Rroxscaffold_7G00161900

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015152
Physical Location & Seq
Forward (+)
4539205 .. 4546216
7012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161900.1

Sequence Viewer

Length: 2148 bp
ATGCCCGGCGTCGCATCAAACTCCGGCGAACGTTCTCTGGTCCCCTACTCGCCGGAGCTCCCGCAGCCCGTCGTACACTCCATTCACCACGGCCTCAAGCCTCCGATCGCTCGCCTCTCCATCTCTTGGTCCCGCGGCAATACGCTGCGCGTGTCGGTTCTCCGTCAGGCGTCCGATGAAGACTCCGACGACGGCGAGGTCGGCGGGAAAGTAGTGGAGGTGAAGCTCAGCAATGGCGACGGCGAGAATAGCGACGCAACGTGGCGGAGGATCGCCTACGGCTCCGTTACCCCGTTTGCTCATCTCCAGAGCCGCCGGAGCACCATCTCCAACTTATCGAACATGTCACTCAGTCCATCGCCGTATAGCATCGATTGGTGGGAGTATGTGATGGAGTACAGCAAGGACATAAATTCACTCCTTGGTAGTCTCGATTCGGGTCCTGACCCGGTGATTGACGACCCGAAGATGGTTTTAAAGAGAACTGAGGAGCCTACCTCGATAAAAGCTGCTTGGGAGCTGATGGAGATATTTTATGCGGACAAGCAGTCTCAGCCCTGGCAACTGGAACGGCTTGTTGATTGGTTGGCTGATTATGATAGCTTGCTCTCTAGTACTCACCCAACAGTCCATTCTAAACTTGTGGATTTCCAAAATGAACTTTCCAGCTTACAGGTTATTGAGGATGATCCTAAATATTGGGATGTGTTATCATCAGCACTTGCAGTTGGCTGGATTGATATTGTGGTGAAAATGTTACGCTTACATGGATCTTATCAACTCCATCAGCTTGGCAACCGTGAGACAGAAAATGGACTTGTAGAGGCAGTTGCTGTTCTTATTTCAAAGAAGCCACGCATGCGTCCAGGAGTAGAAGATGGAAAGTTGGGTGAATGCTTTAAAGCAAAGCCTGATTTTATCAAGGTATGTATAAAATTGAGAGCAAAAATTACGAAGCTAGACTGCAGTGGATTCTGGCTTCAGTGTGATCACCATCAAACCCGGGAGGGATTGAAAAATATGATACAGGTCATGCTTGGAAACATTGACAGTCTCTGCAATGAAACTTGCCACTGGATAGAGCTGTTCATTTCTCACTTTCTATACGTCAGGCCATTAACAGTGGGTCTCGAAAGCATGTATAGCCTAGCCCAGAAATGCTTACAATTGAAACCAATGTTGGGTGCCCATAGGTTGATAGATATTATTCTTGGAATCCTTGGGGAAAATACTGAGGTTGTCTTGGCGGAATGCTCTAGAGCATTTGGGCCTTGGATGGTTGCCCATGCCATTGAGTTGTTGACTACTGGGAGTGATCACGCAGAAAGTCTTTTACATGAAGAGCGCTATAACTTGGGTGGAATTAGTATAGCAGAACTACATCGGCTTGTCTACGCTCAGGTTTTATCATCACATGCATTGACTTGGCAAATTGCTCCAATCTATTTGTCATCGTGCATGAAGCAGGGAATGGGTTTGTTAGAGATTCTATTGTCTAAGCTGCCTATTGAACATAATGAAACACTGCTTAAGAATATAGAGACTTGTCGTCTTTACGAACTTGATACTGTTAGTTCAAACGTTATGAAGATTGCAGGGGTTTACCATTGGAAGCATGGTAGGAAAGGTTGTGGAGTTTTCTGGCTTCAGCAAGCCCGAGATGAAGTTCGTCTTACCAGGATTGCTCAACATTTGTTTGATTCTGTTGGAAAGTCGATCTCCGATGAGAGTTTCAAGCAATGGGAAGGCTTGATTGAATTGTTGGGGTCTGAGTCCAAGACTACTGGGGGTCTAGACTTCCTGCACAAGTATAGGGATTTCAAGAGGTCCCTCAAGCAGGTTCGTGATGGAAAAACTACTGATGCTGCCCATCAAGCTGTAGAATCTCTGATATCGCTCATGAAAAACCCATCTACTCCTCAGCGCTTCTGGCTGCCTCTTCTTCATGACTCACTGAAGCTGCTAAACTGGCAGGAGCGTCCTCTGCTAAATGTCTCGCAGACAGACCTCTTGCTCAATAAACTGCAAGAGTTGTCCATGGCTAAGCTCCGTCCAGACTTTATTGAAGCAGACTTGCCATCAGAGGCCCTGAGTTGTGTGAGGTTGGCTCTTGCATCAAATCTTGGACGTGCCATCTTGGAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nucleopor_Nup85

