MD15G1093200.v1.1

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015152
Physical Location & Seq
Forward (+)
6453444 .. 6459227
5784 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1093200.v1.1.491

Sequence Viewer

Length: 2175 bp
ATGCCCGGCGTCGCCTATGACTCCGGCGACACGCCCGGCGCATTAGGCTCCAATGACACCGCTATGGTCCCATACTCGCCGGAGATCCGGCAACCCGTCGTGTACTCACTTCACCACGGCCTCAACCCTCCGATCGCTCGCCTCTCCATCTCGTGGTCCCGGGGCAACACTCTGCGTGTGTCAGTTCTCCGTCCGCCTTCCGGCGAAGACTCCGAAAAGGATGAAGTTGGCGGGAAAGTGGTGGAGGTGAGGCTTAGTAATGGAGACGGCGAAAATGGCGATGCGAACTGGCGGAGGATCGCTTACGGTTCTGTGCCGCCGTTCGCCCTACTACAGAGCCGGAGGAGCTCGGTTGCGAGCTTATCGAAGGTGTCAATGGGTCCGTCGTTGTACAACATTGATTGGTGGGAGTATGTGATGGAGTATAGCAAGGACATAAATTCACTTCTTGGTAGCTCTAAGTCGCTTCCTAATCCAGTGATCGAAGACCCGAAAATGGTTTTAAGGAAAGTTGAGGAGCCTACTGCTTTAAAAGCTGCGTGGGAGTTGATGGAGATATTTTATGCAGACAAACAATCTCAACCATGGTTACCCGAACGGCTTGTTGATTGGCTGGCGGATCACGATAGTCTACTTTCCAGCACACAGCCAACAGTCCATTCGAAGCTTGTGGATTTTCAAAATGAACTTGTTAGGTTACAGGTTATTGAGGACGATCCTAAATATTGGGAAGTATTATCATCGGCATTGTCAGTTGGCTGGATTGAGATTGTGGTGAAAATGTTGCGGTTACATGGATCTTATCAACTCCATCAGCTTGGAAAACGTGAGACAGAGAATGGACTTGTAGAGACAGTTTCCGTCCTTATTTCAAAGATGCCACGCATGCGTCCTGAAGTAGAAGATGGAAAGTTAGGTGAATGCTTCAAAGCAAAGCCAGATTTTATCAAGGCATGGGAGAAATGGAGAGCGCAAATTACTAAACTTGACTGCAGTGCGTACTGGCGTCAGTGTGATCACCGTCAAACCCGGGAGGGGTTGAAAAATATGATACAAATTATGCTTGGAAACACTGACAATCTCTGCAACGTAACTTGCCATTGGATAGAGCTGTTTGTTTCTCACTTTCTATATGTCAGACCATTCACAGTGGGTCTTGAAAGCATGCATAGCCTAGCCCAGAAGTGCATGCAGTTAAAACCAATGTCTAGTTCCCATGGGTTGATAGCAATTCTTCTTGGAATCCTAGGGGAAAATACCGAGGTTGTCCTAGCAGAATGCTCAAGAGCATTTGGGCCTTGGATGGTTGCCCATGCCATTGAGTTGTTGACCACTGGGAGCGATGAAGCAGAACTTCTTCTACAGGAAGAACGCGATAGCTTGGGGGGAATTAGTATAGCAGAATTACATCGACTTGTCTATGCTCAAGTCCTATCGTCACATCCATTGACTTGGCAAATTGCTCCAATTTACTTGACATCTTGCACGAAGCAGGGAATGGCTTTGTTAGAGATTCTATTGTATAAGCTGCCAATTCAACATAATGAAACGCTACTTAAGAATATAGAGATATGCCGTCTTTATGAACTTGACACTGTTAGTTCAAACATTATGAAGATTGCTGGGGTGTACCATTGGAAGCATGGTAGGAAAGGTGCTGGAGTTTTTTGGCTTCAACAAGCCCGAGATGAAGTTCGTCTTAGCAGGATTGCTCAGCAATTGTTTGATTCTGTTGGAAAGTCGATATCTGATGAAAGTTTCAAGCAATGGGAAGGCTTGATTGAATTGTTGGGTTCTGAATCCAAGGCTACAGGGGGTCTCGACTTTCTGCACAAGTATAGGGATTTCAAAAAGTCCCTTAAGCAAGTTTATGATGGAAAAACTACTGATGCTGCTCGGCAAGCTGTAGAATCTTTGATATCGCTTATGAAAAACCCATCTACGCCCCAGCGCTTTTGGCTGCCTCTTCTGCATGACTCGTTAAAGCTGCTTAACTGGCCGGACCGGCCTCTGCTAGATGTGTCTCAGACAACCCTCCTGTTGAATAAACTGCAAGAGTTGTCCATGGCTAAGCTCCGTCCTGACTTTATCGAGGCAGACTTACCACCGCAAGCCCTCGTTTCTGTACGGTTAGCTCTTGCTGCAAATCTCGGCCGTGCCACCTTGGAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nucleopor_Nup85

