Nuclear pore complex protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G32910 |
| fragaria_vesca | FvH4_2g35520 |
| malus_domestica | MD15G1093200.v1.1 |
| prunus_persica | Prupe.1G448000_v2.0.a1 |
| pyrus_communis | pycom15g08600 |
| rosa_chinensis | RchiOBHm_Chr6g0306261 |
| rosa_laevigata | RLG00000010809 |
| rosa_multiflora | Rmu_sc0017002.1_g000002 Rmu_sc0037804.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00161900 |
| rosa_rugosa | Rorug06G0348400 |
| rosa_samantha | Rh6AG460900 Rh6BG440100 Rh6CG475200 Rh6DG461500 |
| rosa_wichuraiana | Rw6G040160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 153, 1097 |
| AccI | GTMKAC | 1 cut(s) | 520 |
| AccII | CGCG | 2 cut(s) | 177, 1263 |
| AciI | CCGC | 7 cut(s) | 60, 194, 231, 292, 317, 676, 1997 |
| AclWI | GGATC | 4 cut(s) | 79, 305, 516, 694 |
| AcoI | YGGCCR | 2 cut(s) | 1886, 2041 |
| AcsI | RAATTY | 2 cut(s) | 439, 1712 |
| AcuI | CTGAAG | 1 cut(s) | 804 |
| AcyI | GRCGYC | 2 cut(s) | 9, 895 |
| AfaI | GTAC | 5 cut(s) | 104, 392, 425, 1520, 2016 |
| AfeI | AGCGCT | 1 cut(s) | 1841 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 153, 200, 496, 924, 1097 |
| AflII | CTTAAG | 2 cut(s) | 1445, 1748 |
| AjnI | CCWGG | 1 cut(s) | 1269 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 532, 564, 1084, 1116 |
| Alw21I | GWGCWC | 1 cut(s) | 350 |
| Alw26I | GTCTC | 4 cut(s) | 258, 713, 734, 1917 |
| AlwI | GGATC | 4 cut(s) | 79, 305, 516, 694 |
| Ama87I | CYCGRG | 3 cut(s) | 159, 918, 1572 |
| Aor51HI | AGCGCT | 1 cut(s) | 1841 |
| AoxI | GGCC | 5 cut(s) | 118, 1184, 1886, 1895, 2041 |
| ApeKI | GCWGC | 5 cut(s) | 1417, 1781, 1849, 1876, 2030 |
| ApoI | RAATTY | 2 cut(s) | 439, 1712 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1245 |
| AspA2I | CCTAGG | 1 cut(s) | 1135 |
| AspLEI | GCGC | 4 cut(s) | 41, 177, 862, 1842 |
| AspS9I | GGNCC | 6 cut(s) | 67, 156, 380, 544, 1184, 1891 |
| AsuC2I | CCSGG | 5 cut(s) | 6, 160, 161, 919, 920 |
| AsuHPI | GGTGA | 5 cut(s) | 104, 259, 676, 818, 899 |
| AsuII | TTCGAA | 1 cut(s) | 551 |
| AvaI | CYCGRG | 3 cut(s) | 159, 918, 1572 |
| AvaII | GGWCC | 5 cut(s) | 67, 156, 380, 544, 1891 |
| AvrII | CCTAGG | 1 cut(s) | 1135 |
| BanII | GRGCYC | 1 cut(s) | 350 |
| BauI | CACGAG | 1 cut(s) | 151 |
| BbsI | GAAGAC | 2 cut(s) | 213, 492 |
| Bbv12I | GWGCWC | 1 cut(s) | 350 |
| BbvCI | CCTCAGC | 1 cut(s) | 1836 |
| BbvI | GCAGC | 5 cut(s) | 1404, 1768, 1836, 1863, 2017 |
| BccI | CCATC | 7 cut(s) | 155, 412, 490, 788, 1186, 1757, 1834 |
