MD15G1102900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015560
Physical Location & Seq
Forward (+)
7278156 .. 7279963
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1102900.v1.1.491

Sequence Viewer

Length: 657 bp
ATGAAGCGCAAAGACTATGAAGAATTAGACGACGACTTCTTCTCTCCTTCCTCAAAATCCAGGAGACTGGATGCTGGGTTATTTGCAACTTTGAATGAAGACCAAAGTAGTGCAGCTCAGGTGTTTGATGAAAAGCCAGCACCAGAAACCAGTGTTGTGATGCAAACAGATGATTTGCCAACGGACCCTTTGCCTTCAGGGGATGAGAAGGCTCTTGTGCTCTATAACCCCACGAATACGCGGATTTTCAAAGCACCCGATTCGCAGGATTTCTCTGTCATTGTGAATTCGGACTTGATTCCGGGTTTAAGGGATCATATTTATTCATGGGGATATTCAAAATCGCTAAAACCGGTAGAGGATCTTGGGTCCGATGAGGAAAACAAAGAAGTTTCAAATAGGTGTATGGCTGTTGTTCCCTGGGTTGCACCTAACTTCCCACCAGCATCAAGAGATGAGACACAGGCTGCAAGCCAGTCGGAATCCATGGAAGTTGAAATGATGGACACCGATGATAATGGTTACAATGGGGCGGAAGCATCGGGGTTTGGTGGAACAATGATGGAAGGACCCGGTGGGATACAATACTGGCAGCAACAGCAGTTACGTTGGATGGAGCCACAGCTCTTCCAGGACAATTATACTCCGGTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.35

Weight (kDa)

