FvH4_2g36450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015560
Physical Location & Seq
Forward (+)
26686531 .. 26689009
2479 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36450.t1

Sequence Viewer

Length: 837 bp
ATGAAGCGGAAAGACCTCGAGCAAGTGTCCGACGACATGTCGTCTCCGTCGTCATCGAAATCCCGGCGACTGGACGGTAACTTGATCGGAGCTATGAACGGAGTTCCGAGTAGTGCATTCCAGGTGTTTGGTCAAAGGCCTCTGAAGCGAAAAGAGCTTGAAGAAGCGTTCGACGACATGTCGTCTAATTTCTCCAAGTCCAGGCGACTGGATGCTGATTTTTTTCCGACTATGGCGGAAGATAAGAGTGGTGGAATTGAGGCCTTGGAGCAAAGGCTAGCACAGGAACAGGCTTTGGCTTGCCCCAGTGAAATGCCAATGGAGCCCTTACCATTGTCTGACGAAAATGACAAGGCTCTGGTGCTCTACAACCCTGCCAATACCAATACGTTTTACAAAACCCCTGCTTCTAGGGATTTCTCTATCATTGTGAATTCGGACTTAATTCCGGGTTTAAGAGACTGTATATTTACACAGGGAAGTTCAAAGTGGGCAGCAAAACAAGTAGAGGCTGAACAAAGTAACAGAGAAGAATCAAATGGCTGTTTGGCTATTGTTCCATGGGTTGAATCTACTTGGCCTCCATCACCAAGAAGGGAGACACAGGCAGCCAGTCAGTCAGAGCCAATGCAAGCTGAAGAAGTTGAAATGATGGACACGGATGATATCAGTTTAGATGGTTCTAAACCTTCTCAGTTGGGTGCTCCGATGGATGGATCTTTTGAATTACAACGCTGGCAGCAACAGCAACAACACCATTGTACGCAGCCACAGCTGCTCAATAACACAAACACTCCCATCACCTGGGGTAACACTTACACTCCCGTCACATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

31.07

Weight (kDa)

4.61

Isoelectric Point (pI)