Protein Analysis

715

Amino Acids

80.49

Weight (kDa)

6.0

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleopor_Nup85 PF07575 81 - 677 5.5e-135 Nup85 Nucleoporin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32910
fragaria_vesca FvH4_2g35520
malus_domestica MD15G1093200.v1.1
prunus_persica Prupe.1G448000_v2.0.a1
pyrus_communis pycom15g08600
rosa_chinensis RchiOBHm_Chr6g0306261
rosa_laevigata RLG00000010809
rosa_multiflora Rmu_sc0017002.1_g000002 Rmu_sc0037804.1_g000002
rosa_roxburghii Rroxscaffold_7G00161900
rosa_rugosa Rorug06G0348400
rosa_samantha Rh6AG460900 Rh6BG440100 Rh6CG475200 Rh6DG461500
rosa_wichuraiana Rw6G040160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
Acc36I ACCTGC 1 cut(s) 1828
AccB1I GGYRCC 1 cut(s) 1184
AccB7I CCANNNNNTGG 1 cut(s) 126
AccI GTMKAC 1 cut(s) 1392
AccII CGCG 2 cut(s) 135, 150
AciI CCGC 8 cut(s) 62, 133, 135, 204, 265, 313, 539, 1247
AclI AACGTT 2 cut(s) 31, 1581
AclWI GGATC 3 cut(s) 278, 683, 778
AcsI RAATTY 1 cut(s) 412
AcuI CTGAAG 3 cut(s) 965, 1631, 1976
AcyI GRCGYC 2 cut(s) 9, 170
AfaI GTAC 3 cut(s) 75, 398, 616
AfeI AGCGCT 2 cut(s) 1346, 1925
AfiI CCNNNNNNNGG 4 cut(s) 126, 469, 1181, 1837
AflII CTTAAG 1 cut(s) 1529
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 9 cut(s) 846, 1015, 1171, 1511, 1578, 1735, 1757, 1822, 2066
AhdI GACNNNNNGTC 2 cut(s) 547, 1548
AjiI CACGTC 1 cut(s) 2129
AjnI CCWGG 3 cut(s) 557, 865, 1676
AjuI GAANNNNNNNTTGG 4 cut(s) 616, 648, 1163, 1195
Alw21I GWGCWC 2 cut(s) 60, 323
Alw26I GTCTC 7 cut(s) 434, 555, 797, 1058, 1133, 1535, 1999
AlwI GGATC 3 cut(s) 278, 683, 778
AlwNI CAGNNNCTG 2 cut(s) 833, 1056
Ama87I CYCGRG 2 cut(s) 1002, 1656
Aor51HI AGCGCT 2 cut(s) 1346, 1925
AoxI GGCC 4 cut(s) 91, 1112, 1268, 2085
ApeKI GCWGC 7 cut(s) 64, 145, 509, 1501, 1865, 1933, 1960
ApoI RAATTY 1 cut(s) 412
AspLEI GCGC 3 cut(s) 150, 1347, 1926
AspS9I GGNCC 6 cut(s) 40, 129, 440, 1268, 1827, 2086
AsuC2I CCSGG 4 cut(s) 6, 449, 1003, 1004