4.16

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36450
malus_domestica MD08G1124200.v1.1 MD15G1102900.v1.1
prunus_persica Prupe.1G455900_v2.0.a1
pyrus_communis pycom08g10300 pycom15g09390
rosa_chinensis RchiOBHm_Chr6g0305451
rosa_laevigata RLG00000010891
rosa_multiflora Rmu_sc0007817.1_g000006
rosa_roxburghii Rroxscaffold_7G00162810
rosa_rugosa Rorug06G0340300
rosa_samantha Rh6AG452400 Rh6BG449400 Rh6CG466100 Rh6DG452800
rosa_wichuraiana Rw6G039410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 241
AciI CCGC 2 cut(s) 241, 533
AclWI GGATC 2 cut(s) 321, 369
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 180
AgeI ACCGGT 1 cut(s) 352
AgsI TTSAA 5 cut(s) 94, 250, 339, 396, 497
AjnI CCWGG 3 cut(s) 59, 419, 630
AluBI AGCT 2 cut(s) 116, 625
AluI AGCT 2 cut(s) 116, 625
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 2 cut(s) 58, 452
AlwI GGATC 2 cut(s) 321, 369
ApeKI GCWGC 3 cut(s) 113, 467, 592
ApoI RAATTY 1 cut(s) 286
AsiGI ACCGGT 1 cut(s) 352
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 3 cut(s) 184, 369, 569
AsuC2I CCSGG 2 cut(s) 303, 573
AvaII GGWCC 3 cut(s) 184, 369, 569
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 3 cut(s) 125, 454, 604
BccI CCATC 3 cut(s) 496, 556, 607
BcgI CGANNNNNNTGC 4 cut(s) 243, 277, 459, 493
BciT130I CCWGG 3 cut(s) 61, 421, 632
BciVI GTATCC 1 cut(s) 573
BcnI CCSGG 2 cut(s) 303, 573
BcoDI GTCTC 2 cut(s) 58, 452
BfuI GTATCC 1 cut(s) 573
BisI GCNGC 3 cut(s) 114, 468, 593
BlsI GCNGC 3 cut(s) 115, 469, 594
Bme1390I CCNGG 5 cut(s) 61, 303, 421, 573, 632
Bme18I GGWCC 3 cut(s) 184, 369, 569
BmgT120I GGNCC 3 cut(s) 184, 369, 569
BmiI GGNNCC 4 cut(s) 186, 370, 571, 618
BmrFI CCNGG 5 cut(s) 61, 303, 421, 573, 632
BmsI GCATC 4 cut(s) 61, 150, 455, 548
BpiI GAAGAC 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 117
BpuMI CCSGG 2 cut(s) 303, 573
BsaJI CCNNGG 3 cut(s) 419, 420, 486
BsaWI WCCGGW 2 cut(s) 352, 646
Bse118I RCCGGY 1 cut(s) 352
Bse1I ACTGG 4 cut(s) 72, 150, 475, 593
BseBI CCWGG 3 cut(s) 61, 421, 632
BseDI CCNNGG 3 cut(s) 419, 420, 486
BseGI GGATG 3 cut(s) 76, 208, 618
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 4 cut(s) 72, 150, 475, 593
BseXI GCAGC 3 cut(s) 125, 454, 604
BseYI CCCAGC 1 cut(s) 74
BsgI GTGCAG 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 241
BshTI ACCGGT 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 4 cut(s) 302, 353, 573, 647
BsmAI GTCTC 2 cut(s) 58, 452
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 313, 361
Bsp19I CCATGG 1 cut(s) 486
BspACI CCGC 2 cut(s) 241, 533
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 241
BspLI GGNNCC 4 cut(s) 186, 370, 571, 618
BspPI GGATC 2 cut(s) 321, 369
BspQI GCTCTTC 1 cut(s) 632
BsrFI RCCGGY 1 cut(s) 352
BsrI ACTGG 4 cut(s) 72, 150, 475, 593
BssAI RCCGGY 1 cut(s) 352
BssECI CCNNGG 3 cut(s) 419, 420, 486
BssMI GATC 2 cut(s) 313, 361
BssT1I CCWWGG 1 cut(s) 486
Bst2UI CCWGG 3 cut(s) 61, 421, 632
Bst6I CTCTTC 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 138, 472
BstDEI CTNAG 1 cut(s) 117
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 3 cut(s) 76, 208, 618
BstFNI CGCG 1 cut(s) 241
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 2 cut(s) 316, 364
BstMAI GTCTC 2 cut(s) 58, 452
BstMBI GATC 2 cut(s) 313, 361
BstMWI GCNNNNNNNGC 1 cut(s) 598
BstNI CCWGG 3 cut(s) 61, 421, 632
BstSCI CCNGG 5 cut(s) 59, 301, 419, 571, 630
BstUI CGCG 1 cut(s) 241
BstV1I GCAGC 3 cut(s) 125, 454, 604
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 361
BstXI CCANNNNNNTGG 1 cut(s) 67
BstYI RGATCY 1 cut(s) 361
BsuI GTATCC 1 cut(s) 573
BtgI CCRYGG 1 cut(s) 486
BtsCI GGATG 3 cut(s) 76, 208, 618
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 2 cut(s) 138, 472
CfoI GCGC 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 352