61.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36450
malus_domestica MD08G1124200.v1.1 MD15G1102900.v1.1
prunus_persica Prupe.1G455900_v2.0.a1
pyrus_communis pycom08g10300 pycom15g09390
rosa_chinensis RchiOBHm_Chr6g0305451
rosa_laevigata RLG00000010891
rosa_multiflora Rmu_sc0007817.1_g000006
rosa_roxburghii Rroxscaffold_7G00162810
rosa_rugosa Rorug06G0340300
rosa_samantha Rh6AG452400 Rh6BG449400 Rh6CG466100 Rh6DG452800
rosa_wichuraiana Rw6G039410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 804
AciI CCGC 2 cut(s) 7, 236
AclWI GGATC 1 cut(s) 724
AcsI RAATTY 1 cut(s) 433
AcuI CTGAAG 2 cut(s) 164, 657
AfaI GTAC 1 cut(s) 763
AfiI CCNNNNNNNGG 5 cut(s) 70, 201, 713, 804, 831
AflIII ACRYGT 2 cut(s) 36, 177
AgsI TTSAA 5 cut(s) 161, 486, 569, 647, 725
AhdI GACNNNNNGTC 4 cut(s) 37, 40, 178, 181
AjnI CCWGG 3 cut(s) 120, 200, 803
AluBI AGCT 4 cut(s) 92, 157, 635, 775
AluI AGCT 4 cut(s) 92, 157, 635, 775
Alw21I GWGCWC 2 cut(s) 366, 706
Alw26I GTCTC 3 cut(s) 48, 453, 593
AlwI GGATC 1 cut(s) 724
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 3 cut(s) 137, 261, 578
ApeKI GCWGC 5 cut(s) 494, 608, 739, 766, 775
ApoI RAATTY 1 cut(s) 433
AsuC2I CCSGG 2 cut(s) 64, 450
AsuHPI GGTGA 2 cut(s) 579, 793
AsuNHI GCTAGC 1 cut(s) 277
AvaI CYCGRG 1 cut(s) 17
BanII GRGCYC 1 cut(s) 327
Bbv12I GWGCWC 2 cut(s) 366, 706
BbvI GCAGC 5 cut(s) 506, 620, 751, 762, 778
BccI CCATC 6 cut(s) 592, 646, 671, 703, 707, 806
BciT130I CCWGG 3 cut(s) 122, 202, 805
BcnI CCSGG 2 cut(s) 64, 450
BcoDI GTCTC 3 cut(s) 48, 453, 593
BfaI CTAG 2 cut(s) 278, 411
BisI GCNGC 5 cut(s) 495, 609, 740, 767, 776
BlsI GCNGC 5 cut(s) 496, 610, 741, 768, 777
Bme1390I CCNGG 5 cut(s) 64, 122, 202, 450, 805
BmeRI GACNNNNNGTC 4 cut(s) 37, 40, 178, 181
BmeT110I CYCGRG 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 5 cut(s) 64, 122, 202, 450, 805
BmrI ACTGGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 202
BmtI GCTAGC 1 cut(s) 281
BmuI ACTGGG 1 cut(s) 300
BpuMI CCSGG 2 cut(s) 64, 450
BsaJI CCNNGG 3 cut(s) 264, 560, 804
BsaXI ACNNNNNCTCC 6 cut(s) 565, 595, 778, 805, 808, 835
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 201, 713, 804, 831
Bse1I ACTGG 4 cut(s) 75, 213, 306, 612
BseBI CCWGG 3 cut(s) 122, 202, 805
BseDI CCNNGG 3 cut(s) 264, 560, 804
BseGI GGATG 3 cut(s) 217, 667, 718
BseLI CCNNNNNNNGG 5 cut(s) 70, 201, 713, 804, 831
BseMII CTCAG 1 cut(s) 707
BseNI ACTGG 4 cut(s) 75, 213, 306, 612
BseXI GCAGC 5 cut(s) 506, 620, 751, 762, 778
BshFI GGCC 3 cut(s) 139, 263, 580
BsiHKAI GWGCWC 2 cut(s) 366, 706
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 2 cut(s) 64, 449
BslI CCNNNNNNNGG 5 cut(s) 70, 201, 713, 804, 831
BsmAI GTCTC 3 cut(s) 48, 453, 593
BsmBI CGTCTC 1 cut(s) 48
BsmI GAATGC 1 cut(s) 116
BsnI GGCC 3 cut(s) 139, 263, 580