Protein Analysis

725

Amino Acids

81.58

Weight (kDa)

6.07

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleopor_Nup85 PF07575 93 - 686 1.1e-146 Nup85 Nucleoporin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32910
fragaria_vesca FvH4_2g35520
malus_domestica MD15G1093200.v1.1
prunus_persica Prupe.1G448000_v2.0.a1
pyrus_communis pycom15g08600
rosa_chinensis RchiOBHm_Chr6g0306261
rosa_laevigata RLG00000010809
rosa_multiflora Rmu_sc0017002.1_g000002 Rmu_sc0037804.1_g000002
rosa_roxburghii Rroxscaffold_7G00161900
rosa_rugosa Rorug06G0348400
rosa_samantha Rh6AG460900 Rh6BG440100 Rh6CG475200 Rh6DG461500
rosa_wichuraiana Rw6G040160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 153
AccI GTMKAC 1 cut(s) 631
AccII CGCG 1 cut(s) 1374
AciI CCGC 8 cut(s) 60, 194, 231, 292, 317, 617, 787, 2108
AclWI GGATC 5 cut(s) 79, 305, 627, 710, 805
AcoI YGGCCR 2 cut(s) 1997, 2152
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 1 cut(s) 915
AcyI GRCGYC 2 cut(s) 9, 1006
AfaI GTAC 5 cut(s) 104, 392, 1001, 1631, 2127
AfeI AGCGCT 1 cut(s) 1952
AfiI CCNNNNNNNGG 4 cut(s) 153, 200, 496, 1035
AflII CTTAAG 2 cut(s) 1556, 1859
AjuI GAANNNNNNNTTGG 4 cut(s) 643, 675, 1195, 1227
Alw21I GWGCWC 1 cut(s) 350
Alw26I GTCTC 5 cut(s) 258, 824, 845, 1823, 2028
AlwI GGATC 5 cut(s) 79, 305, 627, 710, 805
Ama87I CYCGRG 3 cut(s) 159, 1029, 1683
Aor51HI AGCGCT 1 cut(s) 1952
AoxI GGCC 5 cut(s) 118, 1295, 1997, 2006, 2152
ApeKI GCWGC 6 cut(s) 536, 1528, 1892, 1960, 1987, 2141
ApoI RAATTY 1 cut(s) 439
Asp700I GAANNNNTTC 1 cut(s) 1356
AspA2I CCTAGG 1 cut(s) 1246
AspLEI GCGC 3 cut(s) 41, 973, 1953
AspS9I GGNCC 5 cut(s) 67, 156, 380, 1295, 2002
AsuC2I CCSGG 6 cut(s) 6, 36, 160, 161, 1030, 1031
AsuHPI GGTGA 5 cut(s) 104, 259, 787, 929, 1010
AsuII TTCGAA 1 cut(s) 662
AvaI CYCGRG 3 cut(s) 159, 1029, 1683
AvaII GGWCC 4 cut(s) 67, 156, 380, 2002
AvrII CCTAGG 1 cut(s) 1246
BanII GRGCYC 1 cut(s) 350
BauI CACGAG 1 cut(s) 151
BbsI GAAGAC 2 cut(s) 213, 492
Bbv12I GWGCWC 1 cut(s) 350
BbvI GCAGC 6 cut(s) 523, 1515, 1879, 1947, 1974, 2128
BccI CCATC 8 cut(s) 155, 412, 544, 819, 899, 1297, 1868, 1945
BceAI ACGGC 6 cut(s) 133, 283, 304, 614, 1560, 2139
BclI TGATCA 1 cut(s) 1015
BcnI CCSGG 6 cut(s) 6, 36, 160, 161, 1030, 1031