AsuHPI GGTGA 7 cut(s) 77, 232, 463, 611, 760, 902, 983
AvaI CYCGRG 2 cut(s) 1002, 1656
AvaII GGWCC 4 cut(s) 40, 129, 440, 1827
BaeGI GKGCMC 1 cut(s) 1189
BanI GGYRCC 1 cut(s) 1184
BanII GRGCYC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 2 cut(s) 60, 323
BbvCI CCTCAGC 1 cut(s) 1920
BbvI GCAGC 7 cut(s) 76, 132, 496, 1488, 1852, 1920, 1947
BceAI ACGGC 6 cut(s) 106, 208, 256, 295, 346, 587
BciT130I CCWGG 3 cut(s) 559, 867, 1678
BclI TGATCA 2 cut(s) 988, 1315
BcnI CCSGG 4 cut(s) 6, 449, 1003, 1004
BcoDI GTCTC 7 cut(s) 434, 555, 797, 1058, 1133, 1535, 1999
BfaI CTAG 5 cut(s) 612, 959, 1148, 1257, 1793
BfmI CTRYAG 2 cut(s) 964, 1878
BfoI RGCGCY 2 cut(s) 1348, 1927
BfrI CTTAAG 1 cut(s) 1529
BfuAI ACCTGC 1 cut(s) 1828
BisI GCNGC 9 cut(s) 65, 136, 146, 313, 510, 1502, 1866, 1934, 1961
BlpI GCTNAGC 2 cut(s) 227, 2043
BlsI GCNGC 9 cut(s) 66, 137, 147, 314, 511, 1503, 1867, 1935, 1962
BmcAI AGTACT 1 cut(s) 616
Bme1390I CCNGG 7 cut(s) 6, 449, 559, 867, 1003, 1004, 1678
Bme18I GGWCC 4 cut(s) 40, 129, 440, 1827
BmeRI GACNNNNNGTC 2 cut(s) 547, 1548
BmeT110I CYCGRG 2 cut(s) 1002, 1656
BmgBI CACGTC 1 cut(s) 2129
BmgT120I GGNCC 6 cut(s) 40, 129, 440, 1268, 1827, 2086
BmiI GGNNCC 7 cut(s) 42, 131, 283, 441, 492, 1186, 1829
BmrFI CCNGG 7 cut(s) 6, 449, 559, 867, 1003, 1004, 1678
BmrI ACTGGG 2 cut(s) 1317, 1794
BmsI GCATC 4 cut(s) 23, 378, 1852, 2123
BmuI ACTGGG 2 cut(s) 1317, 1794
BpiI GAAGAC 1 cut(s) 186
BplI GAGNNNNNCTC 4 cut(s) 482, 514, 2092, 2124
BpmI CTGGAG 1 cut(s) 290
Bpu10I CCTNAGC 2 cut(s) 1398, 1920
Bpu1102I GCTNAGC 2 cut(s) 227, 2043
BpuEI CTTGAG 2 cut(s) 80, 1817
BpuMI CCSGG 4 cut(s) 6, 449, 1003, 1004
Bsa29I ATCGAT 1 cut(s) 372
BsaBI GATNNNNATC 1 cut(s) 993
BsaHI GRCGYC 2 cut(s) 9, 170
BsaI GGTCTC 1 cut(s) 1133
BsaJI CCNNGG 8 cut(s) 88, 133, 421, 557, 1002, 1219, 1271, 2037
Bsc4I CCNNNNNNNGG 4 cut(s) 126, 469, 1181, 1837
Bse1I ACTGG 5 cut(s) 570, 1079, 1312, 1789, 1973
Bse3DI GCAATG 3 cut(s) 238, 1066, 1745
Bse8I GATNNNNATC 1 cut(s) 993
BseBI CCWGG 3 cut(s) 559, 867, 1678
BseCI ATCGAT 1 cut(s) 372
BseDI CCNNGG 8 cut(s) 88, 133, 421, 557, 1002, 1219, 1271, 2037
BseGI GGATG 3 cut(s) 691, 709, 1281
BseJI GATNNNNATC 1 cut(s) 993
