RchiOBHm_Chr6g0305451

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015560
Physical Location & Seq
Reverse (-)
64448086 .. 64450021
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27450

Sequence Viewer

Length: 813 bp
ATGAAGCGGAAAGACCTCTCATTCGACGACATGTCGTCTCCGTCATCCAAGTCCCGGCGACTGGATGCTAACTTCATCGGAGCCGTGAACGGAGATGGAAGTAGTGCATTCCAGGTGCTTGATCAAACGCCACCACAGAATCGGCCTCTGAAGCGAAAAGAAGCGTTCGACGACTTGTCGCCTCATTTCTCTAAATCCAGGCGACTGGATGCTGATTTGTTTTCGACCATGGCGGAAGATCAGAGTGGTGGAATTGAGGCCTTGGAGCAAAGGCTAGCACAGGAACAGGCCTTGGCATGCCCCAGTGAGATGCAGAAAGGGGCTTTGCCGATGGAGCCGTTGGCATTGCCTGAGGAAAACGAGAAGGCTCTTGTGATTTACAACCCTGCGAATACGTTTTACAAGACTCCTGCTTCCAAGGATTTCTCTATCATTGTGAATTCGGACTTGATTCCGGGTTTAAGAGACCATATCTTTACACAGGGAAGTTTAAAGTGGTCAAACCCAGTAGAGGCTGAGCAAAGTGACAGAGAAGATTCAAATGGCTGTTTGGCTATTGTTCCTTGGGTTGAATCTAATTGGCCTCCATCCTCAAGTTCAGAGACACAGGCAGCCGGTCTTTCGGAGCCAATGCAAGCTGAAGAAGTTGAAATGATGGACACAGATGATAACAGTTCTGATGGCTCTAAATCCTCTGAGTTAGGTGGTATGATGGATGGATCTTTTGAATTACAACGCTGGCAGCAACAGCAACAACTCCATTGTATGGAGCCACAGCTGCTCAATAACACTATCACCCCCATCACTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

29.93

Weight (kDa)

4.45

Isoelectric Point (pI)