BcoDI GTCTC 5 cut(s) 258, 824, 845, 1823, 2028
BfaI CTAG 5 cut(s) 1175, 1209, 1247, 1271, 2015
BfmI CTRYAG 5 cut(s) 332, 991, 1361, 1809, 1905
BfoI RGCGCY 1 cut(s) 1954
BfrI CTTAAG 2 cut(s) 1556, 1859
BglI GCCNNNNNGGC 1 cut(s) 2005
BisI GCNGC 7 cut(s) 317, 537, 1529, 1893, 1961, 1988, 2142
BlnI CCTAGG 1 cut(s) 1246
BlpI GCTNAGC 2 cut(s) 1713, 2070
BlsI GCNGC 7 cut(s) 318, 538, 1530, 1894, 1962, 1989, 2143
Bme1390I CCNGG 6 cut(s) 6, 36, 160, 161, 1030, 1031
Bme18I GGWCC 4 cut(s) 67, 156, 380, 2002
BmeT110I CYCGRG 3 cut(s) 159, 1029, 1683
BmgT120I GGNCC 5 cut(s) 67, 156, 380, 1295, 2002
BmiI GGNNCC 5 cut(s) 49, 69, 158, 381, 519
BmrFI CCNGG 6 cut(s) 6, 36, 160, 161, 1030, 1031
BmrI ACTGGG 1 cut(s) 1344
BmsI GCATC 3 cut(s) 271, 867, 1879
BmuI ACTGGG 1 cut(s) 1344
BpiI GAAGAC 2 cut(s) 213, 492
BpmI CTGGAG 1 cut(s) 1680
Bpu1102I GCTNAGC 2 cut(s) 1713, 2070
Bpu14I TTCGAA 1 cut(s) 662
BpuEI CTTGAG 2 cut(s) 1267, 1410
BpuMI CCSGG 6 cut(s) 6, 36, 160, 161, 1030, 1031
BsaHI GRCGYC 2 cut(s) 9, 1006
BsaI GGTCTC 1 cut(s) 1823
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 200, 496, 1035
Bse118I RCCGGY 1 cut(s) 2004
Bse1I ACTGG 5 cut(s) 293, 476, 1007, 1339, 2000
Bse3DI GCAATG 1 cut(s) 1772
BseGI GGATG 3 cut(s) 226, 1308, 1441
BseLI CCNNNNNNNGG 4 cut(s) 153, 200, 496, 1035
BseMI GCAATG 1 cut(s) 1772
BseMII CTCAG 2 cut(s) 1727, 2039
BseNI ACTGG 5 cut(s) 293, 476, 1007, 1339, 2000
BseRI GAGGAG 2 cut(s) 358, 530
BseX3I CGGCCG 1 cut(s) 2152
BseXI GCAGC 6 cut(s) 523, 1515, 1879, 1947, 1974, 2128
BseYI CCCAGC 2 cut(s) 1622, 1947
BsgI GTGCAG 1 cut(s) 1814
Bsh1236I CGCG 1 cut(s) 1374
Bsh1285I CGRYCG 2 cut(s) 135, 2155
BshFI GGCC 5 cut(s) 120, 1297, 1999, 2008, 2154
BsiEI CGRYCG 2 cut(s) 135, 2155
BsiHKAI GWGCWC 1 cut(s) 350
BsiHKCI CYCGRG 3 cut(s) 159, 1029, 1683
BslFI GGGAC 3 cut(s) 53, 142, 1840
BslI CCNNNNNNNGG 4 cut(s) 153, 200, 496, 1035
BsmAI GTCTC 5 cut(s) 258, 824, 845, 1823, 2028
BsmBI CGTCTC 1 cut(s) 258
BsmFI GGGAC 3 cut(s) 53, 142, 1840
BsmI GAATGC 2 cut(s) 926, 1283
BsnI GGCC 5 cut(s) 120, 1297, 1999, 2008, 2154
Bso31I GGTCTC 1 cut(s) 1823
BsoBI CYCGRG 3 cut(s) 159, 1029, 1683
Bsp119I TTCGAA 1 cut(s) 662
Bsp1286I GDGCHC 1 cut(s) 350
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 8 cut(s) 84, 132, 297, 480, 619, 715, 797, 1015
Bsp1720I GCTNAGC 2 cut(s) 1713, 2070
Bsp19I CCATGG 3 cut(s) 584, 1216, 2064