| BceAI | ACGGC | 5 cut(s) | 133, 283, 304, 1449, 2028 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 866, 900 |
| BciT130I | CCWGG | 1 cut(s) | 1271 |
| BclI | TGATCA | 1 cut(s) | 904 |
| BcnI | CCSGG | 5 cut(s) | 6, 160, 161, 919, 920 |
| BcoDI | GTCTC | 4 cut(s) | 258, 713, 734, 1917 |
| BfaI | CTAG | 4 cut(s) | 1064, 1136, 1160, 1904 |
| BfmI | CTRYAG | 5 cut(s) | 332, 880, 1250, 1698, 1794 |
| BfoI | RGCGCY | 1 cut(s) | 1843 |
| BfrI | CTTAAG | 2 cut(s) | 1445, 1748 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1894 |
| BisI | GCNGC | 6 cut(s) | 317, 1418, 1782, 1850, 1877, 2031 |
| BlnI | CCTAGG | 1 cut(s) | 1135 |
| BlpI | GCTNAGC | 2 cut(s) | 1602, 1959 |
| BlsI | GCNGC | 6 cut(s) | 318, 1419, 1783, 1851, 1878, 2032 |
| Bme1390I | CCNGG | 6 cut(s) | 6, 160, 161, 919, 920, 1271 |
| Bme18I | GGWCC | 5 cut(s) | 67, 156, 380, 544, 1891 |
| BmeT110I | CYCGRG | 3 cut(s) | 159, 918, 1572 |
| BmgT120I | GGNCC | 6 cut(s) | 67, 156, 380, 544, 1184, 1891 |
| BmiI | GGNNCC | 5 cut(s) | 49, 69, 158, 381, 1102 |
| BmrFI | CCNGG | 6 cut(s) | 6, 160, 161, 919, 920, 1271 |
| BmrI | ACTGGG | 1 cut(s) | 1233 |
| BmsI | GCATC | 3 cut(s) | 271, 756, 1768 |
| BmuI | ACTGGG | 1 cut(s) | 1233 |
| BpiI | GAAGAC | 2 cut(s) | 213, 492 |
| BpmI | CTGGAG | 1 cut(s) | 1569 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1836 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1602, 1959 |
| Bpu14I | TTCGAA | 1 cut(s) | 551 |
| BpuEI | CTTGAG | 2 cut(s) | 1156, 1299 |
| BpuMI | CCSGG | 5 cut(s) | 6, 160, 161, 919, 920 |
| BsaHI | GRCGYC | 2 cut(s) | 9, 895 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 286, 316 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 153, 200, 496, 924, 1097 |
| Bse118I | RCCGGY | 1 cut(s) | 1893 |
| Bse1I | ACTGG | 3 cut(s) | 642, 1228, 1889 |
| Bse3DI | GCAATG | 1 cut(s) | 1661 |
| BseBI | CCWGG | 1 cut(s) | 1271 |
| BseGI | GGATG | 3 cut(s) | 226, 1197, 1330 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 153, 200, 496, 924, 1097 |
| BseMI | GCAATG | 1 cut(s) | 1661 |
| BseMII | CTCAG | 4 cut(s) | 72, 1616, 1850, 1928 |
| BseNI | ACTGG | 3 cut(s) | 642, 1228, 1889 |
| BseRI | GAGGAG | 1 cut(s) | 358 |
| BseX3I | CGGCCG | 1 cut(s) | 2041 |
| BseXI | GCAGC | 5 cut(s) | 1404, 1768, 1836, 1863, 2017 |
| BseYI | CCCAGC | 1 cut(s) | 1511 |
| Bsh1236I | CGCG | 2 cut(s) | 177, 1263 |
| Bsh1285I | CGRYCG | 2 cut(s) | 135, 2044 |
| BshFI | GGCC | 5 cut(s) | 120, 1186, 1888, 1897, 2043 |
| BsiEI | CGRYCG | 2 cut(s) | 135, 2044 |
| BsiHKAI | GWGCWC | 1 cut(s) | 350 |
| BsiHKCI | CYCGRG | 3 cut(s) | 159, 918, 1572 |