BseLI CCNNNNNNNGG 4 cut(s) 126, 469, 1181, 1837
BseMI GCAATG 3 cut(s) 238, 1066, 1745
BseMII CTCAG 9 cut(s) 241, 364, 477, 566, 1224, 1412, 1761, 1934, 2081
BseNI ACTGG 5 cut(s) 570, 1079, 1312, 1789, 1973
BseRI GAGGAG 2 cut(s) 503, 1908
BseSI GKGCMC 1 cut(s) 1189
BseXI GCAGC 7 cut(s) 76, 132, 496, 1488, 1852, 1920, 1947
BsgI GTGCAG 1 cut(s) 1787
Bsh1236I CGCG 2 cut(s) 135, 150
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 4 cut(s) 93, 1114, 1270, 2087
BshNI GGYRCC 1 cut(s) 1184
BshVI ATCGAT 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 2 cut(s) 60, 323
BsiHKCI CYCGRG 2 cut(s) 1002, 1656
BsiSI CCGG 6 cut(s) 6, 24, 53, 316, 449, 1003
BslFI GGGAC 3 cut(s) 26, 115, 1813
BslI CCNNNNNNNGG 4 cut(s) 126, 469, 1181, 1837
BsmAI GTCTC 7 cut(s) 434, 555, 797, 1058, 1133, 1535, 1999
BsmFI GGGAC 3 cut(s) 26, 115, 1813
BsmI GAATGC 2 cut(s) 899, 1256
BsnI GGCC 4 cut(s) 93, 1114, 1270, 2087
Bso31I GGTCTC 1 cut(s) 1133
BsoBI CYCGRG 2 cut(s) 1002, 1656
Bsp1286I GDGCHC 3 cut(s) 60, 323, 1189
Bsp143I GATC 7 cut(s) 105, 270, 688, 770, 988, 1315, 1716
Bsp1720I GCTNAGC 2 cut(s) 227, 2043
Bsp19I CCATGG 1 cut(s) 2037
BspACI CCGC 8 cut(s) 62, 133, 135, 204, 265, 313, 539, 1247
BspANI GGCC 4 cut(s) 93, 1114, 1270, 2087
BspCNI CTCAG 9 cut(s) 240, 363, 478, 565, 1225, 1411, 1762, 1933, 2082
BspDI ATCGAT 1 cut(s) 372
BspFNI CGCG 2 cut(s) 135, 150
BspHI TCATGA 2 cut(s) 1899, 1945
BspLI GGNNCC 7 cut(s) 42, 131, 283, 441, 492, 1186, 1829
BspMAI CTGCAG 1 cut(s) 968
BspMI ACCTGC 1 cut(s) 1828
BspPI GGATC 3 cut(s) 278, 683, 778
BspQI GCTCTTC 1 cut(s) 1335
BspT107I GGYRCC 1 cut(s) 1184
BspTI CTTAAG 1 cut(s) 1529
BspTNI GGTCTC 1 cut(s) 1133
BsrDI GCAATG 3 cut(s) 238, 1066, 1745
BsrI ACTGG 5 cut(s) 570, 1079, 1312, 1789, 1973
BssECI CCNNGG 8 cut(s) 88, 133, 421, 557, 1002, 1219, 1271, 2037
BssMI GATC 7 cut(s) 105, 270, 688, 770, 988, 1315, 1716
BssNI GRCGYC 2 cut(s) 9, 170
BssT1I CCWWGG 4 cut(s) 421, 1219, 1271, 2037
Bst2UI CCWGG 3 cut(s) 559, 867, 1678
Bst4CI ACNGT 5 cut(s) 628, 800, 1052, 1123, 1570
Bst6I CTCTTC 2 cut(s) 1335, 1944
BstACI GRCGYC 2 cut(s) 9, 170
BstAFI CTTAAG 1 cut(s) 1529
BstC8I GCNNGC 4 cut(s) 112, 605, 860, 1653
BstDSI CCRYGG 3 cut(s) 88, 133, 2037