BspACI CCGC 8 cut(s) 60, 194, 231, 292, 317, 617, 787, 2108
BspANI GGCC 5 cut(s) 120, 1297, 1999, 2008, 2154
BspCNI CTCAG 2 cut(s) 1726, 2038
BspFNI CGCG 1 cut(s) 1374
BspLI GGNNCC 5 cut(s) 49, 69, 158, 381, 519
BspMAI CTGCAG 1 cut(s) 995
BspPI GGATC 5 cut(s) 79, 305, 627, 710, 805
BspT104I TTCGAA 1 cut(s) 662
BspTI CTTAAG 2 cut(s) 1556, 1859
BspTNI GGTCTC 1 cut(s) 1823
BsrDI GCAATG 1 cut(s) 1772
BsrFI RCCGGY 1 cut(s) 2004
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 5 cut(s) 293, 476, 1007, 1339, 2000
BssAI RCCGGY 1 cut(s) 2004
BssMI GATC 8 cut(s) 84, 132, 297, 480, 619, 715, 797, 1015
BssNI GRCGYC 2 cut(s) 9, 1006
BssSI CACGAG 1 cut(s) 151
BssT1I CCWWGG 7 cut(s) 584, 1216, 1246, 1298, 1803, 2064, 2163
Bst2BI CACGAG 1 cut(s) 151
Bst4CI ACNGT 7 cut(s) 308, 655, 856, 1022, 1150, 1597, 2130
Bst6I CTCTTC 1 cut(s) 1971
BstACI GRCGYC 2 cut(s) 9, 1006
BstAFI CTTAAG 2 cut(s) 1556, 1859
BstAUI TGTACA 1 cut(s) 390
BstBI TTCGAA 1 cut(s) 662
BstC8I GCNNGC 8 cut(s) 139, 358, 615, 887, 1166, 1190, 1902, 2112
BstDEI CTNAG 6 cut(s) 254, 459, 1700, 1713, 2025, 2070
BstDSI CCRYGG 4 cut(s) 115, 584, 1216, 2064
BstEII GGTNACC 1 cut(s) 588
BstF5I GGATG 3 cut(s) 226, 1308, 1441
BstFNI CGCG 1 cut(s) 1374
BstH2I RGCGCY 1 cut(s) 1954
BstHHI GCGC 3 cut(s) 41, 973, 1953
BstKTI GATC 8 cut(s) 87, 135, 300, 483, 622, 718, 800, 1018
BstMAI GTCTC 5 cut(s) 258, 824, 845, 1823, 2028
BstMBI GATC 8 cut(s) 84, 132, 297, 480, 619, 715, 797, 1015
BstMCI CGRYCG 2 cut(s) 135, 2155
BstNSI RCATGY 3 cut(s) 889, 1168, 1192
BstPI GGTNACC 1 cut(s) 588
BstSCI CCNGG 6 cut(s) 4, 34, 158, 159, 1028, 1029
BstSFI CTRYAG 5 cut(s) 332, 991, 1361, 1809, 1905
BstUI CGCG 1 cut(s) 1374
BstV1I GCAGC 6 cut(s) 523, 1515, 1879, 1947, 1974, 2128
BstV2I GAAGAC 2 cut(s) 213, 492
BstX2I RGATCY 2 cut(s) 84, 797
BstXI CCANNNNNNTGG 2 cut(s) 818, 1452
BstYI RGATCY 2 cut(s) 84, 797
BstZI CGGCCG 1 cut(s) 2152
BsuRI GGCC 5 cut(s) 120, 1297, 1999, 2008, 2154
BtgI CCRYGG 4 cut(s) 115, 584, 1216, 2064
BtgZI GCGATG 2 cut(s) 294, 1356
BtsCI GGATG 3 cut(s) 226, 1308, 1441
BtsI GCAGTG 1 cut(s) 1000
BtsIMutI CAGTG 7 cut(s) 483, 1000, 1016, 1071, 1155, 1332, 1593
Cac8I GCNNGC 8 cut(s) 139, 358, 615, 887, 1166, 1190, 1902, 2112
CfoI GCGC 3 cut(s) 41, 973, 1953
Cfr10I RCCGGY 1 cut(s) 2004
Cfr13I GGNCC 5 cut(s) 67, 156, 380, 1295, 2002
Cfr9I CCCGGG 2 cut(s) 159, 1029
CpoI CGGWCCG 1 cut(s) 2002
CseI GACGC 2 cut(s) 878, 995