| BsiSI | CCGG | 9 cut(s) | 6, 24, 88, 160, 201, 340, 919, 1889, 1894 |
| BslFI | GGGAC | 3 cut(s) | 53, 142, 1729 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 153, 200, 496, 924, 1097 |
| BsmAI | GTCTC | 4 cut(s) | 258, 713, 734, 1917 |
| BsmBI | CGTCTC | 1 cut(s) | 258 |
| BsmFI | GGGAC | 3 cut(s) | 53, 142, 1729 |
| BsmI | GAATGC | 3 cut(s) | 815, 887, 1172 |
| BsnI | GGCC | 5 cut(s) | 120, 1186, 1888, 1897, 2043 |
| BsoBI | CYCGRG | 3 cut(s) | 159, 918, 1572 |
| Bsp119I | TTCGAA | 1 cut(s) | 551 |
| Bsp1286I | GDGCHC | 1 cut(s) | 350 |
| Bsp1407I | TGTACA | 1 cut(s) | 390 |
| Bsp143I | GATC | 7 cut(s) | 84, 132, 297, 480, 508, 686, 904 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1602, 1959 |
| Bsp19I | CCATGG | 2 cut(s) | 1105, 1953 |
| BspACI | CCGC | 7 cut(s) | 60, 194, 231, 292, 317, 676, 1997 |
| BspANI | GGCC | 5 cut(s) | 120, 1186, 1888, 1897, 2043 |
| BspCNI | CTCAG | 4 cut(s) | 73, 1615, 1849, 1927 |
| BspFNI | CGCG | 2 cut(s) | 177, 1263 |
| BspLI | GGNNCC | 5 cut(s) | 49, 69, 158, 381, 1102 |
| BspMAI | CTGCAG | 1 cut(s) | 884 |
| BspPI | GGATC | 4 cut(s) | 79, 305, 516, 694 |
| BspT104I | TTCGAA | 1 cut(s) | 551 |
| BspTI | CTTAAG | 2 cut(s) | 1445, 1748 |
| BsrDI | GCAATG | 1 cut(s) | 1661 |
| BsrFI | RCCGGY | 1 cut(s) | 1893 |
| BsrGI | TGTACA | 1 cut(s) | 390 |
| BsrI | ACTGG | 3 cut(s) | 642, 1228, 1889 |
| BssAI | RCCGGY | 1 cut(s) | 1893 |
| BssMI | GATC | 7 cut(s) | 84, 132, 297, 480, 508, 686, 904 |
| BssNI | GRCGYC | 2 cut(s) | 9, 895 |
| BssSI | CACGAG | 1 cut(s) | 151 |
| BssT1I | CCWWGG | 6 cut(s) | 1091, 1105, 1135, 1187, 1692, 1953 |
| Bst2BI | CACGAG | 1 cut(s) | 151 |
| Bst2UI | CCWGG | 1 cut(s) | 1271 |
| Bst4CI | ACNGT | 8 cut(s) | 308, 544, 716, 745, 911, 1039, 1486, 2019 |
| Bst6I | CTCTTC | 1 cut(s) | 1860 |
| BstACI | GRCGYC | 2 cut(s) | 9, 895 |
| BstAFI | CTTAAG | 2 cut(s) | 1445, 1748 |
| BstAUI | TGTACA | 1 cut(s) | 390 |
| BstBI | TTCGAA | 1 cut(s) | 551 |
| BstC8I | GCNNGC | 8 cut(s) | 37, 139, 358, 776, 1055, 1079, 1791, 2001 |
| BstDEI | CTNAG | 9 cut(s) | 81, 254, 459, 1589, 1602, 1836, 1914, 1959, 2053 |
| BstDSI | CCRYGG | 3 cut(s) | 115, 1105, 1953 |
| BstF5I | GGATG | 3 cut(s) | 226, 1197, 1330 |
| BstFNI | CGCG | 2 cut(s) | 177, 1263 |
| BstH2I | RGCGCY | 1 cut(s) | 1843 |
| BstHHI | GCGC | 4 cut(s) | 41, 177, 862, 1842 |
| BstKTI | GATC | 7 cut(s) | 87, 135, 300, 483, 511, 689, 907 |
| BstMAI | GTCTC | 4 cut(s) | 258, 713, 734, 1917 |
| BstMBI | GATC | 7 cut(s) | 84, 132, 297, 480, 508, 686, 904 |