BstENI CCTNNNNNAGG 1 cut(s) 1835
BstF5I GGATG 3 cut(s) 691, 709, 1281
BstFNI CGCG 2 cut(s) 135, 150
BstH2I RGCGCY 2 cut(s) 1348, 1927
BstHHI GCGC 3 cut(s) 150, 1347, 1926
BstKTI GATC 7 cut(s) 108, 273, 691, 773, 991, 1318, 1719
BstMAI GTCTC 7 cut(s) 434, 555, 797, 1058, 1133, 1535, 1999
BstMBI GATC 7 cut(s) 105, 270, 688, 770, 988, 1315, 1716
BstMCI CGRYCG 1 cut(s) 108
BstNI CCWGG 3 cut(s) 559, 867, 1678
BstNSI RCATGY 4 cut(s) 346, 862, 1141, 1418
BstSCI CCNGG 7 cut(s) 4, 447, 557, 865, 1001, 1002, 1676
BstSFI CTRYAG 2 cut(s) 964, 1878
BstSLI GKGCMC 1 cut(s) 1189
BstUI CGCG 2 cut(s) 135, 150
BstV1I GCAGC 7 cut(s) 76, 132, 496, 1488, 1852, 1920, 1947
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 770
BstXI CCANNNNNNTGG 1 cut(s) 791
BstYI RGATCY 1 cut(s) 770
Bsu15I ATCGAT 1 cut(s) 372
BsuRI GGCC 4 cut(s) 93, 1114, 1270, 2087
BsuTUI ATCGAT 1 cut(s) 372
BtgI CCRYGG 3 cut(s) 88, 133, 2037
BtgZI GCGATG 1 cut(s) 342
BtrI CACGTC 1 cut(s) 2129
BtsCI GGATG 3 cut(s) 691, 709, 1281
BtsI GCAGTG 2 cut(s) 973, 1523
BtsIMutI CAGTG 6 cut(s) 973, 989, 1072, 1128, 1523, 1952
BveI ACCTGC 1 cut(s) 1828
Cac8I GCNNGC 4 cut(s) 112, 605, 860, 1653
CaiI CAGNNNCTG 2 cut(s) 833, 1056
CciI TCATGA 2 cut(s) 1899, 1945
CfoI GCGC 3 cut(s) 150, 1347, 1926
Cfr13I GGNCC 6 cut(s) 40, 129, 440, 1268, 1827, 2086
Cfr42I CCGCGG 1 cut(s) 136
Cfr9I CCCGGG 1 cut(s) 1002
ClaI ATCGAT 1 cut(s) 372
CseI GACGC 4 cut(s) 159, 263, 851, 1967
Csp6I GTAC 3 cut(s) 74, 397, 615
CviQI GTAC 3 cut(s) 74, 397, 615
DpnI GATC 7 cut(s) 107, 272, 690, 772, 990, 1317, 1718
DpnII GATC 7 cut(s) 105, 270, 688, 770, 988, 1315, 1716
DraI TTTAAA 2 cut(s) 477, 901
DrdI GACNNNNNNGTC 1 cut(s) 197
DriI GACNNNNNGTC 2 cut(s) 547, 1548
DseDI GACNNNNNNGTC 1 cut(s) 197
Eam1104I CTCTTC 2 cut(s) 1335, 1944
Eam1105I GACNNNNNGTC 2 cut(s) 547, 1548
EarI CTCTTC 2 cut(s) 1335, 1944
EciI GGCGGA 2 cut(s) 280, 1262
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 4 cut(s) 421, 1219, 1271, 2037
Eco24I GRGCYC 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 1133
Eco32I GATATC 1 cut(s) 1893
Eco47I GGWCC 4 cut(s) 40, 129, 440, 1827
Eco47III AGCGCT 2 cut(s) 1346, 1925
Eco53kI GAGCTC 1 cut(s) 58
Eco57I CTGAAG 3 cut(s) 965, 1631, 1976
