Rmu_sc0017002.1_g000002

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017002.1
OG0015152
Physical Location & Seq
Reverse (-)
1455 .. 3329
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017002.1_g000002.1.cds

Sequence Viewer

Length: 690 bp
atgaagcagggaatgggtttgttagagattctattgtctaagctgcctactgaacataatgaaacactgcttaagaatatagagatttgtcgtctttacgaacttgatactgttagttcaaacgtaatgaagattgcaggggtttaccattggaagcatggtaggaaaggttgtggagttttctggcttcagcaagcccgagatgaagttcgccttaccaggattgctcaacatttgtttgattctgttggaaagtcgatctccgatgagagtttcaagcaatgggaaggcttgattgaattgttggggtctgagtccaagactactgggggtctagacttcctgcacaagtatagggatttcaagaagtccctcaagcaggttcgtgatggaaaaactactgatgctgcccatcaagctgtagaatctctgatatcgctcatgaaaaacccatctactcctcagcgcttctggctgcctcttcttcatgactcactgaagctgctaaactggcaggagcgtcctctgctaaatgtctctcagacagacctcttgctcaataaactgcaagagttgtccatggctaagctccgtccagactttattgaagcagacttgccatcagaggccctgagttgtgtgaggttggctcttgcttcaaatcttggacgtgccatcttggaggagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nucleopor_Nup85

Protein Analysis

229

Amino Acids

26.06

Weight (kDa)