| BstMCI | CGRYCG | 2 cut(s) | 135, 2044 |
| BstNI | CCWGG | 1 cut(s) | 1271 |
| BstNSI | RCATGY | 3 cut(s) | 778, 1057, 1081 |
| BstSCI | CCNGG | 6 cut(s) | 4, 158, 159, 917, 918, 1269 |
| BstSFI | CTRYAG | 5 cut(s) | 332, 880, 1250, 1698, 1794 |
| BstUI | CGCG | 2 cut(s) | 177, 1263 |
| BstV1I | GCAGC | 5 cut(s) | 1404, 1768, 1836, 1863, 2017 |
| BstV2I | GAAGAC | 2 cut(s) | 213, 492 |
| BstX2I | RGATCY | 3 cut(s) | 84, 508, 686 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1341 |
| BstYI | RGATCY | 3 cut(s) | 84, 508, 686 |
| BstZI | CGGCCG | 1 cut(s) | 2041 |
| BsuRI | GGCC | 5 cut(s) | 120, 1186, 1888, 1897, 2043 |
| BtgI | CCRYGG | 3 cut(s) | 115, 1105, 1953 |
| BtgZI | GCGATG | 2 cut(s) | 294, 1245 |
| BtsCI | GGATG | 3 cut(s) | 226, 1197, 1330 |
| BtsI | GCAGTG | 2 cut(s) | 483, 889 |
| BtsIMutI | CAGTG | 7 cut(s) | 483, 635, 889, 960, 1044, 1482, 1773 |
| Cac8I | GCNNGC | 8 cut(s) | 37, 139, 358, 776, 1055, 1079, 1791, 2001 |
| CfoI | GCGC | 4 cut(s) | 41, 177, 862, 1842 |
| Cfr10I | RCCGGY | 1 cut(s) | 1893 |
| Cfr13I | GGNCC | 6 cut(s) | 67, 156, 380, 544, 1184, 1891 |
| Cfr9I | CCCGGG | 2 cut(s) | 159, 918 |
| CpoI | CGGWCCG | 1 cut(s) | 1891 |
| CseI | GACGC | 2 cut(s) | 767, 884 |
| Csp6I | GTAC | 5 cut(s) | 103, 391, 424, 1519, 2015 |
| CspI | CGGWCCG | 1 cut(s) | 1891 |
| CviQI | GTAC | 5 cut(s) | 103, 391, 424, 1519, 2015 |
| DdeI | CTNAG | 9 cut(s) | 81, 254, 459, 1589, 1602, 1836, 1914, 1959, 2053 |
| DpnI | GATC | 7 cut(s) | 86, 134, 299, 482, 510, 688, 906 |
| DpnII | GATC | 7 cut(s) | 84, 132, 297, 480, 508, 686, 904 |
| EaeI | YGGCCR | 2 cut(s) | 1886, 2041 |
| EagI | CGGCCG | 1 cut(s) | 2041 |
| Eam1104I | CTCTTC | 1 cut(s) | 1860 |
| EarI | CTCTTC | 1 cut(s) | 1860 |
| EciI | GGCGGA | 2 cut(s) | 183, 307 |
| Ecl136II | GAGCTC | 1 cut(s) | 348 |
| EclXI | CGGCCG | 1 cut(s) | 2041 |
| Eco130I | CCWWGG | 6 cut(s) | 1091, 1105, 1135, 1187, 1692, 1953 |
| Eco24I | GRGCYC | 1 cut(s) | 350 |
| Eco32I | GATATC | 2 cut(s) | 1635, 1809 |
| Eco47I | GGWCC | 5 cut(s) | 67, 156, 380, 544, 1891 |
| Eco47III | AGCGCT | 1 cut(s) | 1841 |
| Eco52I | CGGCCG | 1 cut(s) | 2041 |
| Eco53kI | GAGCTC | 1 cut(s) | 348 |
| Eco57I | CTGAAG | 1 cut(s) | 804 |
| Eco88I | CYCGRG | 3 cut(s) | 159, 918, 1572 |
| EcoICRI | GAGCTC | 1 cut(s) | 348 |
| EcoRII | CCWGG | 1 cut(s) | 1269 |
| EcoRV | GATATC | 2 cut(s) | 1635, 1809 |
| EcoT14I | CCWWGG | 6 cut(s) | 1091, 1105, 1135, 1187, 1692, 1953 |
| EcoT22I | ATGCAT | 1 cut(s) | 1059 |
| EcoT38I | GRGCYC | 1 cut(s) | 350 |