Eco88I CYCGRG 2 cut(s) 1002, 1656
EcoICRI GAGCTC 1 cut(s) 58
EcoNI CCTNNNNNAGG 1 cut(s) 1835
EcoO109I RGGNCCY 3 cut(s) 440, 1827, 2086
EcoRII CCWGG 3 cut(s) 557, 865, 1676
EcoRV GATATC 1 cut(s) 1893
EcoT14I CCWWGG 4 cut(s) 421, 1219, 1271, 2037
EcoT22I ATGCAT 1 cut(s) 1420
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 4 cut(s) 421, 1219, 1271, 2037
FalI AAGNNNNNCTT 2 cut(s) 1656, 1688
FaqI GGGAC 3 cut(s) 26, 115, 1813
FauI CCCGC 3 cut(s) 69, 140, 197
FbaI TGATCA 2 cut(s) 988, 1315
FblI GTMKAC 1 cut(s) 1392
Fnu4HI GCNGC 9 cut(s) 65, 136, 146, 313, 510, 1502, 1866, 1934, 1961
FokI GGATG 3 cut(s) 698, 716, 1288
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 9 cut(s) 65, 136, 146, 313, 510, 1502, 1866, 1934, 1961
FspBI CTAG 5 cut(s) 612, 959, 1148, 1257, 1793
GlaI GCGC 3 cut(s) 149, 1346, 1925
GluI GCNGC 9 cut(s) 65, 136, 146, 313, 510, 1502, 1866, 1934, 1961
GsuI CTGGAG 1 cut(s) 290
HaeII RGCGCY 2 cut(s) 1348, 1927
HaeIII GGCC 4 cut(s) 93, 1114, 1270, 2087
HapII CCGG 6 cut(s) 6, 24, 53, 316, 449, 1003
HgaI GACGC 4 cut(s) 159, 263, 851, 1967
HhaI GCGC 3 cut(s) 150, 1347, 1926
Hin1I GRCGYC 2 cut(s) 9, 170
Hin6I GCGC 3 cut(s) 148, 1345, 1924
HinP1I GCGC 3 cut(s) 148, 1345, 1924
HincII GTYRAC 1 cut(s) 1302
HindII GTYRAC 1 cut(s) 1302
HinfI GANTC 9 cut(s) 182, 434, 972, 1215, 1486, 1700, 1772, 1883, 1949
HpaII CCGG 6 cut(s) 6, 24, 53, 316, 449, 1003
HphI GGTGA 7 cut(s) 77, 232, 463, 611, 760, 902, 983
Hpy166II GTNNAC 4 cut(s) 76, 1302, 1393, 1603
Hpy188I TCNGA 7 cut(s) 105, 175, 187, 1723, 1771, 1890, 2083
Hpy8I GTNNAC 4 cut(s) 76, 1302, 1393, 1603
Hpy99I CGWCG 6 cut(s) 14, 74, 191, 194, 242, 257
HpyAV CCTTC 1 cut(s) 1739
HpyCH4III ACNGT 5 cut(s) 628, 800, 1052, 1123, 1570
HpyCH4IV ACGT 5 cut(s) 31, 260, 1107, 1581, 2128
HpyCH4V TGCA 9 cut(s) 725, 966, 1059, 1418, 1458, 1595, 1804, 2026, 2114
HpySE526I ACGT 5 cut(s) 31, 260, 1107, 1581, 2128
Hsp92I GRCGYC 2 cut(s) 9, 170
HspAI GCGC 3 cut(s) 148, 1345, 1924
Ksp22I TGATCA 2 cut(s) 988, 1315
KspI CCGCGG 1 cut(s) 136
Kzo9I GATC 7 cut(s) 105, 270, 688, 770, 988, 1315, 1716
LguI GCTCTTC 1 cut(s) 1335
LmnI GCTCC 9 cut(s) 55, 63, 287, 318, 490, 517, 1441, 1975, 2052
Lsp1109I GCAGC 7 cut(s) 76, 132, 496, 1488, 1852, 1920, 1947