Csp6I GTAC 5 cut(s) 103, 391, 1000, 1630, 2126
CspI CGGWCCG 1 cut(s) 2002
CviQI GTAC 5 cut(s) 103, 391, 1000, 1630, 2126
DdeI CTNAG 6 cut(s) 254, 459, 1700, 1713, 2025, 2070
DpnI GATC 8 cut(s) 86, 134, 299, 482, 621, 717, 799, 1017
DpnII GATC 8 cut(s) 84, 132, 297, 480, 619, 715, 797, 1015
DraI TTTAAA 1 cut(s) 531
EaeI YGGCCR 2 cut(s) 1997, 2152
EagI CGGCCG 1 cut(s) 2152
Eam1104I CTCTTC 1 cut(s) 1971
EarI CTCTTC 1 cut(s) 1971
EciI GGCGGA 3 cut(s) 183, 307, 632
Ecl136II GAGCTC 1 cut(s) 348
EclXI CGGCCG 1 cut(s) 2152
Eco130I CCWWGG 7 cut(s) 584, 1216, 1246, 1298, 1803, 2064, 2163
Eco24I GRGCYC 1 cut(s) 350
Eco31I GGTCTC 1 cut(s) 1823
Eco32I GATATC 2 cut(s) 1746, 1920
Eco47I GGWCC 4 cut(s) 67, 156, 380, 2002
Eco47III AGCGCT 1 cut(s) 1952
Eco52I CGGCCG 1 cut(s) 2152
Eco53kI GAGCTC 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 915
Eco88I CYCGRG 3 cut(s) 159, 1029, 1683
Eco91I GGTNACC 1 cut(s) 588
EcoICRI GAGCTC 1 cut(s) 348
EcoO65I GGTNACC 1 cut(s) 588
EcoRV GATATC 2 cut(s) 1746, 1920
EcoT14I CCWWGG 7 cut(s) 584, 1216, 1246, 1298, 1803, 2064, 2163
EcoT22I ATGCAT 1 cut(s) 1170
EcoT38I GRGCYC 1 cut(s) 350
ErhI CCWWGG 7 cut(s) 584, 1216, 1246, 1298, 1803, 2064, 2163
Esp3I CGTCTC 1 cut(s) 258
FalI AAGNNNNNCTT 4 cut(s) 1338, 1370, 1683, 1715
FaqI GGGAC 3 cut(s) 53, 142, 1840
FauI CCCGC 1 cut(s) 224
FbaI TGATCA 1 cut(s) 1015
FblI GTMKAC 1 cut(s) 631
Fnu4HI GCNGC 7 cut(s) 317, 537, 1529, 1893, 1961, 1988, 2142
FokI GGATG 3 cut(s) 233, 1315, 1428
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 7 cut(s) 317, 537, 1529, 1893, 1961, 1988, 2142
FspBI CTAG 5 cut(s) 1175, 1209, 1247, 1271, 2015
GlaI GCGC 3 cut(s) 40, 972, 1952
GluI GCNGC 7 cut(s) 317, 537, 1529, 1893, 1961, 1988, 2142
GsaI CCCAGC 2 cut(s) 1626, 1951
GsuI CTGGAG 1 cut(s) 1680
HaeII RGCGCY 1 cut(s) 1954
HaeIII GGCC 5 cut(s) 120, 1297, 1999, 2008, 2154
HgaI GACGC 2 cut(s) 878, 995
HhaI GCGC 3 cut(s) 41, 973, 1953
Hin1I GRCGYC 2 cut(s) 9, 1006
Hin6I GCGC 3 cut(s) 39, 971, 1951
HinP1I GCGC 3 cut(s) 39, 971, 1951
HincII GTYRAC 1 cut(s) 1329
HindII GTYRAC 1 cut(s) 1329
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 8 cut(s) 20, 209, 1242, 1513, 1727, 1799, 1910, 1976
HphI GGTGA 5 cut(s) 104, 259, 787, 929, 1010
Hpy166II GTNNAC 4 cut(s) 103, 632, 1329, 1630
Hpy188I TCNGA 6 cut(s) 132, 214, 1139, 1750, 1798, 2028
Hpy188III TCNNGA 6 cut(s) 623, 893, 1157, 1284, 1820, 2081