| ErhI | CCWWGG | 6 cut(s) | 1091, 1105, 1135, 1187, 1692, 1953 |
| Esp3I | CGTCTC | 1 cut(s) | 258 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1227, 1259, 1572, 1604 |
| FaqI | GGGAC | 3 cut(s) | 53, 142, 1729 |
| FauI | CCCGC | 1 cut(s) | 224 |
| FbaI | TGATCA | 1 cut(s) | 904 |
| FblI | GTMKAC | 1 cut(s) | 520 |
| Fnu4HI | GCNGC | 6 cut(s) | 317, 1418, 1782, 1850, 1877, 2031 |
| FokI | GGATG | 3 cut(s) | 233, 1204, 1317 |
| FriOI | GRGCYC | 1 cut(s) | 350 |
| Fsp4HI | GCNGC | 6 cut(s) | 317, 1418, 1782, 1850, 1877, 2031 |
| FspBI | CTAG | 4 cut(s) | 1064, 1136, 1160, 1904 |
| GlaI | GCGC | 4 cut(s) | 40, 176, 861, 1841 |
| GluI | GCNGC | 6 cut(s) | 317, 1418, 1782, 1850, 1877, 2031 |
| GsaI | CCCAGC | 1 cut(s) | 1515 |
| GsuI | CTGGAG | 1 cut(s) | 1569 |
| HaeII | RGCGCY | 1 cut(s) | 1843 |
| HaeIII | GGCC | 5 cut(s) | 120, 1186, 1888, 1897, 2043 |
| HapII | CCGG | 9 cut(s) | 6, 24, 88, 160, 201, 340, 919, 1889, 1894 |
| HgaI | GACGC | 2 cut(s) | 767, 884 |
| HhaI | GCGC | 4 cut(s) | 41, 177, 862, 1842 |
| Hin1I | GRCGYC | 2 cut(s) | 9, 895 |
| Hin6I | GCGC | 4 cut(s) | 39, 175, 860, 1840 |
| HinP1I | GCGC | 4 cut(s) | 39, 175, 860, 1840 |
| HincII | GTYRAC | 1 cut(s) | 1218 |
| HindII | GTYRAC | 1 cut(s) | 1218 |
| HindIII | AAGCTT | 1 cut(s) | 554 |
| HinfI | GANTC | 9 cut(s) | 20, 209, 1131, 1292, 1402, 1616, 1688, 1799, 1865 |
| HpaII | CCGG | 9 cut(s) | 6, 24, 88, 160, 201, 340, 919, 1889, 1894 |
| HphI | GGTGA | 5 cut(s) | 104, 259, 676, 818, 899 |
| Hpy166II | GTNNAC | 4 cut(s) | 103, 521, 1218, 1519 |
| Hpy188I | TCNGA | 7 cut(s) | 132, 214, 956, 1028, 1639, 1687, 1917 |
| Hpy188III | TCNNGA | 6 cut(s) | 512, 782, 1046, 1173, 1709, 1970 |
| Hpy8I | GTNNAC | 4 cut(s) | 103, 521, 1218, 1519 |
| Hpy99I | CGWCG | 3 cut(s) | 14, 101, 388 |
| HpyAV | CCTTC | 3 cut(s) | 207, 361, 1655 |
| HpyCH4III | ACNGT | 8 cut(s) | 308, 544, 716, 745, 911, 1039, 1486, 2019 |
| HpyCH4IV | ACGT | 1 cut(s) | 978 |
| HpyF3I | CTNAG | 9 cut(s) | 81, 254, 459, 1589, 1602, 1836, 1914, 1959, 2053 |
| HpySE526I | ACGT | 1 cut(s) | 978 |
| Hsp92I | GRCGYC | 2 cut(s) | 9, 895 |
| HspAI | GCGC | 4 cut(s) | 39, 175, 860, 1840 |
| Ksp22I | TGATCA | 1 cut(s) | 904 |
| Kzo9I | GATC | 7 cut(s) | 84, 132, 297, 480, 508, 686, 904 |
| LmnI | GCTCC | 5 cut(s) | 53, 345, 1227, 1357, 1968 |
| Lsp1109I | GCAGC | 5 cut(s) | 1404, 1768, 1836, 1863, 2017 |
| LweI | GCATC | 3 cut(s) | 271, 756, 1768 |
| MaeI | CTAG | 4 cut(s) | 1064, 1136, 1160, 1904 |
| MaeII | ACGT | 1 cut(s) | 978 |
| MaeIII | GTNAC | 5 cut(s) | 302, 585, 678, 979, 1326 |