LweI GCATC 4 cut(s) 23, 378, 1852, 2123
MaeI CTAG 5 cut(s) 612, 959, 1148, 1257, 1793
MaeII ACGT 5 cut(s) 31, 260, 1107, 1581, 2128
MaeIII GTNAC 3 cut(s) 286, 345, 756
MalI GATC 7 cut(s) 107, 272, 690, 772, 990, 1317, 1718
MboI GATC 7 cut(s) 105, 270, 688, 770, 988, 1315, 1716
MboII GAAGA 7 cut(s) 191, 478, 887, 1352, 1600, 1931, 1934
MfeI CAATTG 1 cut(s) 1166
MflI RGATCY 1 cut(s) 770
MhlI GDGCHC 3 cut(s) 60, 323, 1189
MluCI AATT 7 cut(s) 412, 935, 948, 1166, 1362, 1431, 1757
MlyI GAGTC 3 cut(s) 176, 1781, 1943
MmeI TCCRAC 3 cut(s) 210, 354, 1687
Mph1103I ATGCAT 1 cut(s) 1420
MseI TTAA 4 cut(s) 476, 900, 1118, 1530
MspA1I CMGCKG 1 cut(s) 135
MspCI CTTAAG 1 cut(s) 1529
MspI CCGG 6 cut(s) 6, 24, 53, 316, 449, 1003
MspR9I CCNGG 7 cut(s) 6, 449, 559, 867, 1003, 1004, 1678
MunI CAATTG 1 cut(s) 1166
Mva1269I GAATGC 2 cut(s) 899, 1256
MvaI CCWGG 3 cut(s) 559, 867, 1678
MvnI CGCG 2 cut(s) 135, 150
NciI CCSGG 4 cut(s) 6, 449, 1003, 1004
NcoI CCATGG 1 cut(s) 2037
NdeII GATC 7 cut(s) 105, 270, 688, 770, 988, 1315, 1716
NlaIV GGNNCC 7 cut(s) 42, 131, 283, 441, 492, 1186, 1829
NmuCI GTSAC 1 cut(s) 345
NsiI ATGCAT 1 cut(s) 1420
NspI RCATGY 4 cut(s) 346, 862, 1141, 1418
PaeI GCATGC 1 cut(s) 862
PagI TCATGA 2 cut(s) 1899, 1945
PciI ACATGT 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 1335
PctI GAATGC 2 cut(s) 899, 1256
PfeI GAWTC 6 cut(s) 434, 972, 1215, 1486, 1700, 1883
PflMI CCANNNNNTGG 1 cut(s) 126
PfoI TCCNGGA 1 cut(s) 865
PkrI GCNGC 9 cut(s) 66, 137, 147, 314, 511, 1503, 1867, 1935, 1962
Ple19I CGATCG 1 cut(s) 108
PleI GAGTC 3 cut(s) 176, 1780, 1943
PpsI GAGTC 3 cut(s) 176, 1780, 1943
PpuMI RGGWCCY 2 cut(s) 440, 1827
PscI ACATGT 1 cut(s) 342
Psp124BI GAGCTC 1 cut(s) 60
Psp1406I AACGTT 2 cut(s) 31, 1581
Psp5II RGGWCCY 2 cut(s) 440, 1827
Psp6I CCWGG 3 cut(s) 557, 865, 1676
PspGI CCWGG 3 cut(s) 557, 865, 1676
PspN4I GGNNCC 7 cut(s) 42, 131, 283, 441, 492, 1186, 1829
PspPI GGNCC 6 cut(s) 40, 129, 440, 1268, 1827, 2086
PspPPI RGGWCCY 2 cut(s) 440, 1827
PstI CTGCAG 1 cut(s) 968
PstNI CAGNNNCTG 2 cut(s) 833, 1056
PsuI RGATCY 1 cut(s) 770
PvuI CGATCG 1 cut(s) 108
RsaI GTAC 3 cut(s) 75, 398, 616
RsaNI GTAC 3 cut(s) 74, 397, 615
SacI GAGCTC 1 cut(s) 60