Hpy8I GTNNAC 4 cut(s) 103, 632, 1329, 1630
Hpy99I CGWCG 3 cut(s) 14, 101, 388
HpyAV CCTTC 3 cut(s) 207, 361, 1766
HpyCH4III ACNGT 7 cut(s) 308, 655, 856, 1022, 1150, 1597, 2130
HpyCH4IV ACGT 2 cut(s) 826, 1089
HpyF3I CTNAG 6 cut(s) 254, 459, 1700, 1713, 2025, 2070
HpySE526I ACGT 2 cut(s) 826, 1089
Hsp92I GRCGYC 2 cut(s) 9, 1006
HspAI GCGC 3 cut(s) 39, 971, 1951
Ksp22I TGATCA 1 cut(s) 1015
Kzo9I GATC 8 cut(s) 84, 132, 297, 480, 619, 715, 797, 1015
LmnI GCTCC 6 cut(s) 53, 345, 517, 1338, 1468, 2079
Lsp1109I GCAGC 6 cut(s) 523, 1515, 1879, 1947, 1974, 2128
LweI GCATC 3 cut(s) 271, 867, 1879
MaeI CTAG 5 cut(s) 1175, 1209, 1247, 1271, 2015
MaeII ACGT 2 cut(s) 826, 1089
MaeIII GTNAC 5 cut(s) 588, 696, 789, 1090, 1437
MalI GATC 8 cut(s) 86, 134, 299, 482, 621, 717, 799, 1017
MboI GATC 8 cut(s) 84, 132, 297, 480, 619, 715, 797, 1015
MboII GAAGA 8 cut(s) 218, 497, 914, 1226, 1349, 1379, 1627, 1958
MfeI CAATTG 1 cut(s) 1718
MflI RGATCY 2 cut(s) 84, 797
MhlI GDGCHC 1 cut(s) 350
MlyI GAGTC 3 cut(s) 14, 203, 1970
MmeI TCCRAC 1 cut(s) 1714
Mph1103I ATGCAT 1 cut(s) 1170
MroXI GAANNNNTTC 1 cut(s) 1356
MseI TTAA 7 cut(s) 503, 530, 1196, 1557, 1860, 1982, 1992
MslI CAYNNNNRTG 1 cut(s) 62
MspCI CTTAAG 2 cut(s) 1556, 1859
MspR9I CCNGG 6 cut(s) 6, 36, 160, 161, 1030, 1031
MunI CAATTG 1 cut(s) 1718
Mva1269I GAATGC 2 cut(s) 926, 1283
MvnI CGCG 1 cut(s) 1374
NciI CCSGG 6 cut(s) 6, 36, 160, 161, 1030, 1031
NcoI CCATGG 3 cut(s) 584, 1216, 2064
NdeII GATC 8 cut(s) 84, 132, 297, 480, 619, 715, 797, 1015
NlaIV GGNNCC 5 cut(s) 49, 69, 158, 381, 519
NmeAIII GCCGAG 2 cut(s) 1876, 2130
NmuCI GTSAC 1 cut(s) 1437
NsiI ATGCAT 1 cut(s) 1170
NspI RCATGY 3 cut(s) 889, 1168, 1192
NspV TTCGAA 1 cut(s) 662
PaeI GCATGC 3 cut(s) 889, 1168, 1192
PctI GAATGC 2 cut(s) 926, 1283
PdmI GAANNNNTTC 1 cut(s) 1356
PfeI GAWTC 5 cut(s) 1242, 1513, 1727, 1799, 1910
PflMI CCANNNNNTGG 1 cut(s) 153
PkrI GCNGC 7 cut(s) 318, 538, 1530, 1894, 1962, 1989, 2143
Ple19I CGATCG 1 cut(s) 135
PleI GAGTC 3 cut(s) 14, 203, 1970
PpsI GAGTC 3 cut(s) 14, 203, 1970
Psp124BI GAGCTC 1 cut(s) 350
PspEI GGTNACC 1 cut(s) 588
PspFI CCCAGC 2 cut(s) 1622, 1947
PspN4I GGNNCC 5 cut(s) 49, 69, 158, 381, 519
PspPI GGNCC 5 cut(s) 67, 156, 380, 1295, 2002
PsrI GAACNNNNNNTAC 2 cut(s) 1344, 1376
PstI CTGCAG 1 cut(s) 995
PsuI RGATCY 2 cut(s) 84, 797
PvuI CGATCG 1 cut(s) 135