BsoBI CYCGRG 1 cut(s) 17
Bsp1286I GDGCHC 3 cut(s) 327, 366, 706
Bsp143I GATC 2 cut(s) 84, 716
Bsp19I CCATGG 1 cut(s) 560
BspACI CCGC 2 cut(s) 7, 236
BspANI GGCC 3 cut(s) 139, 263, 580
BspCNI CTCAG 1 cut(s) 706
BspLI GGNNCC 1 cut(s) 324
BspOI GCTAGC 1 cut(s) 281
BspPI GGATC 1 cut(s) 724
BsrI ACTGG 4 cut(s) 75, 213, 306, 612
BssECI CCNNGG 3 cut(s) 264, 560, 804
BssMI GATC 2 cut(s) 84, 716
BssT1I CCWWGG 2 cut(s) 264, 560
Bst2UI CCWGG 3 cut(s) 122, 202, 805
Bst4CI ACNGT 2 cut(s) 77, 464
BstC8I GCNNGC 4 cut(s) 279, 301, 633, 737
BstDEI CTNAG 1 cut(s) 693
BstDSI CCRYGG 1 cut(s) 560
BstF5I GGATG 3 cut(s) 217, 667, 718
BstKTI GATC 2 cut(s) 87, 719
BstMAI GTCTC 3 cut(s) 48, 453, 593
BstMBI GATC 2 cut(s) 84, 716
BstMWI GCNNNNNNNGC 6 cut(s) 145, 154, 322, 745, 772, 775
BstNI CCWGG 3 cut(s) 122, 202, 805
BstNSI RCATGY 2 cut(s) 40, 181
BstSCI CCNGG 5 cut(s) 62, 120, 200, 448, 803
BstV1I GCAGC 5 cut(s) 506, 620, 751, 762, 778
BstX2I RGATCY 1 cut(s) 716
BstXI CCANNNNNNTGG 2 cut(s) 128, 208
BstYI RGATCY 1 cut(s) 716
BsuRI GGCC 3 cut(s) 139, 263, 580
BtgI CCRYGG 1 cut(s) 560
BtsCI GGATG 3 cut(s) 217, 667, 718
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 4 cut(s) 279, 301, 633, 737
Csp6I GTAC 1 cut(s) 762
CviAII CATG 4 cut(s) 37, 178, 561, 831
CviQI GTAC 1 cut(s) 762
DdeI CTNAG 1 cut(s) 693
DpnI GATC 2 cut(s) 86, 718
DpnII GATC 2 cut(s) 84, 716
DriI GACNNNNNGTC 4 cut(s) 37, 40, 178, 181
Eam1105I GACNNNNNGTC 4 cut(s) 37, 40, 178, 181
EciI GGCGGA 1 cut(s) 251
Eco130I CCWWGG 2 cut(s) 264, 560
Eco147I AGGCCT 2 cut(s) 139, 263
Eco24I GRGCYC 1 cut(s) 327
Eco32I GATATC 1 cut(s) 667
Eco57I CTGAAG 2 cut(s) 164, 657
Eco88I CYCGRG 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 433
EcoRII CCWGG 3 cut(s) 120, 200, 803
EcoRV GATATC 1 cut(s) 667
EcoT14I CCWWGG 2 cut(s) 264, 560
EcoT38I GRGCYC 1 cut(s) 327
ErhI CCWWGG 2 cut(s) 264, 560
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 4 cut(s) 40, 181, 564, 834
FaiI YATR 7 cut(s) 38, 95, 179, 233, 467, 562, 832
FatI CATG 4 cut(s) 36, 177, 560, 830
Fnu4HI GCNGC 5 cut(s) 495, 609, 740, 767, 776
FokI GGATG 3 cut(s) 224, 674, 725
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 5 cut(s) 495, 609, 740, 767, 776
FspBI CTAG 2 cut(s) 278, 411
GluI GCNGC 5 cut(s) 495, 609, 740, 767, 776
HaeIII GGCC 3 cut(s) 139, 263, 580
HapII CCGG 2 cut(s) 64, 449
Hin1II CATG 4 cut(s) 40, 181, 564, 834
HinfI GANTC 2 cut(s) 533, 569
HpaII CCGG 2 cut(s) 64, 449
HphI GGTGA 2 cut(s) 579, 793
Hpy188I TCNGA 9 cut(s) 31, 89, 108, 144, 228, 340, 439, 622, 708
Hpy99I CGWCG 3 cut(s) 35, 52, 176
HpyAV CCTTC 2 cut(s) 588, 699
HpyCH4III ACNGT 2 cut(s) 77, 464
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 2 cut(s) 116, 631
HpyF10VI GCNNNNNNNGC 6 cut(s) 145, 154, 322, 745, 772, 775
HpyF3I CTNAG 1 cut(s) 693