7.75

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32910
fragaria_vesca FvH4_2g35520
malus_domestica MD15G1093200.v1.1
prunus_persica Prupe.1G448000_v2.0.a1
pyrus_communis pycom15g08600
rosa_chinensis RchiOBHm_Chr6g0306261
rosa_laevigata RLG00000010809
rosa_multiflora Rmu_sc0017002.1_g000002 Rmu_sc0037804.1_g000002
rosa_roxburghii Rroxscaffold_7G00161900
rosa_rugosa Rorug06G0348400
rosa_samantha Rh6AG460900 Rh6BG440100 Rh6CG475200 Rh6DG461500
rosa_wichuraiana Rw6G040160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 370
AcuI CTGAAG 2 cut(s) 173, 518
AfeI AGCGCT 1 cut(s) 467
AfiI CCNNNNNNNGG 1 cut(s) 379
AflII CTTAAG 1 cut(s) 71
AgsI TTSAA 6 cut(s) 120, 277, 299, 364, 608, 660
AjiI CACGTC 1 cut(s) 671
AjnI CCWGG 1 cut(s) 218
AluBI AGCT 4 cut(s) 43, 419, 502, 589
AluI AGCT 4 cut(s) 43, 419, 502, 589
Alw26I GTCTC 1 cut(s) 541
Ama87I CYCGRG 1 cut(s) 198
Aor51HI AGCGCT 1 cut(s) 467
AoxI GGCC 1 cut(s) 627
ApeKI GCWGC 4 cut(s) 43, 407, 475, 502
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 628
AvaI CYCGRG 1 cut(s) 198
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 4 cut(s) 30, 394, 462, 489
BccI CCATC 5 cut(s) 383, 420, 460, 628, 683
BciT130I CCWGG 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 541
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 420
BfoI RGCGCY 1 cut(s) 469
BfrI CTTAAG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 370
BisI GCNGC 4 cut(s) 44, 408, 476, 503
BlpI GCTNAGC 1 cut(s) 585
BlsI GCNGC 4 cut(s) 45, 409, 477, 504
Bme1390I CCNGG 1 cut(s) 220
BmeT110I CYCGRG 1 cut(s) 198
BmgBI CACGTC 1 cut(s) 671
BmgT120I GGNCC 1 cut(s) 628
BmrFI CCNGG 1 cut(s) 220
BmrI ACTGGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 394
BmuI ACTGGG 1 cut(s) 336
BplI GAGNNNNNCTC 2 cut(s) 634, 666
Bpu10I CCTNAGC 1 cut(s) 462
Bpu1102I GCTNAGC 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 579
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 2 cut(s) 331, 515
Bse3DI GCAATG 1 cut(s) 287
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 579
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMI GCAATG 1 cut(s) 287
BseMII CTCAG 4 cut(s) 303, 476, 554, 623
BseNI ACTGG 2 cut(s) 331, 515
BseRI GAGGAG 1 cut(s) 450
BseXI GCAGC 4 cut(s) 30, 394, 462, 489
BsgI GTGCAG 1 cut(s) 329
BshFI GGCC 1 cut(s) 629
BsiHKCI CYCGRG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 1 cut(s) 541
BsmFI GGGAC 1 cut(s) 355
BsnI GGCC 1 cut(s) 629
BsoBI CYCGRG 1 cut(s) 198
Bsp143I GATC 1 cut(s) 258
Bsp1720I GCTNAGC 1 cut(s) 585
Bsp19I CCATGG 1 cut(s) 579
BspANI GGCC 1 cut(s) 629
BspCNI CTCAG 4 cut(s) 304, 475, 553, 624
BspHI TCATGA 2 cut(s) 441, 487
BspMI ACCTGC 1 cut(s) 370
BspTI CTTAAG 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 287
BsrI ACTGG 2 cut(s) 331, 515
BssECI CCNNGG 1 cut(s) 579
BssMI GATC 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 579
Bst2UI CCWGG 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 486
BstAFI CTTAAG 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 6 cut(s) 39, 312, 462, 540, 585, 632
BstDSI CCRYGG 1 cut(s) 579
BstENI CCTNNNNNAGG 1 cut(s) 377
BstH2I RGCGCY 1 cut(s) 469
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 1 cut(s) 541
BstMBI GATC 1 cut(s) 258
BstMWI GCNNNNNNNGC 4 cut(s) 416, 472, 511, 526
BstNI CCWGG 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 218
BstSFI CTRYAG 1 cut(s) 420
BstV1I GCAGC 4 cut(s) 30, 394, 462, 489
BsuRI GGCC 1 cut(s) 629
BtgI CCRYGG 1 cut(s) 579
BtrI CACGTC 1 cut(s) 671
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 2 cut(s) 65, 494
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 195
CciI TCATGA 2 cut(s) 441, 487
CfoI GCGC 1 cut(s) 468
Cfr13I GGNCC 1 cut(s) 628
CseI GACGC 1 cut(s) 509
CviAII CATG 4 cut(s) 158, 442, 488, 580
DdeI CTNAG 6 cut(s) 39, 312, 462, 540, 585, 632
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 579
Eco32I GATATC 1 cut(s) 435
Eco47III AGCGCT 1 cut(s) 467
Eco57I CTGAAG 2 cut(s) 173, 518
Eco88I CYCGRG 1 cut(s) 198
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 628
EcoRII CCWGG 1 cut(s) 218
EcoRV GATATC 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 579
ErhI CCWWGG 1 cut(s) 579
FaeI CATG 4 cut(s) 161, 445, 491, 583
FaiI YATR 7 cut(s) 57, 80, 159, 354, 443, 489, 581
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FaqI GGGAC 1 cut(s) 355
FatI CATG 4 cut(s) 157, 441, 487, 579
Fnu4HI GCNGC 4 cut(s) 44, 408, 476, 503
Fsp4HI GCNGC 4 cut(s) 44, 408, 476, 503
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 467
GluI GCNGC 4 cut(s) 44, 408, 476, 503
HaeII RGCGCY 1 cut(s) 469
HaeIII GGCC 1 cut(s) 629
HgaI GACGC 1 cut(s) 509
HhaI GCGC 1 cut(s) 468
Hin1II CATG 4 cut(s) 161, 445, 491, 583
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HinfI GANTC 5 cut(s) 28, 242, 314, 425, 491
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 5 cut(s) 265, 313, 432, 543, 625
Hpy188III TCNNGA 6 cut(s) 335, 364, 386, 442, 488, 596
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 2 cut(s) 123, 670
HpyCH4V TGCA 3 cut(s) 137, 346, 568
HpyF10VI GCNNNNNNNGC 4 cut(s) 416, 472, 511, 526
HpyF3I CTNAG 6 cut(s) 39, 312, 462, 540, 585, 632
HpySE526I ACGT 2 cut(s) 123, 670
Hsp92II CATG 4 cut(s) 161, 445, 491, 583
HspAI GCGC 1 cut(s) 466
Kzo9I GATC 1 cut(s) 258
LmnI GCTCC 2 cut(s) 517, 594
Lsp1109I GCAGC 4 cut(s) 30, 394, 462, 489
LweI GCATC 1 cut(s) 394
MaeI CTAG 1 cut(s) 335
MaeII ACGT 2 cut(s) 123, 670
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 3 cut(s) 142, 473, 476
MluCI AATT 1 cut(s) 299
MlyI GAGTC 2 cut(s) 323, 485
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 8 cut(s) 383, 471, 489, 534, 560, 619, 636, 676
MseI TTAA 1 cut(s) 72
MspCI CTTAAG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 220
MvaI CCWGG 1 cut(s) 220
MwoI GCNNNNNNNGC 4 cut(s) 416, 472, 511, 526
NcoI CCATGG 1 cut(s) 579
NdeII GATC 1 cut(s) 258
NlaIII CATG 4 cut(s) 161, 445, 491, 583
PagI TCATGA 2 cut(s) 441, 487
PfeI GAWTC 3 cut(s) 28, 242, 425
PkrI GCNGC 4 cut(s) 45, 409, 477, 504
PleI GAGTC 2 cut(s) 322, 485
PpsI GAGTC 2 cut(s) 322, 485
Psp6I CCWGG 1 cut(s) 218
PspGI CCWGG 1 cut(s) 218
PspPI GGNCC 1 cut(s) 628
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 4 cut(s) 44, 408, 476, 503
Sau3AI GATC 1 cut(s) 258
Sau96I GGNCC 1 cut(s) 628
SchI GAGTC 2 cut(s) 323, 485
ScrFI CCNGG 1 cut(s) 220
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 1 cut(s) 420
SmlI CTYRAG 2 cut(s) 71, 374
SmoI CTYRAG 2 cut(s) 71, 374
Sse9I AATT 1 cut(s) 299
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 218
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 2 cut(s) 126, 673
TaqI TCGA 1 cut(s) 257
TasI AATT 1 cut(s) 299
TfiI GAWTC 3 cut(s) 28, 242, 425
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 2 cut(s) 72, 501
TseI GCWGC 4 cut(s) 43, 407, 475, 502
TspDTI ATGAA 6 cut(s) 17, 75, 143, 219, 458, 476
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 2 cut(s) 72, 501
Vha464I CTTAAG 1 cut(s) 71
XagI CCTNNNNNAGG 1 cut(s) 377
XbaI TCTAGA 1 cut(s) 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.