1I TTAA 6 cut(s) 467, 891, 1109, 1521, 1725, 1742
Tru9I TTAA 6 cut(s) 467, 891, 1109, 1521, 1725, 1742
TscAI CASTG 7 cut(s) 717, 964, 980, 1070, 1119, 1303, 1521
TseFI GTSAC 2 cut(s) 277, 1835
TseI GCWGC 6 cut(s) 64, 500, 1492, 1856, 1924, 1951
Tsp45I GTSAC 2 cut(s) 277, 1835
TspGWI ACGGA 5 cut(s) 152, 246, 265, 1854, 2030
TspMI CCCGGG 1 cut(s) 993
TspRI CASTG 7 cut(s) 717, 964, 980, 1070, 1119, 1303, 1521
Van91I CCANNNNNTGG 1 cut(s) 126
Vha464I CTTAAG 1 cut(s) 1520
VpaK11BI GGWCC 2 cut(s) 129, 431
XapI RAATTY 2 cut(s) 403, 637
XbaI TCTAGA 2 cut(s) 1247, 1783
XceI RCATGY 3 cut(s) 337, 1132, 1409
XcmI CCANNNNNNNNNTGG 1 cut(s) 1604
XhoI CTCGAG 1 cut(s) 601
XmaI CCCGGG 1 cut(s) 993
XmiI GTMKAC 1 cut(s) 1383
XmnI GAANNNNTTC 1 cut(s) 1320
XspI CTAG 4 cut(s) 950, 1139, 1248, 1784
ZrmI AGTACT 1 cut(s) 607
Zsp2I ATGCAT 1 cut(s) 1411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.