Cfr13I GGNCC 3 cut(s) 184, 369, 569
CspAI ACCGGT 1 cut(s) 352
CviAII CATG 2 cut(s) 327, 487
CviJI RGCY 8 cut(s) 116, 136, 212, 410, 467, 474, 619, 625
CviKI_1 RGCY 8 cut(s) 116, 136, 212, 410, 467, 474, 619, 625
DdeI CTNAG 1 cut(s) 117
DpnI GATC 2 cut(s) 315, 363
DpnII GATC 2 cut(s) 313, 361
Eam1104I CTCTTC 1 cut(s) 632
EarI CTCTTC 1 cut(s) 632
EciI GGCGGA 1 cut(s) 548
Eco130I CCWWGG 1 cut(s) 486
Eco47I GGWCC 3 cut(s) 184, 369, 569
Eco57I CTGAAG 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 569
EcoRI GAATTC 1 cut(s) 286
EcoRII CCWGG 3 cut(s) 59, 419, 630
EcoT14I CCWWGG 1 cut(s) 486
ErhI CCWWGG 1 cut(s) 486
FaeI CATG 2 cut(s) 330, 490
FaiI YATR 7 cut(s) 18, 225, 318, 328, 407, 488, 642
FatI CATG 2 cut(s) 326, 486
Fnu4HI GCNGC 3 cut(s) 114, 468, 593
FokI GGATG 3 cut(s) 83, 215, 625
Fsp4HI GCNGC 3 cut(s) 114, 468, 593
GlaI GCGC 1 cut(s) 8
GluI GCNGC 3 cut(s) 114, 468, 593
GsaI CCCAGC 1 cut(s) 78
HapII CCGG 4 cut(s) 302, 353, 573, 647
HhaI GCGC 1 cut(s) 9
Hin1II CATG 2 cut(s) 330, 490
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 3 cut(s) 260, 298, 482
HpaII CCGG 4 cut(s) 302, 353, 573, 647
Hpy188I TCNGA 3 cut(s) 292, 373, 481
Hpy188III TCNNGA 1 cut(s) 450
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 4 cut(s) 57, 202, 204, 560
HpyCH4IV ACGT 1 cut(s) 607
HpyCH4V TGCA 5 cut(s) 86, 113, 163, 428, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 598
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 1 cut(s) 607
Hsp92II CATG 2 cut(s) 330, 490
HspAI GCGC 1 cut(s) 7
Kzo9I GATC 2 cut(s) 313, 361
LguI GCTCTTC 1 cut(s) 632
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 3 cut(s) 125, 454, 604
LweI GCATC 4 cut(s) 61, 150, 455, 548
MaeII ACGT 1 cut(s) 607
MaeIII GTNAC 3 cut(s) 521, 603, 649
MalI GATC 2 cut(s) 315, 363
MboI GATC 2 cut(s) 313, 361
MboII GAAGA 4 cut(s) 31, 32, 110, 619
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 3 cut(s) 23, 286, 637
MmeI TCCRAC 2 cut(s) 459, 590
MnlI CCTC 3 cut(s) 61, 352, 370
MseI TTAA 2 cut(s) 308, 655
MspI CCGG 4 cut(s) 302, 353, 573, 647
MspR9I CCNGG 5 cut(s) 61, 303, 421, 573, 632
MvaI CCWGG 3 cut(s) 61, 421, 632
MvnI CGCG 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 598
NciI CCSGG 2 cut(s) 303, 573
NcoI CCATGG 1 cut(s) 486
NdeII GATC 2 cut(s) 313, 361
NlaIII CATG 2 cut(s) 330, 490
NlaIV GGNNCC 4 cut(s) 186, 370, 571, 618
NmuCI GTSAC 1 cut(s) 649
PasI CCCWGGG 1 cut(s) 420
PciSI GCTCTTC 1 cut(s) 632
PfeI GAWTC 3 cut(s) 260, 298, 482
PfoI TCCNGGA 2 cut(s) 59, 630
PinAI ACCGGT 1 cut(s) 352
PkrI GCNGC 3 cut(s) 115, 469, 594
PpuMI RGGWCCY 1 cut(s) 569
Psp5II RGGWCCY 1 cut(s) 569
Psp6I CCWGG 3 cut(s) 59, 419, 630
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 3 cut(s) 59, 419, 630
PspN4I GGNNCC 4 cut(s) 186, 370, 571, 618
PspPI GGNCC 3 cut(s) 184, 369, 569
PspPPI RGGWCCY 1 cut(s) 569
PsuI RGATCY 1 cut(s) 361
SapI GCTCTTC 1 cut(s) 632
SaqAI TTAA 2 cut(s) 308, 655
SatI GCNGC 3 cut(s) 114, 468, 593
Sau3AI GATC 2 cut(s) 313, 361
Sau96I GGNCC 3 cut(s) 184, 369, 569
ScrFI CCNGG 5 cut(s) 61, 303, 421, 573, 632
SduI GDGCHC 1 cut(s) 222
SetI ASST 6 cut(s) 118, 123, 404, 433, 610, 627
SfaNI GCATC 4 cut(s) 61, 150, 455, 548
SinI GGWCC 3 cut(s) 184, 369, 569
Sse9I AATT 3 cut(s) 23, 286, 637
SsiI CCGC 2 cut(s) 241, 533
StyD4I CCNGG 5 cut(s) 59, 301, 419, 571, 630
StyI CCWWGG 1 cut(s) 486
TaiI ACGT 1 cut(s) 610
TasI AATT 3 cut(s) 23, 286, 637
TfiI GAWTC 3 cut(s) 260, 298, 482
Tru1I TTAA 2 cut(s) 308, 655
Tru9I TTAA 2 cut(s) 308, 655
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 3 cut(s) 113, 467, 592
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 5 cut(s) 17, 33, 111, 144, 315
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 3 cut(s) 184, 369, 569
XapI RAATTY 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.