RsaI GTAC 5 cut(s) 104, 392, 1001, 1631, 2127
RsaNI GTAC 5 cut(s) 103, 391, 1000, 1630, 2126
RseI CAYNNNNRTG 1 cut(s) 62
Rsr2I CGGWCCG 1 cut(s) 2002
RsrII CGGWCCG 1 cut(s) 2002
SacI GAGCTC 1 cut(s) 350
SaqAI TTAA 7 cut(s) 503, 530, 1196, 1557, 1860, 1982, 1992
SatI GCNGC 7 cut(s) 317, 537, 1529, 1893, 1961, 1988, 2142
Sau3AI GATC 8 cut(s) 84, 132, 297, 480, 619, 715, 797, 1015
Sau96I GGNCC 5 cut(s) 67, 156, 380, 1295, 2002
SchI GAGTC 3 cut(s) 14, 203, 1970
ScrFI CCNGG 6 cut(s) 6, 36, 160, 161, 1030, 1031
SduI GDGCHC 1 cut(s) 350
SfaNI GCATC 3 cut(s) 271, 867, 1879
SfcI CTRYAG 5 cut(s) 332, 991, 1361, 1809, 1905
SfiI GGCCNNNNNGGCC 1 cut(s) 2005
SfuI TTCGAA 1 cut(s) 662
SinI GGWCC 4 cut(s) 67, 156, 380, 2002
SmaI CCCGGG 2 cut(s) 161, 1031
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 4 cut(s) 1282, 1425, 1556, 1859
SmoI CTYRAG 4 cut(s) 1282, 1425, 1556, 1859
SphI GCATGC 3 cut(s) 889, 1168, 1192
SsiI CCGC 8 cut(s) 60, 194, 231, 292, 317, 617, 787, 2108
SspI AATATT 1 cut(s) 725
SspMI CTAG 5 cut(s) 1175, 1209, 1247, 1271, 2015
SstI GAGCTC 1 cut(s) 350
StyD4I CCNGG 6 cut(s) 4, 34, 158, 159, 1028, 1029
StyI CCWWGG 7 cut(s) 584, 1216, 1246, 1298, 1803, 2064, 2163
TaaI ACNGT 7 cut(s) 308, 655, 856, 1022, 1150, 1597, 2130
TaiI ACGT 2 cut(s) 829, 1092
TaqI TCGA 7 cut(s) 365, 483, 662, 1411, 1742, 1821, 2091
TatI WGTACW 2 cut(s) 102, 390
TauI GCSGC 1 cut(s) 319
TfiI GAWTC 5 cut(s) 1242, 1513, 1727, 1799, 1910
Tru1I TTAA 7 cut(s) 503, 530, 1196, 1557, 1860, 1982, 1992
Tru9I TTAA 7 cut(s) 503, 530, 1196, 1557, 1860, 1982, 1992
TscAI CASTG 7 cut(s) 483, 1000, 1016, 1078, 1155, 1339, 1600
TseFI GTSAC 1 cut(s) 1437
TseI GCWGC 6 cut(s) 536, 1528, 1892, 1960, 1987, 2141
Tsp45I GTSAC 1 cut(s) 1437
TspDTI ATGAA 9 cut(s) 237, 699, 1359, 1560, 1599, 1628, 1704, 1767, 1943
TspGWI ACGGA 4 cut(s) 179, 372, 850, 2066
TspMI CCCGGG 2 cut(s) 159, 1029
TspRI CASTG 7 cut(s) 483, 1000, 1016, 1078, 1155, 1339, 1600
Van91I CCANNNNNTGG 1 cut(s) 153
Vha464I CTTAAG 2 cut(s) 1556, 1859
VpaK11BI GGWCC 4 cut(s) 67, 156, 380, 2002
XapI RAATTY 1 cut(s) 439
XceI RCATGY 3 cut(s) 889, 1168, 1192
XcmI CCANNNNNNNNNTGG 1 cut(s) 1640
XmaI CCCGGG 2 cut(s) 159, 1029
XmaJI CCTAGG 1 cut(s) 1246
XmiI GTMKAC 1 cut(s) 631
XmnI GAANNNNTTC 1 cut(s) 1356
XspI CTAG 5 cut(s) 1175, 1209, 1247, 1271, 2015
Zsp2I ATGCAT 1 cut(s) 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.