63.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36450
malus_domestica MD08G1124200.v1.1 MD15G1102900.v1.1
prunus_persica Prupe.1G455900_v2.0.a1
pyrus_communis pycom08g10300 pycom15g09390
rosa_chinensis RchiOBHm_Chr6g0305451
rosa_laevigata RLG00000010891
rosa_multiflora Rmu_sc0007817.1_g000006
rosa_roxburghii Rroxscaffold_7G00162810
rosa_rugosa Rorug06G0340300
rosa_samantha Rh6AG452400 Rh6BG449400 Rh6CG466100 Rh6DG452800
rosa_wichuraiana Rw6G039410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 766, 807
AciI CCGC 2 cut(s) 7, 233
AclWI GGATC 1 cut(s) 727
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 2 cut(s) 170, 660
AfiI CCNNNNNNNGG 5 cut(s) 54, 61, 511, 766, 807
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 4 cut(s) 540, 572, 650, 728
AhdI GACNNNNNGTC 3 cut(s) 31, 34, 175
AjnI CCWGG 2 cut(s) 111, 197
AluBI AGCT 2 cut(s) 638, 778
AluI AGCT 2 cut(s) 638, 778
Alw26I GTCTC 3 cut(s) 42, 459, 596
AlwI GGATC 1 cut(s) 727
AoxI GGCC 4 cut(s) 143, 258, 288, 581
ApeKI GCWGC 3 cut(s) 611, 742, 778
ApoI RAATTY 1 cut(s) 439
ArsI GACNNNNNNTTYG 1 cut(s) 37
AsuC2I CCSGG 2 cut(s) 55, 456
AsuHPI GGTGA 1 cut(s) 787
AsuNHI GCTAGC 1 cut(s) 274
AxyI CCTNAGG 1 cut(s) 351
BbvI GCAGC 3 cut(s) 623, 754, 765
BccI CCATC 8 cut(s) 89, 325, 595, 649, 674, 706, 710, 809
BceAI ACGGC 2 cut(s) 68, 322
BciT130I CCWGG 2 cut(s) 113, 199
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 2 cut(s) 55, 456
BcoDI GTCTC 3 cut(s) 42, 459, 596
BfaI CTAG 1 cut(s) 275
BisI GCNGC 3 cut(s) 612, 743, 779
BlpI GCTNAGC 1 cut(s) 516
BlsI GCNGC 3 cut(s) 613, 744, 780
Bme1390I CCNGG 4 cut(s) 55, 113, 199, 456
BmeRI GACNNNNNGTC 3 cut(s) 31, 34, 175
BmiI GGNNCC 4 cut(s) 82, 336, 627, 771
BmrFI CCNGG 4 cut(s) 55, 113, 199, 456
BmrI ACTGGG 2 cut(s) 297, 500
BmsI GCATC 3 cut(s) 55, 199, 300
BmtI GCTAGC 1 cut(s) 278
BmuI ACTGGG 2 cut(s) 297, 500
Bpu1102I GCTNAGC 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 577
BpuMI CCSGG 2 cut(s) 55, 456
BsaI GGTCTC 1 cut(s) 459
BsaJI CCNNGG 5 cut(s) 228, 261, 291, 417, 563
Bsc4I CCNNNNNNNGG 5 cut(s) 54, 61, 511, 766, 807
Bse118I RCCGGY 1 cut(s) 614
Bse1I ACTGG 4 cut(s) 66, 210, 303, 506
Bse21I CCTNAGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 344
BseBI CCWGG 2 cut(s) 113, 199
BseDI CCNNGG 5 cut(s) 228, 261, 291, 417, 563
BseGI GGATG 5 cut(s) 44, 70, 214, 587, 721
BseLI CCNNNNNNNGG 5 cut(s) 54, 61, 511, 766, 807
BseMI GCAATG 1 cut(s) 344
BseMII CTCAG 3 cut(s) 342, 507, 687
BseNI ACTGG 4 cut(s) 66, 210, 303, 506
BseXI GCAGC 3 cut(s) 623, 754, 765
BshFI GGCC 4 cut(s) 145, 260, 290, 583
BsiSI CCGG 3 cut(s) 55, 455, 615
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 5 cut(s) 54, 61, 511, 766, 807
BsmAI GTCTC 3 cut(s) 42, 459, 596
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 4 cut(s) 145, 260, 290, 583
Bso31I GGTCTC 1 cut(s) 459
Bsp143I GATC 3 cut(s) 121, 238, 719
Bsp1720I GCTNAGC 1 cut(s) 516
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 2 cut(s) 7, 233
BspANI GGCC 4 cut(s) 145, 260, 290, 583
BspCNI CTCAG 3 cut(s) 343, 508, 688
BspLI GGNNCC 4 cut(s) 82, 336, 627, 771
BspOI GCTAGC 1 cut(s) 278
BspPI GGATC 1 cut(s) 727
BspTNI GGTCTC 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 614
BsrI ACTGG 4 cut(s) 66, 210, 303, 506
BssAI RCCGGY 1 cut(s) 614
BssECI CCNNGG 5 cut(s) 228, 261, 291, 417, 563
BssMI GATC 3 cut(s) 121, 238, 719
BssT1I CCWWGG 5 cut(s) 228, 261, 291, 417, 563
Bst2UI CCWGG 2 cut(s) 113, 199
Bst4CI ACNGT 1 cut(s) 674
BstC8I GCNNGC 4 cut(s) 276, 298, 636, 740
BstDEI CTNAG 3 cut(s) 351, 516, 696
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 5 cut(s) 44, 70, 214, 587, 721
BstKTI GATC 3 cut(s) 124, 241, 722
BstMAI GTCTC 3 cut(s) 42, 459, 596
BstMBI GATC 3 cut(s) 121, 238, 719
BstMWI GCNNNNNNNGC 4 cut(s) 151, 334, 748, 778
BstNI CCWGG 2 cut(s) 113, 199
BstNSI RCATGY 2 cut(s) 34, 300
BstSCI CCNGG 4 cut(s) 53, 111, 197, 454
BstV1I GCAGC 3 cut(s) 623, 754, 765
BstX2I RGATCY 1 cut(s) 719
BstXI CCANNNNNNTGG 1 cut(s) 205
BstYI RGATCY 1 cut(s) 719
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 4 cut(s) 145, 260, 290, 583
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 5 cut(s) 44, 70, 214, 587, 721
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 4 cut(s) 276, 298, 636, 740