| MalI | GATC | 7 cut(s) | 86, 134, 299, 482, 510, 688, 906 |
| MboI | GATC | 7 cut(s) | 84, 132, 297, 480, 508, 686, 904 |
| MfeI | CAATTG | 1 cut(s) | 1607 |
| MflI | RGATCY | 3 cut(s) | 84, 508, 686 |
| MhlI | GDGCHC | 1 cut(s) | 350 |
| MlyI | GAGTC | 3 cut(s) | 14, 203, 1859 |
| MmeI | TCCRAC | 1 cut(s) | 1603 |
| Mph1103I | ATGCAT | 1 cut(s) | 1059 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1245 |
| MseI | TTAA | 5 cut(s) | 1085, 1446, 1749, 1871, 1881 |
| MslI | CAYNNNNRTG | 1 cut(s) | 62 |
| MspCI | CTTAAG | 2 cut(s) | 1445, 1748 |
| MspI | CCGG | 9 cut(s) | 6, 24, 88, 160, 201, 340, 919, 1889, 1894 |
| MspR9I | CCNGG | 6 cut(s) | 6, 160, 161, 919, 920, 1271 |
| MunI | CAATTG | 1 cut(s) | 1607 |
| Mva1269I | GAATGC | 3 cut(s) | 815, 887, 1172 |
| MvaI | CCWGG | 1 cut(s) | 1271 |
| MvnI | CGCG | 2 cut(s) | 177, 1263 |
| NciI | CCSGG | 5 cut(s) | 6, 160, 161, 919, 920 |
| NcoI | CCATGG | 2 cut(s) | 1105, 1953 |
| NdeII | GATC | 7 cut(s) | 84, 132, 297, 480, 508, 686, 904 |
| NlaIV | GGNNCC | 5 cut(s) | 49, 69, 158, 381, 1102 |
| NmeAIII | GCCGAG | 2 cut(s) | 1765, 2019 |
| NmuCI | GTSAC | 1 cut(s) | 1326 |
| NsiI | ATGCAT | 1 cut(s) | 1059 |
| NspI | RCATGY | 3 cut(s) | 778, 1057, 1081 |
| NspV | TTCGAA | 1 cut(s) | 551 |
| PaeI | GCATGC | 3 cut(s) | 778, 1057, 1081 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 548 |
| PctI | GAATGC | 3 cut(s) | 815, 887, 1172 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1245 |
| PfeI | GAWTC | 6 cut(s) | 1131, 1292, 1402, 1616, 1688, 1799 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 153, 1097 |
| PkrI | GCNGC | 6 cut(s) | 318, 1419, 1783, 1851, 1878, 2032 |
| Ple19I | CGATCG | 1 cut(s) | 135 |
| PleI | GAGTC | 3 cut(s) | 14, 203, 1859 |
| PpsI | GAGTC | 3 cut(s) | 14, 203, 1859 |
| Psp124BI | GAGCTC | 1 cut(s) | 350 |
| Psp6I | CCWGG | 1 cut(s) | 1269 |
| PspFI | CCCAGC | 1 cut(s) | 1511 |
| PspGI | CCWGG | 1 cut(s) | 1269 |
| PspN4I | GGNNCC | 5 cut(s) | 49, 69, 158, 381, 1102 |
| PspPI | GGNCC | 6 cut(s) | 67, 156, 380, 544, 1184, 1891 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1233, 1265 |
| PstI | CTGCAG | 1 cut(s) | 884 |
| PsuI | RGATCY | 3 cut(s) | 84, 508, 686 |
| PvuI | CGATCG | 1 cut(s) | 135 |
| RsaI | GTAC | 5 cut(s) | 104, 392, 425, 1520, 2016 |
| RsaNI | GTAC | 5 cut(s) | 103, 391, 424, 1519, 2015 |
| RseI | CAYNNNNRTG | 1 cut(s) | 62 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1891 |
| RsrII | CGGWCCG | 1 cut(s) | 1891 |
| SacI | GAGCTC | 1 cut(s) | 350 |
| SaqAI | TTAA | 5 cut(s) | 1085, 1446, 1749, 1871, 1881 |