HpySE526I ACGT 1 cut(s) 389
Hsp92II CATG 4 cut(s) 40, 181, 564, 834
Kzo9I GATC 2 cut(s) 84, 716
LmnI GCTCC 4 cut(s) 89, 268, 322, 709
Lsp1109I GCAGC 5 cut(s) 506, 620, 751, 762, 778
LweI GCATC 1 cut(s) 202
MaeI CTAG 2 cut(s) 278, 411
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 4 cut(s) 77, 521, 809, 826
MalI GATC 2 cut(s) 86, 718
MboI GATC 2 cut(s) 84, 716
MboII GAAGA 4 cut(s) 173, 251, 542, 650
MflI RGATCY 1 cut(s) 716
MhlI GDGCHC 3 cut(s) 327, 366, 706
MluCI AATT 5 cut(s) 187, 255, 433, 444, 725
MmeI TCCRAC 2 cut(s) 54, 251
MnlI CCTC 5 cut(s) 26, 150, 253, 502, 591
MseI TTAA 2 cut(s) 443, 455
MspA1I CMGCKG 1 cut(s) 775
MspI CCGG 2 cut(s) 64, 449
MspR9I CCNGG 5 cut(s) 64, 122, 202, 450, 805
Mva1269I GAATGC 1 cut(s) 116
MvaI CCWGG 3 cut(s) 122, 202, 805
MwoI GCNNNNNNNGC 6 cut(s) 145, 154, 322, 745, 772, 775
NciI CCSGG 2 cut(s) 64, 450
NcoI CCATGG 1 cut(s) 560
NdeII GATC 2 cut(s) 84, 716
NheI GCTAGC 1 cut(s) 277
NlaIII CATG 4 cut(s) 40, 181, 564, 834
NlaIV GGNNCC 1 cut(s) 324
NmuCI GTSAC 1 cut(s) 826
NspI RCATGY 2 cut(s) 40, 181
PaeR7I CTCGAG 1 cut(s) 17
PceI AGGCCT 2 cut(s) 139, 263
PciI ACATGT 2 cut(s) 36, 177
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PctI GAATGC 1 cut(s) 116
PfeI GAWTC 2 cut(s) 533, 569
PflMI CCANNNNNTGG 1 cut(s) 804
PkrI GCNGC 5 cut(s) 496, 610, 741, 768, 777
PscI ACATGT 2 cut(s) 36, 177
Psp6I CCWGG 3 cut(s) 120, 200, 803
PspGI CCWGG 3 cut(s) 120, 200, 803
PspN4I GGNNCC 1 cut(s) 324
PspXI VCTCGAGB 1 cut(s) 17
PsuI RGATCY 1 cut(s) 716
PvuII CAGCTG 1 cut(s) 775
RsaI GTAC 1 cut(s) 763
RsaNI GTAC 1 cut(s) 762
SaqAI TTAA 2 cut(s) 443, 455
SatI GCNGC 5 cut(s) 495, 609, 740, 767, 776
Sau3AI GATC 2 cut(s) 84, 716
ScrFI CCNGG 5 cut(s) 64, 122, 202, 450, 805
SduI GDGCHC 3 cut(s) 327, 366, 706
SetI ASST 9 cut(s) 18, 94, 126, 159, 392, 637, 691, 777, 806
SfaNI GCATC 1 cut(s) 202
Sfr274I CTCGAG 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 5 cut(s) 187, 255, 433, 444, 725
SseBI AGGCCT 2 cut(s) 139, 263
SsiI CCGC 2 cut(s) 7, 236
SspMI CTAG 2 cut(s) 278, 411
StuI AGGCCT 2 cut(s) 139, 263
StyD4I CCNGG 5 cut(s) 62, 120, 200, 448, 803
StyI CCWWGG 2 cut(s) 264, 560
TaaI ACNGT 2 cut(s) 77, 464
TaiI ACGT 1 cut(s) 392
TaqI TCGA 3 cut(s) 18, 56, 171
TasI AATT 5 cut(s) 187, 255, 433, 444, 725
TfiI GAWTC 2 cut(s) 533, 569
Tru1I TTAA 2 cut(s) 443, 455
Tru9I TTAA 2 cut(s) 443, 455
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 826
TseI GCWGC 5 cut(s) 494, 608, 739, 766, 775
Tsp45I GTSAC 1 cut(s) 826
TspDTI ATGAA 2 cut(s) 17, 110
TspGWI ACGGA 3 cut(s) 36, 114, 674
TspRI CASTG 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 804
XapI RAATTY 1 cut(s) 433
XceI RCATGY 2 cut(s) 40, 181
XhoI CTCGAG 1 cut(s) 17
XspI CTAG 2 cut(s) 278, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.