SacII CCGCGG 1 cut(s) 136
SapI GCTCTTC 1 cut(s) 1335
SaqAI TTAA 4 cut(s) 476, 900, 1118, 1530
SatI GCNGC 9 cut(s) 65, 136, 146, 313, 510, 1502, 1866, 1934, 1961
Sau3AI GATC 7 cut(s) 105, 270, 688, 770, 988, 1315, 1716
Sau96I GGNCC 6 cut(s) 40, 129, 440, 1268, 1827, 2086
ScaI AGTACT 1 cut(s) 616
SchI GAGTC 3 cut(s) 176, 1781, 1943
ScrFI CCNGG 7 cut(s) 6, 449, 559, 867, 1003, 1004, 1678
SduI GDGCHC 3 cut(s) 60, 323, 1189
SfaNI GCATC 4 cut(s) 23, 378, 1852, 2123
SfcI CTRYAG 2 cut(s) 964, 1878
Sfr303I CCGCGG 1 cut(s) 136
SgrBI CCGCGG 1 cut(s) 136
SinI GGWCC 4 cut(s) 40, 129, 440, 1827
SmaI CCCGGG 1 cut(s) 1004
SmlI CTYRAG 3 cut(s) 95, 1529, 1832
SmoI CTYRAG 3 cut(s) 95, 1529, 1832
SphI GCATGC 1 cut(s) 862
Sse9I AATT 7 cut(s) 412, 935, 948, 1166, 1362, 1431, 1757
SsiI CCGC 8 cut(s) 62, 133, 135, 204, 265, 313, 539, 1247
SspI AATATT 1 cut(s) 698
SspMI CTAG 5 cut(s) 612, 959, 1148, 1257, 1793
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 7 cut(s) 4, 447, 557, 865, 1001, 1002, 1676
StyI CCWWGG 4 cut(s) 421, 1219, 1271, 2037
TaaI ACNGT 5 cut(s) 628, 800, 1052, 1123, 1570
TaiI ACGT 5 cut(s) 34, 263, 1110, 1584, 2131
TaqI TCGA 6 cut(s) 338, 372, 432, 500, 1131, 1715
TasI AATT 7 cut(s) 412, 935, 948, 1166, 1362, 1431, 1757
TatI WGTACW 2 cut(s) 396, 614
TauI GCSGC 2 cut(s) 138, 315
TfiI GAWTC 6 cut(s) 434, 972, 1215, 1486, 1700, 1883
Tru1I TTAA 4 cut(s) 476, 900, 1118, 1530
Tru9I TTAA 4 cut(s) 476, 900, 1118, 1530
TscAI CASTG 6 cut(s) 973, 989, 1079, 1128, 1530, 1959
TseFI GTSAC 1 cut(s) 345
TseI GCWGC 7 cut(s) 64, 145, 509, 1501, 1865, 1933, 1960
Tsp45I GTSAC 1 cut(s) 345
TspGWI ACGGA 3 cut(s) 152, 274, 2039
TspMI CCCGGG 1 cut(s) 1002
TspRI CASTG 6 cut(s) 973, 989, 1079, 1128, 1530, 1959
Van91I CCANNNNNTGG 1 cut(s) 126
Vha464I CTTAAG 1 cut(s) 1529
VpaK11BI GGWCC 4 cut(s) 40, 129, 440, 1827
XagI CCTNNNNNAGG 1 cut(s) 1835
XapI RAATTY 1 cut(s) 412
XbaI TCTAGA 2 cut(s) 1256, 1792
XceI RCATGY 4 cut(s) 346, 862, 1141, 1418
XcmI CCANNNNNNNNNTGG 1 cut(s) 1613
XmaI CCCGGG 1 cut(s) 1002
XmiI GTMKAC 1 cut(s) 1392
XspI CTAG 5 cut(s) 612, 959, 1148, 1257, 1793
ZrmI AGTACT 1 cut(s) 616
Zsp2I ATGCAT 1 cut(s) 1420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.