| SatI | GCNGC | 6 cut(s) | 317, 1418, 1782, 1850, 1877, 2031 |
| Sau3AI | GATC | 7 cut(s) | 84, 132, 297, 480, 508, 686, 904 |
| Sau96I | GGNCC | 6 cut(s) | 67, 156, 380, 544, 1184, 1891 |
| SchI | GAGTC | 3 cut(s) | 14, 203, 1859 |
| ScrFI | CCNGG | 6 cut(s) | 6, 160, 161, 919, 920, 1271 |
| SduI | GDGCHC | 1 cut(s) | 350 |
| SfaNI | GCATC | 3 cut(s) | 271, 756, 1768 |
| SfcI | CTRYAG | 5 cut(s) | 332, 880, 1250, 1698, 1794 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1894 |
| SfuI | TTCGAA | 1 cut(s) | 551 |
| SinI | GGWCC | 5 cut(s) | 67, 156, 380, 544, 1891 |
| SmaI | CCCGGG | 2 cut(s) | 161, 920 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 62 |
| SmlI | CTYRAG | 4 cut(s) | 1171, 1314, 1445, 1748 |
| SmoI | CTYRAG | 4 cut(s) | 1171, 1314, 1445, 1748 |
| SphI | GCATGC | 3 cut(s) | 778, 1057, 1081 |
| SsiI | CCGC | 7 cut(s) | 60, 194, 231, 292, 317, 676, 1997 |
| SspI | AATATT | 1 cut(s) | 614 |
| SspMI | CTAG | 4 cut(s) | 1064, 1136, 1160, 1904 |
| SstI | GAGCTC | 1 cut(s) | 350 |
| StyD4I | CCNGG | 6 cut(s) | 4, 158, 159, 917, 918, 1269 |
| StyI | CCWWGG | 6 cut(s) | 1091, 1105, 1135, 1187, 1692, 1953 |
| TaaI | ACNGT | 8 cut(s) | 308, 544, 716, 745, 911, 1039, 1486, 2019 |
| TaiI | ACGT | 1 cut(s) | 981 |
| TaqI | TCGA | 8 cut(s) | 365, 483, 513, 551, 876, 1300, 1631, 1980 |
| TatI | WGTACW | 3 cut(s) | 102, 390, 423 |
| TauI | GCSGC | 1 cut(s) | 319 |
| TfiI | GAWTC | 6 cut(s) | 1131, 1292, 1402, 1616, 1688, 1799 |
| Tru1I | TTAA | 5 cut(s) | 1085, 1446, 1749, 1871, 1881 |
| Tru9I | TTAA | 5 cut(s) | 1085, 1446, 1749, 1871, 1881 |
| TscAI | CASTG | 7 cut(s) | 483, 642, 889, 967, 1044, 1489, 1780 |
| TseFI | GTSAC | 1 cut(s) | 1326 |
| TseI | GCWGC | 5 cut(s) | 1417, 1781, 1849, 1876, 2030 |
| Tsp45I | GTSAC | 1 cut(s) | 1326 |
| TspGWI | ACGGA | 4 cut(s) | 179, 372, 739, 1955 |
| TspMI | CCCGGG | 2 cut(s) | 159, 918 |
| TspRI | CASTG | 7 cut(s) | 483, 642, 889, 967, 1044, 1489, 1780 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 153, 1097 |
| Vha464I | CTTAAG | 2 cut(s) | 1445, 1748 |
| VpaK11BI | GGWCC | 5 cut(s) | 67, 156, 380, 544, 1891 |
| XapI | RAATTY | 2 cut(s) | 439, 1712 |
| XceI | RCATGY | 3 cut(s) | 778, 1057, 1081 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1529 |
| XmaI | CCCGGG | 2 cut(s) | 159, 918 |
| XmaJI | CCTAGG | 1 cut(s) | 1135 |
| XmiI | GTMKAC | 1 cut(s) | 520 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1245 |
| XspI | CTAG | 4 cut(s) | 1064, 1136, 1160, 1904 |
| Zsp2I | ATGCAT | 1 cut(s) | 1059 |