Cfr10I RCCGGY 1 cut(s) 614
CviAII CATG 3 cut(s) 31, 229, 297
DdeI CTNAG 3 cut(s) 351, 516, 696
DpnI GATC 3 cut(s) 123, 240, 721
DpnII GATC 3 cut(s) 121, 238, 719
DraI TTTAAA 1 cut(s) 492
DriI GACNNNNNGTC 3 cut(s) 31, 34, 175
Eam1105I GACNNNNNGTC 3 cut(s) 31, 34, 175
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 5 cut(s) 228, 261, 291, 417, 563
Eco147I AGGCCT 2 cut(s) 260, 290
Eco31I GGTCTC 1 cut(s) 459
Eco57I CTGAAG 2 cut(s) 170, 660
Eco81I CCTNAGG 1 cut(s) 351
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 2 cut(s) 111, 197
EcoT14I CCWWGG 5 cut(s) 228, 261, 291, 417, 563
ErhI CCWWGG 5 cut(s) 228, 261, 291, 417, 563
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 3 cut(s) 34, 232, 300
FaiI YATR 6 cut(s) 32, 230, 298, 471, 710, 767
FaqI GGGAC 1 cut(s) 37
FatI CATG 3 cut(s) 30, 228, 296
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 612, 743, 779
FokI GGATG 5 cut(s) 31, 77, 221, 574, 728
Fsp4HI GCNGC 3 cut(s) 612, 743, 779
FspBI CTAG 1 cut(s) 275
GluI GCNGC 3 cut(s) 612, 743, 779
HaeIII GGCC 4 cut(s) 145, 260, 290, 583
HapII CCGG 3 cut(s) 55, 455, 615
Hin1II CATG 3 cut(s) 34, 232, 300
HinfI GANTC 5 cut(s) 139, 406, 451, 536, 572
HpaII CCGG 3 cut(s) 55, 455, 615
HphI GGTGA 1 cut(s) 787
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 8 cut(s) 80, 150, 243, 445, 601, 625, 679, 697
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 2 cut(s) 29, 173
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 1 cut(s) 674
HpyCH4IV ACGT 1 cut(s) 395
HpyCH4V TGCA 3 cut(s) 107, 313, 634
HpyF10VI GCNNNNNNNGC 4 cut(s) 151, 334, 748, 778
HpyF3I CTNAG 3 cut(s) 351, 516, 696
HpySE526I ACGT 1 cut(s) 395
Hsp92II CATG 3 cut(s) 34, 232, 300
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 121, 238, 719
LmnI GCTCC 5 cut(s) 80, 265, 334, 625, 769
Lsp1109I GCAGC 3 cut(s) 623, 754, 765
LweI GCATC 3 cut(s) 55, 199, 300
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 524
MalI GATC 3 cut(s) 123, 240, 721
MboI GATC 3 cut(s) 121, 238, 719
MboII GAAGA 3 cut(s) 248, 545, 653
MflI RGATCY 1 cut(s) 719
MluCI AATT 4 cut(s) 252, 439, 577, 728
MlyI GAGTC 1 cut(s) 400
MnlI CCTC 9 cut(s) 26, 156, 192, 250, 346, 505, 594, 601, 703
MseI TTAA 2 cut(s) 461, 491
MspA1I CMGCKG 1 cut(s) 778
MspI CCGG 3 cut(s) 55, 455, 615
MspR9I CCNGG 4 cut(s) 55, 113, 199, 456
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 2 cut(s) 113, 199
MwoI GCNNNNNNNGC 4 cut(s) 151, 334, 748, 778
NciI CCSGG 2 cut(s) 55, 456
NcoI CCATGG 1 cut(s) 228
NdeII GATC 3 cut(s) 121, 238, 719
NheI GCTAGC 1 cut(s) 274
NlaIII CATG 3 cut(s) 34, 232, 300
NlaIV GGNNCC 4 cut(s) 82, 336, 627, 771
NmuCI GTSAC 1 cut(s) 524
NspI RCATGY 2 cut(s) 34, 300
PaeI GCATGC 1 cut(s) 300
PceI AGGCCT 2 cut(s) 260, 290
PciI ACATGT 1 cut(s) 30
PctI GAATGC 1 cut(s) 107
PfeI GAWTC 4 cut(s) 139, 451, 536, 572
PflMI CCANNNNNTGG 2 cut(s) 766, 807
PkrI GCNGC 3 cut(s) 613, 744, 780
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
PscI ACATGT 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 111, 197
PspGI CCWGG 2 cut(s) 111, 197
PspN4I GGNNCC 4 cut(s) 82, 336, 627, 771
PsuI RGATCY 1 cut(s) 719
PvuII CAGCTG 1 cut(s) 778
SaqAI TTAA 2 cut(s) 461, 491
SatI GCNGC 3 cut(s) 612, 743, 779
Sau3AI GATC 3 cut(s) 121, 238, 719
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 4 cut(s) 55, 113, 199, 456
SetI ASST 6 cut(s) 18, 117, 398, 640, 706, 780
SfaNI GCATC 3 cut(s) 55, 199, 300
SmlI CTYRAG 1 cut(s) 592
SmoI CTYRAG 1 cut(s) 592
SphI GCATGC 1 cut(s) 300
Sse9I AATT 4 cut(s) 252, 439, 577, 728
SseBI AGGCCT 2 cut(s) 260, 290
SsiI CCGC 2 cut(s) 7, 233
SspMI CTAG 1 cut(s) 275
StuI AGGCCT 2 cut(s) 260, 290
StyD4I CCNGG 4 cut(s) 53, 111, 197, 454
StyI CCWWGG 5 cut(s) 228, 261, 291, 417, 563
TaaI ACNGT 1 cut(s) 674
TaiI ACGT 1 cut(s) 398
TaqI TCGA 3 cut(s) 24, 168, 224
TasI AATT 4 cut(s) 252, 439, 577, 728
TfiI GAWTC 4 cut(s) 139, 451, 536, 572
Tru1I TTAA 2 cut(s) 461, 491
Tru9I TTAA 2 cut(s) 461, 491
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 524
TseI GCWGC 3 cut(s) 611, 742, 778
Tsp45I GTSAC 1 cut(s) 524
TspDTI ATGAA 2 cut(s) 17, 64
TspGWI ACGGA 2 cut(s) 30, 105
TspRI CASTG 1 cut(s) 310
Van91I CCANNNNNTGG 2 cut(s) 766, 807
XapI RAATTY 1 cut(s) 439
XceI RCATGY 2 cut(s) 34, 300
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.